Mercurial > repos > richard-burhans > batched_lastz
changeset 2:007990f98551 draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
| author | richard-burhans |
|---|---|
| date | Wed, 01 May 2024 13:53:26 +0000 |
| parents | ad3554614aad |
| children | eb62d63f4272 |
| files | batched_lastz.xml run_lastz_tarball.py |
| diffstat | 2 files changed, 9 insertions(+), 2 deletions(-) [+] |
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--- a/batched_lastz.xml Tue Apr 30 21:48:00 2024 +0000 +++ b/batched_lastz.xml Wed May 01 13:53:26 2024 +0000 @@ -1,11 +1,18 @@ + <tool id="batched_lastz" name="Batched Lastz" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>: align batches of sequences</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> + <required_files> + <include path="run_lastz_tarball.py"/> + </required_files> <command detect_errors="exit_code"><![CDATA[ - run_lastz_tarball.py '--input=$input' '--output=$output' '--parallel=\${GALAXY_SLOTS:-2}' + python '$__tool_directory__/run_lastz_tarball.py' + '--input=$input' + '--output=$output' + --parallel=\${GALAXY_SLOTS:-2} ]]></command> <inputs> <param argument="--input" type="data" format="tgz" label="Tarball"/>
--- a/run_lastz_tarball.py Tue Apr 30 21:48:00 2024 +0000 +++ b/run_lastz_tarball.py Wed May 01 13:53:26 2024 +0000 @@ -323,7 +323,7 @@ parser = argparse.ArgumentParser() parser.add_argument("--input", type=str, required=True) parser.add_argument("--output", type=str, required=True) - parser.add_argument("--parallel", type=int, default=1, required=False) + parser.add_argument("--parallel", type=int, default=2, required=False) parser.add_argument("--debug", action="store_true", required=False) args = parser.parse_args()