Mercurial > repos > richard-burhans > batched_lastz
diff batched_lastz.xml @ 14:43e72105f473 draft default tip
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 646cb397d5219aba8b2eb365bef61195789e1d81
author | richard-burhans |
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date | Fri, 30 Aug 2024 15:32:44 +0000 |
parents | 1aee697ec0fc |
children |
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--- a/batched_lastz.xml Mon Aug 19 19:42:23 2024 +0000 +++ b/batched_lastz.xml Fri Aug 30 15:32:44 2024 +0000 @@ -26,17 +26,17 @@ </test> </tests> <help><![CDATA[ -Batched LASTZ is a special version of LASTZ designed to process output of Galaxy's SegAlign tool. It outputs pairiwse alignments in a verietry of formats. +Batched LASTZ is a special version of LASTZ designed to process output of Galaxy's KegAlign tool. It outputs pairiwse alignments in a verietry of formats. **Using this tool** .. class:: warningmark -This tool is the second part of a two-step process for generation of paiwrise alignments. The output of this tool is alignments in a format that was specified in **Output Options** section of SegAlign tool. +This tool is the second part of a two-step process for generation of paiwrise alignments. The output of this tool is alignments in a format that was specified in **Output Options** section of KegAlign tool. **What it does** -SegAlign processes **Target** and **Query** sequences to identify highly similar regions where gapped extension will be performed to create actual alignments. The actual alignments are generated by **Batched LASTZ** that should be run on the output of this tool. +KegAlign processes **Target** and **Query** sequences to identify highly similar regions where gapped extension will be performed to create actual alignments. The actual alignments are generated by **Batched LASTZ** that should be run on the output of this tool. The default output is a MAF alignment file. Other formats can be configured in *Output Options* section. See LASTZ manual <https://lastz.github.io/lastz/#formats>`_ for description of possible formats. ]]></help>