comparison ncbi_egapx.xml @ 17:e0de8669b340 draft default tip

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx commit 39442b43654a912285459264a7aad1f19e00940a

16:d167f698d5e9

        #set genome_value = $cond_input_style.cond_genome_style.genome.fields.path
    #else
        #set genome_value = $cond_input_style.cond_genome_style.uri
    #end if
genome: $genome_value
taxid: $taxid
    #if str($cond_rnaseq_style.rnaseq_style) == "list"
        #set $reads_values = $rnaseq.split()
    #else
        #set $reads_values = $rnaseq
    #end if
reads:
    #for r in [x.strip() for x in $reads_values]
  - $r
    #end for
    #if str($proteins) != "None"
proteins: $proteins
    #end if
    #for row in $xtra.strip().split("\n")
$row
    #end for
#end if
        ]]></configfile>
    </configfiles>
    <inputs>
        <conditional name="cond_input_style">

                            <validator type="empty_field"/>
                        </param>
                    </when>
                </conditional>
                <param name="proteins" type="data" format="fasta,fasta.gz" optional="true" label="Select a protein set"/>
                <param name="xtra" type="text" area="true" label="Additional yaml to append to the egapx.yaml configuration"
                    help="Not normally needed but useful for testing additional configuration elements">
                    <sanitizer invalid_char="">
                        <valid initial="string.printable"/>
                    </sanitizer>
                </param>

17:e0de8669b340

        #set genome_value = $cond_input_style.cond_genome_style.genome.fields.path
    #else
        #set genome_value = $cond_input_style.cond_genome_style.uri
    #end if
genome: $genome_value
taxid: $cond_input_style.taxid
    #if str($cond_input_style.cond_rnaseq_style.rnaseq_style) == "history"
        #set reads_values = $cond_input_style.cond_rnaseq_style.rnaseq
    #else
        #set reads_values = $cond_input_style.cond_rnaseq_style.rnaseq.split()
    #end if
reads:
    #for r in [str(rv).strip() for rv in $reads_values]
  - $r
    #end for
    #if str($cond_input_style.proteins) != "None"
proteins: $cond_input_styleproteins
    #end if
    #if str($cond_input_style.xtra) != "None"
        #for row in str($cond_input_style.xtra).strip().split("\n")
$row
        #end for
    #end if
#end if
        ]]></configfile>
    </configfiles>
    <inputs>
        <conditional name="cond_input_style">

                            <validator type="empty_field"/>
                        </param>
                    </when>
                </conditional>
                <param name="proteins" type="data" format="fasta,fasta.gz" optional="true" label="Select a protein set"/>
                <param name="xtra" type="text" area="true" optional="true" label="Additional yaml to append to the egapx.yaml configuration"
                    help="Not normally needed but useful for testing additional configuration elements">
                    <sanitizer invalid_char="">
                        <valid initial="string.printable"/>
                    </sanitizer>
                </param>