diff test-data/input.yaml @ 18:83f9b1d86951 draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx commit 8214876a80a4416d2614c7227b22a436489f59cf

--- a/test-data/input.yaml	Mon Nov 18 17:24:04 2024 +0000
+++ b/test-data/input.yaml	Fri Dec 20 21:26:46 2024 +0000
@@ -1,15 +1,7 @@
-# This is a very minimal example of EGAPx, it fits into 4 CPU cores and 6GB of memory.
-# To be able to do this, we culled the input files and some stages of execution.
-# To limit the requirements you also need to use -e docker_minimal
-
-genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz
+genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/809/275/GCA_020809275.1_ASM2080927v1/GCA_020809275.1_ASM2080927v1_genomic.fna.gz
 taxid: 6954
 reads:
-  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.1
-  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.2
-  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.1
-  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.2
-hmm: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/gnomon/hmm_parameters/6956.params
-tasks:
-  star_wnode:
-    star_wnode: -cpus-per-worker 4
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572_1.gz
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572_2.gz
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248_1.gz
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248_2.gz