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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
author richard-burhans
date Fri, 01 Mar 2024 18:26:57 +0000
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d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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1 #!/usr/bin/env bash
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
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d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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3 export "PLANEMO_GLOBAL_CONFIG_PATH=/scratch/rico/.planemo"
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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4 export "PLANEMO_GLOBAL_WORKSPACE=/scratch/rico/.planemo"
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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6 rm -rf /tmp/tmp* /scratch/rico/.planemo
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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8 planemo \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
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9 --verbose \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
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10 test \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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11 --job_config_file=/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
parents:
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12 --no_cleanup \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
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13 --galaxy_root=/scratch/rico/galaxy 2>&1 \
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
richard-burhans
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14 | tee test.log
d55ad8533d58 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
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