Mercurial > repos > richard-burhans > ncbi_egapx

comparison test-data/input.yaml @ 11:5bec47dfe99a draft

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx commit 544ef29cd524d03b10fdc60769d5d0f2a93d3a67
author richard-burhans
date Thu, 14 Nov 2024 15:28:04 +0000
parents 4420dd857c41
children
comparison
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10:7fa335454224 11:5bec47dfe99a
1 # This is a very minimal example of EGAPx, it fits into 4 CPU cores and 6GB of memory. 1 # This is a very minimal example of EGAPx, it fits into 4 CPU cores and 6GB of memory.
2 # To be able to do this, we culled the input files and some stages of execution. 2 # To be able to do this, we culled the input files and some stages of execution.
3 # To limit the requirements you also need to use -e docker_minimal 3 # To limit the requirements you also need to use -e docker_minimal
4 4
5 genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz 5 genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz
6 taxid: 6954
6 reads: 7 reads:
7 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.1 8 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.1
8 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.2 9 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.2
9 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.1 10 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.1
10 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.2 11 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.2
11 taxid: 6954
12 proteins: []
13 hmm: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/gnomon/hmm_parameters/6956.params 12 hmm: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/gnomon/hmm_parameters/6956.params
14 tasks: 13 tasks:
15 star_wnode: 14 star_wnode:
16 star_wnode: -cpus-per-worker 4 15 star_wnode: -cpus-per-worker 4
17