Mercurial > repos > richard-burhans > ncbi_fcs_adaptor
comparison serve.log @ 0:d55ad8533d58 draft default tip
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
| author | richard-burhans |
|---|---|
| date | Fri, 01 Mar 2024 18:26:57 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:d55ad8533d58 |
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| 1 Created directory for Galaxy configuration [/tmp/tmpqrlh6ih1] | |
| 2 Writing dependency_resolvers_config_file to path /tmp/tmpqrlh6ih1/resolvers_conf.xml with contents [<dependency_resolvers> | |
| 3 <tool_shed_packages /> | |
| 4 <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> | |
| 5 <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> | |
| 6 </dependency_resolvers> | |
| 7 ] | |
| 8 Writing tool_conf to path /tmp/tmpqrlh6ih1/tool_conf.xml with contents [<toolbox> | |
| 9 <tool file="data_source/upload.xml" /> | |
| 10 <tool file="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/ncbi_fcs_adaptor.xml" /> | |
| 11 </toolbox> | |
| 12 ] | |
| 13 Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/scratch/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --server-name main] | |
| 14 With environment variables: | |
| 15 ============================ | |
| 16 GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key" | |
| 17 GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu" | |
| 18 GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True" | |
| 19 GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory" | |
| 20 GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True" | |
| 21 GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False" | |
| 22 GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True" | |
| 23 GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo" | |
| 24 GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True" | |
| 25 GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never" | |
| 26 GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org" | |
| 27 GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main" | |
| 28 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}" | |
| 29 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False" | |
| 30 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" | |
| 31 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data" | |
| 32 GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False" | |
| 33 GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/tmp/tmpqrlh6ih1/deps" | |
| 34 GALAXY_CONFIG_OVERRIDE_FILE_PATH="/tmp/tmpqrlh6ih1/files" | |
| 35 GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/tmp/tmpqrlh6ih1/tmp" | |
| 36 GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_conf.xml,/tmp/tmpqrlh6ih1/shed_tools_conf.xml" | |
| 37 GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_sheds_conf.xml" | |
| 38 GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False" | |
| 39 GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/tmp/tmpqrlh6ih1/job_working_directory" | |
| 40 GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/tmp/tmpqrlh6ih1/compiled_templates" | |
| 41 GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file" | |
| 42 GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/tmp/tmpqrlh6ih1/citations/data" | |
| 43 GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/tmp/tmpqrlh6ih1/citations/lock" | |
| 44 GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True" | |
| 45 GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True" | |
| 46 GALAXY_CONFIG_OVERRIDE_ID_SECRET="f6141d9059f331976b6b66b722a14f48" | |
| 47 GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG" | |
| 48 GALAXY_CONFIG_OVERRIDE_DEBUG="true" | |
| 49 GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto" | |
| 50 GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash" | |
| 51 GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml" | |
| 52 GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/tmp/tmpqrlh6ih1/empty_tool_conf.xml" | |
| 53 GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" | |
| 54 GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/tmp/tmpqrlh6ih1/shed_data_manager_conf.xml" | |
| 55 GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True" | |
| 56 GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid" | |
| 57 GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE" | |
| 58 GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml" | |
| 59 GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/tmp/tmpqrlh6ih1/job_metrics_conf.xml" | |
| 60 GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/tmp/tmpqrlh6ih1/resolvers_conf.xml" | |
| 61 GALAXY_DEVELOPMENT_ENVIRONMENT="1" | |
| 62 GALAXY_LOG="main.log" | |
| 63 GALAXY_PID="main.pid" | |
| 64 GALAXY_CONFIG_FILE="/tmp/tmpqrlh6ih1/galaxy.yml" | |
| 65 GRAVITY_STATE_DIR="/tmp/tmpqrlh6ih1/gravity" | |
| 66 SUPERVISORD_SOCKET="/tmp/tmpwpqnbgo4.sock" | |
| 67 ============================ | |
| 68 galaxy.util.commands WARNING 2024-02-23 14:19:34,170: Passing program arguments as a string may be a security hazard if combined with untrusted input | |
| 69 Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 | |
| 70 Virtual environment directory does not exist. | |
| 71 created virtual environment CPython3.7.3.final.0-64 in 1093ms | |
| 72 creator CPython3Posix(dest=/scratch/rico/.planemo/gx_venv_3, clear=False, no_vcs_ignore=False, global=False) | |
| 73 seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/afs/bx.psu.edu/home/rico/.local/share/virtualenv) | |
| 74 added seed packages: pip==23.3.2, setuptools==68.0.0, wheel==0.42.0 | |
| 75 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator | |
| 76 Created virtualenv | |
| 77 Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 | |
| 78 Virtual environment directory exists. | |
| 79 Activated a virtualenv for Galaxy | |
| 80 /scratch/rico/.planemo/gx_venv_3 | |
| 81 /scratch/rico/galaxy | |
| 82 /scratch/rico/.planemo/gx_venv_3/bin/python | |
| 83 /scratch/rico/.planemo/gx_venv_3/bin/pip | |
| 84 /scratch/rico/.planemo/gx_venv_3 | |
| 85 /scratch/rico/.planemo/gx_venv_3 | |
| 86 . | |
| 87 .. | |
| 88 check_model.sh | |
| 89 .ci | |
| 90 .circleci | |
| 91 CITATION | |
| 92 client | |
| 93 CODE_OF_CONDUCT.md | |
| 94 config | |
| 95 contrib | |
| 96 CONTRIBUTING.md | |
| 97 CONTRIBUTORS.md | |
| 98 .coveragerc | |
| 99 cron | |
| 100 database | |
| 101 doc | |
| 102 .dockerignore | |
| 103 extract_dataset_parts.sh | |
| 104 .flake8 | |
| 105 .git | |
| 106 .gitattributes | |
| 107 .git-blame-ignore-revs | |
| 108 .github | |
| 109 .gitignore | |
| 110 .gitpod.yml | |
| 111 hooks | |
| 112 .isort.cfg | |
| 113 .k8s_ci.Dockerfile | |
| 114 lib | |
| 115 LICENSE.txt | |
| 116 main.log | |
| 117 Makefile | |
| 118 manage_db.sh | |
| 119 manage_toolshed_db.sh | |
| 120 mypy.ini | |
| 121 package.json | |
| 122 packages | |
| 123 .pre-commit-config.yaml.sample | |
| 124 pyproject.toml | |
| 125 pytest.ini | |
| 126 README.rst | |
| 127 .redocly.lint-ignore.yaml | |
| 128 .redocly.yaml | |
| 129 requirements.txt | |
| 130 rolling_restart.sh | |
| 131 run_reports.sh | |
| 132 run.sh | |
| 133 run_tests.sh | |
| 134 run_tool_shed.sh | |
| 135 scripts | |
| 136 SECURITY.md | |
| 137 static | |
| 138 templates | |
| 139 test | |
| 140 test-data | |
| 141 tool-data | |
| 142 tools | |
| 143 tox.ini | |
| 144 tsconfig.json | |
| 145 .vscode | |
| 146 Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 | |
| 147 Requirement already satisfied: pip>=20.3 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (23.3.2) | |
| 148 Requirement already satisfied: wheel in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (0.42.0) | |
| 149 | |
| 150 [notice] A new release of pip is available: 23.3.2 -> 24.0 | |
| 151 [notice] To update, run: pip install --upgrade pip | |
| 152 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple | |
| 153 Ignoring billiard: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment | |
| 154 Ignoring celery: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment | |
| 155 Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment | |
| 156 Ignoring kombu: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment | |
| 157 Ignoring numpy: markers 'python_version >= "3.8" and python_version < "3.9"' don't match your environment | |
| 158 Ignoring numpy: markers 'python_version >= "3.9" and python_version < "3.12"' don't match your environment | |
| 159 Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment | |
| 160 Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment | |
| 161 Ignoring tzdata: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment | |
| 162 Collecting a2wsgi==1.7.0 (from -r requirements.txt (line 1)) | |
| 163 Using cached a2wsgi-1.7.0-py3-none-any.whl.metadata (1.6 kB) | |
| 164 Collecting adal==1.2.7 (from -r requirements.txt (line 2)) | |
| 165 Using cached adal-1.2.7-py2.py3-none-any.whl (55 kB) | |
| 166 Collecting aiobotocore==2.4.2 (from -r requirements.txt (line 3)) | |
| 167 Using cached aiobotocore-2.4.2-py3-none-any.whl.metadata (19 kB) | |
| 168 Collecting aiodataloader==0.4.0 (from -r requirements.txt (line 4)) | |
| 169 Using cached aiodataloader-0.4.0-py3-none-any.whl.metadata (16 kB) | |
| 170 Collecting aiofiles==23.2.1 (from -r requirements.txt (line 5)) | |
| 171 Using cached aiofiles-23.2.1-py3-none-any.whl.metadata (9.7 kB) | |
| 172 Collecting aiohttp==3.8.6 (from -r requirements.txt (line 6)) | |
| 173 Using cached aiohttp-3.8.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) | |
| 174 Collecting aioitertools==0.11.0 (from -r requirements.txt (line 7)) | |
| 175 Using cached aioitertools-0.11.0-py3-none-any.whl.metadata (3.3 kB) | |
| 176 Collecting aiosignal==1.3.1 (from -r requirements.txt (line 8)) | |
| 177 Using cached aiosignal-1.3.1-py3-none-any.whl.metadata (4.0 kB) | |
| 178 Collecting alembic==1.12.1 (from -r requirements.txt (line 9)) | |
| 179 Using cached alembic-1.12.1-py3-none-any.whl.metadata (7.3 kB) | |
| 180 Collecting amqp==5.2.0 (from -r requirements.txt (line 10)) | |
| 181 Using cached amqp-5.2.0-py3-none-any.whl.metadata (8.9 kB) | |
| 182 Collecting aniso8601==9.0.1 (from -r requirements.txt (line 11)) | |
| 183 Using cached aniso8601-9.0.1-py2.py3-none-any.whl (52 kB) | |
| 184 Collecting anyio==3.7.1 (from -r requirements.txt (line 12)) | |
| 185 Using cached anyio-3.7.1-py3-none-any.whl.metadata (4.7 kB) | |
| 186 Collecting apispec==6.3.0 (from -r requirements.txt (line 13)) | |
| 187 Using cached apispec-6.3.0-py3-none-any.whl.metadata (11 kB) | |
| 188 Collecting appdirs==1.4.4 (from -r requirements.txt (line 14)) | |
| 189 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) | |
| 190 Collecting arcp==0.2.1 (from -r requirements.txt (line 15)) | |
| 191 Using cached arcp-0.2.1-py2.py3-none-any.whl (15 kB) | |
| 192 Collecting argcomplete==3.1.2 (from -r requirements.txt (line 16)) | |
| 193 Using cached argcomplete-3.1.2-py3-none-any.whl.metadata (16 kB) | |
| 194 Collecting async-timeout==4.0.3 (from -r requirements.txt (line 17)) | |
| 195 Using cached async_timeout-4.0.3-py3-none-any.whl.metadata (4.2 kB) | |
| 196 Collecting asynctest==0.13.0 (from -r requirements.txt (line 18)) | |
| 197 Using cached asynctest-0.13.0-py3-none-any.whl (26 kB) | |
| 198 Collecting attmap==0.13.2 (from -r requirements.txt (line 19)) | |
| 199 Using cached attmap-0.13.2-py3-none-any.whl (12 kB) | |
| 200 Collecting attrs==23.1.0 (from -r requirements.txt (line 20)) | |
| 201 Using cached attrs-23.1.0-py3-none-any.whl.metadata (11 kB) | |
| 202 Collecting babel==2.13.1 (from -r requirements.txt (line 21)) | |
| 203 Using cached Babel-2.13.1-py3-none-any.whl.metadata (1.6 kB) | |
| 204 Collecting backports-zoneinfo==0.2.1 (from -r requirements.txt (line 22)) | |
| 205 Using cached backports.zoneinfo-0.2.1-cp37-cp37m-manylinux1_x86_64.whl (70 kB) | |
| 206 Collecting bagit-profile==1.3.1 (from -r requirements.txt (line 23)) | |
| 207 Using cached bagit_profile-1.3.1-py3-none-any.whl (14 kB) | |
| 208 Collecting bagit==1.8.1 (from -r requirements.txt (line 24)) | |
| 209 Using cached bagit-1.8.1-py2.py3-none-any.whl (35 kB) | |
| 210 Collecting bcrypt==4.0.1 (from -r requirements.txt (line 25)) | |
| 211 Using cached bcrypt-4.0.1-cp36-abi3-manylinux_2_28_x86_64.whl.metadata (9.0 kB) | |
| 212 Collecting bdbag==1.7.1 (from -r requirements.txt (line 26)) | |
| 213 Using cached bdbag-1.7.1-py2.py3-none-any.whl.metadata (7.8 kB) | |
| 214 Collecting beaker==1.12.1 (from -r requirements.txt (line 27)) | |
| 215 Using cached Beaker-1.12.1-py3-none-any.whl | |
| 216 Collecting billiard==3.6.4.0 (from -r requirements.txt (line 28)) | |
| 217 Using cached billiard-3.6.4.0-py3-none-any.whl (89 kB) | |
| 218 Collecting bioblend==1.2.0 (from -r requirements.txt (line 30)) | |
| 219 Using cached bioblend-1.2.0-py2.py3-none-any.whl.metadata (2.3 kB) | |
| 220 Collecting bleach==6.0.0 (from -r requirements.txt (line 31)) | |
| 221 Using cached bleach-6.0.0-py3-none-any.whl.metadata (29 kB) | |
| 222 Collecting boltons==23.1.1 (from -r requirements.txt (line 32)) | |
| 223 Using cached boltons-23.1.1-py2.py3-none-any.whl.metadata (1.4 kB) | |
| 224 Collecting boto==2.49.0 (from -r requirements.txt (line 33)) | |
| 225 Using cached boto-2.49.0-py2.py3-none-any.whl (1.4 MB) | |
| 226 Collecting botocore==1.27.59 (from -r requirements.txt (line 34)) | |
| 227 Using cached botocore-1.27.59-py3-none-any.whl.metadata (5.9 kB) | |
| 228 Collecting bx-python==0.10.0 (from -r requirements.txt (line 35)) | |
| 229 Using cached bx_python-0.10.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) | |
| 230 Collecting cachecontrol==0.13.1 (from cachecontrol[filecache]==0.13.1->-r requirements.txt (line 36)) | |
| 231 Using cached cachecontrol-0.13.1-py3-none-any.whl.metadata (3.0 kB) | |
| 232 Collecting cached-property==1.5.2 (from -r requirements.txt (line 37)) | |
| 233 Using cached cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) | |
| 234 Collecting celery==5.2.7 (from -r requirements.txt (line 38)) | |
| 235 Using cached celery-5.2.7-py3-none-any.whl.metadata (20 kB) | |
| 236 Collecting certifi==2023.11.17 (from -r requirements.txt (line 40)) | |
| 237 Using cached certifi-2023.11.17-py3-none-any.whl.metadata (2.2 kB) | |
| 238 Collecting cffi==1.15.1 (from -r requirements.txt (line 41)) | |
| 239 Using cached cffi-1.15.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.1 kB) | |
| 240 Collecting charset-normalizer==3.3.2 (from -r requirements.txt (line 42)) | |
| 241 Using cached charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) | |
| 242 Collecting cheetah3==3.2.6.post1 (from -r requirements.txt (line 43)) | |
| 243 Using cached https://wheels.galaxyproject.org/simple/cheetah3/Cheetah3-3.2.6.post1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (199 kB) | |
| 244 Collecting circus==0.18.0 (from -r requirements.txt (line 44)) | |
| 245 Using cached circus-0.18.0-py3-none-any.whl.metadata (2.0 kB) | |
| 246 Collecting click-didyoumean==0.3.0 (from -r requirements.txt (line 45)) | |
| 247 Using cached click_didyoumean-0.3.0-py3-none-any.whl (2.7 kB) | |
| 248 Collecting click-plugins==1.1.1 (from -r requirements.txt (line 46)) | |
| 249 Using cached click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB) | |
| 250 Collecting click-repl==0.3.0 (from -r requirements.txt (line 47)) | |
| 251 Using cached click_repl-0.3.0-py3-none-any.whl.metadata (3.6 kB) | |
| 252 Collecting click==8.1.7 (from -r requirements.txt (line 48)) | |
| 253 Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) | |
| 254 Collecting cloudauthz==0.6.0 (from -r requirements.txt (line 49)) | |
| 255 Using cached cloudauthz-0.6.0-py2.py3-none-any.whl (8.9 kB) | |
| 256 Collecting cloudbridge==3.2.0 (from -r requirements.txt (line 50)) | |
| 257 Using cached cloudbridge-3.2.0-py2.py3-none-any.whl.metadata (5.0 kB) | |
| 258 Collecting coloredlogs==15.0.1 (from -r requirements.txt (line 52)) | |
| 259 Using cached coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) | |
| 260 Collecting conda-package-streaming==0.9.0 (from -r requirements.txt (line 53)) | |
| 261 Using cached conda_package_streaming-0.9.0-py3-none-any.whl.metadata (4.5 kB) | |
| 262 Collecting cryptography==41.0.5 (from -r requirements.txt (line 54)) | |
| 263 Using cached cryptography-41.0.5-cp37-abi3-manylinux_2_28_x86_64.whl.metadata (5.2 kB) | |
| 264 Collecting cwl-upgrader==1.2.8 (from -r requirements.txt (line 55)) | |
| 265 Using cached cwl_upgrader-1.2.8-py3-none-any.whl.metadata (2.5 kB) | |
| 266 Collecting cwl-utils==0.28 (from -r requirements.txt (line 56)) | |
| 267 Using cached cwl_utils-0.28-py3-none-any.whl.metadata (7.1 kB) | |
| 268 Collecting cwltool==3.1.20221109155812 (from -r requirements.txt (line 57)) | |
| 269 Using cached cwltool-3.1.20221109155812-py3-none-any.whl.metadata (40 kB) | |
| 270 Collecting decorator==5.1.1 (from -r requirements.txt (line 58)) | |
| 271 Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) | |
| 272 Collecting defusedxml==0.7.1 (from -r requirements.txt (line 59)) | |
| 273 Using cached defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) | |
| 274 Collecting deprecation==2.1.0 (from -r requirements.txt (line 60)) | |
| 275 Using cached deprecation-2.1.0-py2.py3-none-any.whl (11 kB) | |
| 276 Collecting dictobj==0.4 (from -r requirements.txt (line 61)) | |
| 277 Using cached dictobj-0.4-py3-none-any.whl | |
| 278 Collecting dnspython==2.3.0 (from -r requirements.txt (line 62)) | |
| 279 Using cached dnspython-2.3.0-py3-none-any.whl.metadata (5.2 kB) | |
| 280 Collecting docopt==0.6.2 (from -r requirements.txt (line 63)) | |
| 281 Using cached https://wheels.galaxyproject.org/simple/docopt/docopt-0.6.2-py2.py3-none-any.whl (19 kB) | |
| 282 Collecting docutils==0.18.1 (from -r requirements.txt (line 64)) | |
| 283 Using cached docutils-0.18.1-py2.py3-none-any.whl (570 kB) | |
| 284 Collecting dparse==0.6.3 (from -r requirements.txt (line 65)) | |
| 285 Using cached dparse-0.6.3-py3-none-any.whl.metadata (7.4 kB) | |
| 286 Collecting ecdsa==0.18.0 (from -r requirements.txt (line 66)) | |
| 287 Using cached ecdsa-0.18.0-py2.py3-none-any.whl.metadata (29 kB) | |
| 288 Collecting edam-ontology==1.25.2 (from -r requirements.txt (line 67)) | |
| 289 Using cached edam_ontology-1.25.2-py2.py3-none-any.whl (262 kB) | |
| 290 Collecting email-validator==2.0.0.post2 (from -r requirements.txt (line 68)) | |
| 291 Using cached email_validator-2.0.0.post2-py3-none-any.whl.metadata (25 kB) | |
| 292 Collecting exceptiongroup==1.2.0 (from -r requirements.txt (line 69)) | |
| 293 Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB) | |
| 294 Collecting fastapi-utils==0.2.1 (from -r requirements.txt (line 70)) | |
| 295 Using cached fastapi_utils-0.2.1-py3-none-any.whl (16 kB) | |
| 296 Collecting fastapi==0.98.0 (from -r requirements.txt (line 71)) | |
| 297 Using cached fastapi-0.98.0-py3-none-any.whl.metadata (22 kB) | |
| 298 Collecting filelock==3.12.2 (from -r requirements.txt (line 72)) | |
| 299 Using cached filelock-3.12.2-py3-none-any.whl.metadata (2.7 kB) | |
| 300 Collecting frozenlist==1.3.3 (from -r requirements.txt (line 73)) | |
| 301 Using cached frozenlist-1.3.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.7 kB) | |
| 302 Collecting fs==2.4.16 (from -r requirements.txt (line 74)) | |
| 303 Using cached fs-2.4.16-py2.py3-none-any.whl.metadata (6.3 kB) | |
| 304 Collecting fsspec==2023.1.0 (from -r requirements.txt (line 75)) | |
| 305 Using cached fsspec-2023.1.0-py3-none-any.whl.metadata (5.5 kB) | |
| 306 Collecting future==0.18.3 (from -r requirements.txt (line 76)) | |
| 307 Using cached future-0.18.3-py3-none-any.whl | |
| 308 Collecting galaxy-sequence-utils==1.1.5 (from -r requirements.txt (line 77)) | |
| 309 Using cached galaxy_sequence_utils-1.1.5-py2.py3-none-any.whl (37 kB) | |
| 310 Collecting galaxy2cwl==0.1.4 (from -r requirements.txt (line 78)) | |
| 311 Using cached galaxy2cwl-0.1.4-py3-none-any.whl (8.2 kB) | |
| 312 Collecting graphene-sqlalchemy==3.0.0b3 (from -r requirements.txt (line 79)) | |
| 313 Using cached graphene_sqlalchemy-3.0.0b3-py2.py3-none-any.whl.metadata (4.2 kB) | |
| 314 Collecting graphene==3.3 (from -r requirements.txt (line 80)) | |
| 315 Using cached graphene-3.3-py2.py3-none-any.whl.metadata (7.7 kB) | |
| 316 Collecting graphql-core==3.2.3 (from -r requirements.txt (line 81)) | |
| 317 Using cached graphql_core-3.2.3-py3-none-any.whl.metadata (10 kB) | |
| 318 Collecting graphql-relay==3.2.0 (from -r requirements.txt (line 82)) | |
| 319 Using cached graphql_relay-3.2.0-py3-none-any.whl.metadata (12 kB) | |
| 320 Collecting gravity==1.0.4 (from -r requirements.txt (line 83)) | |
| 321 Using cached gravity-1.0.4-py3-none-any.whl.metadata (14 kB) | |
| 322 Collecting greenlet==2.0.2 (from -r requirements.txt (line 84)) | |
| 323 Using cached greenlet-2.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB) | |
| 324 Collecting gunicorn==21.2.0 (from -r requirements.txt (line 85)) | |
| 325 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) | |
| 326 Collecting gxformat2==0.18.0 (from -r requirements.txt (line 86)) | |
| 327 Using cached gxformat2-0.18.0-py2.py3-none-any.whl.metadata (11 kB) | |
| 328 Collecting h11==0.14.0 (from -r requirements.txt (line 87)) | |
| 329 Using cached h11-0.14.0-py3-none-any.whl.metadata (8.2 kB) | |
| 330 Collecting h5grove==1.3.0 (from -r requirements.txt (line 88)) | |
| 331 Using cached h5grove-1.3.0-py3-none-any.whl.metadata (3.4 kB) | |
| 332 Collecting h5py==3.8.0 (from -r requirements.txt (line 89)) | |
| 333 Using cached h5py-3.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) | |
| 334 Collecting humanfriendly==10.0 (from -r requirements.txt (line 90)) | |
| 335 Using cached humanfriendly-10.0-py2.py3-none-any.whl (86 kB) | |
| 336 Collecting idna==3.5 (from -r requirements.txt (line 91)) | |
| 337 Using cached idna-3.5-py3-none-any.whl.metadata (9.9 kB) | |
| 338 Collecting importlib-metadata==4.13.0 (from -r requirements.txt (line 92)) | |
| 339 Using cached importlib_metadata-4.13.0-py3-none-any.whl.metadata (4.9 kB) | |
| 340 Collecting importlib-resources==5.12.0 (from -r requirements.txt (line 93)) | |
| 341 Using cached importlib_resources-5.12.0-py3-none-any.whl.metadata (4.1 kB) | |
| 342 Collecting isa-rwval==0.10.10 (from -r requirements.txt (line 94)) | |
| 343 Using cached isa_rwval-0.10.10-py2.py3-none-any.whl (50 kB) | |
| 344 Collecting isal==1.3.0 (from -r requirements.txt (line 95)) | |
| 345 Using cached isal-1.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.7 kB) | |
| 346 Collecting isodate==0.6.1 (from -r requirements.txt (line 96)) | |
| 347 Using cached isodate-0.6.1-py2.py3-none-any.whl (41 kB) | |
| 348 Collecting jinja2==3.1.2 (from -r requirements.txt (line 97)) | |
| 349 Using cached Jinja2-3.1.2-py3-none-any.whl.metadata (3.5 kB) | |
| 350 Collecting jmespath==1.0.1 (from -r requirements.txt (line 98)) | |
| 351 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) | |
| 352 Collecting jsonref==1.1.0 (from -r requirements.txt (line 99)) | |
| 353 Using cached jsonref-1.1.0-py3-none-any.whl.metadata (2.7 kB) | |
| 354 Collecting jsonschema==4.17.3 (from -r requirements.txt (line 100)) | |
| 355 Using cached jsonschema-4.17.3-py3-none-any.whl.metadata (7.9 kB) | |
| 356 Collecting kombu==5.2.4 (from -r requirements.txt (line 101)) | |
| 357 Using cached kombu-5.2.4-py3-none-any.whl.metadata (2.7 kB) | |
| 358 Collecting lagom==2.6.0 (from -r requirements.txt (line 103)) | |
| 359 Using cached lagom-2.6.0-py3-none-any.whl.metadata (6.6 kB) | |
| 360 Collecting lxml==4.9.3 (from -r requirements.txt (line 104)) | |
| 361 Using cached lxml-4.9.3-cp37-cp37m-manylinux_2_28_x86_64.whl.metadata (3.8 kB) | |
| 362 Collecting mako==1.2.4 (from -r requirements.txt (line 105)) | |
| 363 Using cached Mako-1.2.4-py3-none-any.whl.metadata (2.9 kB) | |
| 364 Collecting markdown-it-py==2.2.0 (from -r requirements.txt (line 106)) | |
| 365 Using cached markdown_it_py-2.2.0-py3-none-any.whl.metadata (6.8 kB) | |
| 366 Collecting markdown==3.4.4 (from -r requirements.txt (line 107)) | |
| 367 Using cached Markdown-3.4.4-py3-none-any.whl.metadata (6.9 kB) | |
| 368 Collecting markupsafe==2.1.3 (from -r requirements.txt (line 108)) | |
| 369 Using cached MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) | |
| 370 Collecting mdurl==0.1.2 (from -r requirements.txt (line 109)) | |
| 371 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) | |
| 372 Collecting mercurial==6.6 (from -r requirements.txt (line 110)) | |
| 373 Using cached https://wheels.galaxyproject.org/simple/mercurial/mercurial-6.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.2 MB) | |
| 374 Collecting mistune==2.0.5 (from -r requirements.txt (line 111)) | |
| 375 Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB) | |
| 376 Collecting mrcfile==1.4.3 (from -r requirements.txt (line 112)) | |
| 377 Using cached mrcfile-1.4.3-py2.py3-none-any.whl.metadata (6.8 kB) | |
| 378 Collecting msal==1.25.0 (from -r requirements.txt (line 113)) | |
| 379 Using cached msal-1.25.0-py2.py3-none-any.whl.metadata (11 kB) | |
| 380 Collecting msgpack==1.0.5 (from -r requirements.txt (line 114)) | |
| 381 Using cached msgpack-1.0.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.8 kB) | |
| 382 Collecting multidict==6.0.4 (from -r requirements.txt (line 115)) | |
| 383 Using cached multidict-6.0.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB) | |
| 384 Collecting mypy-extensions==1.0.0 (from -r requirements.txt (line 116)) | |
| 385 Using cached mypy_extensions-1.0.0-py3-none-any.whl.metadata (1.1 kB) | |
| 386 Collecting networkx==2.5 (from -r requirements.txt (line 117)) | |
| 387 Using cached networkx-2.5-py3-none-any.whl (1.6 MB) | |
| 388 Collecting nodeenv==1.8.0 (from -r requirements.txt (line 118)) | |
| 389 Using cached nodeenv-1.8.0-py2.py3-none-any.whl.metadata (21 kB) | |
| 390 Collecting numpy==1.21.6 (from -r requirements.txt (line 119)) | |
| 391 Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (2.1 kB) | |
| 392 Collecting oauthlib==3.2.2 (from -r requirements.txt (line 122)) | |
| 393 Using cached oauthlib-3.2.2-py3-none-any.whl.metadata (7.5 kB) | |
| 394 Collecting orjson==3.9.7 (from -r requirements.txt (line 123)) | |
| 395 Using cached orjson-3.9.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (49 kB) | |
| 396 Collecting oyaml==1.0 (from -r requirements.txt (line 124)) | |
| 397 Using cached oyaml-1.0-py2.py3-none-any.whl (3.0 kB) | |
| 398 Collecting packaging==23.2 (from -r requirements.txt (line 125)) | |
| 399 Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB) | |
| 400 Collecting paramiko==3.3.1 (from -r requirements.txt (line 126)) | |
| 401 Using cached paramiko-3.3.1-py3-none-any.whl.metadata (4.4 kB) | |
| 402 Collecting parsley==1.3 (from -r requirements.txt (line 127)) | |
| 403 Using cached Parsley-1.3-py2.py3-none-any.whl (88 kB) | |
| 404 Collecting paste==3.7.1 (from -r requirements.txt (line 128)) | |
| 405 Using cached Paste-3.7.1-py3-none-any.whl.metadata (4.9 kB) | |
| 406 Collecting pastedeploy==3.1.0 (from -r requirements.txt (line 129)) | |
| 407 Using cached PasteDeploy-3.1.0-py3-none-any.whl.metadata (2.7 kB) | |
| 408 Collecting pebble==5.0.4 (from -r requirements.txt (line 130)) | |
| 409 Using cached Pebble-5.0.4-py3-none-any.whl.metadata (3.6 kB) | |
| 410 Collecting pkgutil-resolve-name==1.3.10 (from -r requirements.txt (line 131)) | |
| 411 Using cached pkgutil_resolve_name-1.3.10-py3-none-any.whl (4.7 kB) | |
| 412 Collecting promise==2.3 (from -r requirements.txt (line 132)) | |
| 413 Using cached promise-2.3-py3-none-any.whl | |
| 414 Collecting prompt-toolkit==3.0.41 (from -r requirements.txt (line 133)) | |
| 415 Using cached prompt_toolkit-3.0.41-py3-none-any.whl.metadata (6.5 kB) | |
| 416 Collecting prov==1.5.1 (from -r requirements.txt (line 134)) | |
| 417 Using cached prov-1.5.1-py2.py3-none-any.whl (426 kB) | |
| 418 Collecting psutil==5.9.6 (from -r requirements.txt (line 135)) | |
| 419 Using cached psutil-5.9.6-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB) | |
| 420 Collecting pulsar-galaxy-lib==0.15.5 (from -r requirements.txt (line 136)) | |
| 421 Using cached pulsar_galaxy_lib-0.15.5-py2.py3-none-any.whl.metadata (33 kB) | |
| 422 Collecting pyasn1==0.5.1 (from -r requirements.txt (line 137)) | |
| 423 Using cached pyasn1-0.5.1-py2.py3-none-any.whl.metadata (8.6 kB) | |
| 424 Collecting pycparser==2.21 (from -r requirements.txt (line 138)) | |
| 425 Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) | |
| 426 Collecting pycryptodome==3.19.0 (from -r requirements.txt (line 139)) | |
| 427 Using cached pycryptodome-3.19.0-cp35-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) | |
| 428 Collecting pydantic-tes==0.1.5 (from -r requirements.txt (line 140)) | |
| 429 Using cached pydantic_tes-0.1.5-py2.py3-none-any.whl.metadata (2.9 kB) | |
| 430 Collecting pydantic==1.10.13 (from -r requirements.txt (line 141)) | |
| 431 Using cached pydantic-1.10.13-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (149 kB) | |
| 432 Collecting pydot==1.4.2 (from -r requirements.txt (line 143)) | |
| 433 Using cached pydot-1.4.2-py2.py3-none-any.whl (21 kB) | |
| 434 Collecting pyeventsystem==0.1.0 (from -r requirements.txt (line 144)) | |
| 435 Using cached pyeventsystem-0.1.0-py2.py3-none-any.whl (15 kB) | |
| 436 Collecting pyfaidx==0.7.2.2 (from -r requirements.txt (line 145)) | |
| 437 Using cached pyfaidx-0.7.2.2-py3-none-any.whl.metadata (25 kB) | |
| 438 Collecting pygments==2.17.2 (from -r requirements.txt (line 146)) | |
| 439 Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) | |
| 440 Collecting pyjwt==2.8.0 (from -r requirements.txt (line 147)) | |
| 441 Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) | |
| 442 Collecting pykwalify==1.8.0 (from -r requirements.txt (line 149)) | |
| 443 Using cached pykwalify-1.8.0-py2.py3-none-any.whl (24 kB) | |
| 444 Collecting pylibmagic==0.5.0 (from -r requirements.txt (line 150)) | |
| 445 Using cached pylibmagic-0.5.0-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.5 kB) | |
| 446 Collecting pynacl==1.5.0 (from -r requirements.txt (line 151)) | |
| 447 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) | |
| 448 Collecting pyparsing==3.0.9 (from -r requirements.txt (line 152)) | |
| 449 Using cached pyparsing-3.0.9-py3-none-any.whl.metadata (4.2 kB) | |
| 450 Collecting pyrsistent==0.19.3 (from -r requirements.txt (line 155)) | |
| 451 Using cached pyrsistent-0.19.3-py3-none-any.whl.metadata (27 kB) | |
| 452 Collecting pysam==0.22.0 (from -r requirements.txt (line 156)) | |
| 453 Using cached pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl.metadata (1.5 kB) | |
| 454 Collecting python-dateutil==2.8.2 (from -r requirements.txt (line 157)) | |
| 455 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) | |
| 456 Collecting python-jose==3.3.0 (from -r requirements.txt (line 158)) | |
| 457 Using cached python_jose-3.3.0-py2.py3-none-any.whl (33 kB) | |
| 458 Collecting python-magic==0.4.27 (from -r requirements.txt (line 159)) | |
| 459 Using cached python_magic-0.4.27-py2.py3-none-any.whl.metadata (5.8 kB) | |
| 460 Collecting python-multipart==0.0.7 (from -r requirements.txt (line 160)) | |
| 461 Using cached python_multipart-0.0.7-py3-none-any.whl.metadata (2.5 kB) | |
| 462 Collecting python3-openid==3.2.0 (from -r requirements.txt (line 161)) | |
| 463 Using cached python3_openid-3.2.0-py3-none-any.whl (133 kB) | |
| 464 Collecting pytz==2023.3.post1 (from -r requirements.txt (line 162)) | |
| 465 Using cached pytz-2023.3.post1-py2.py3-none-any.whl.metadata (22 kB) | |
| 466 Collecting pyyaml==6.0.1 (from -r requirements.txt (line 163)) | |
| 467 Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) | |
| 468 Collecting pyzmq==25.1.1 (from -r requirements.txt (line 164)) | |
| 469 Using cached pyzmq-25.1.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (4.9 kB) | |
| 470 Collecting rdflib==6.2.0 (from -r requirements.txt (line 165)) | |
| 471 Using cached rdflib-6.2.0-py3-none-any.whl.metadata (10 kB) | |
| 472 Collecting refgenconf==0.12.2 (from -r requirements.txt (line 166)) | |
| 473 Using cached refgenconf-0.12.2-py3-none-any.whl (72 kB) | |
| 474 Collecting regex==2023.10.3 (from -r requirements.txt (line 167)) | |
| 475 Using cached regex-2023.10.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (40 kB) | |
| 476 Collecting repoze-lru==0.7 (from -r requirements.txt (line 168)) | |
| 477 Using cached repoze.lru-0.7-py3-none-any.whl (10 kB) | |
| 478 Collecting requests-oauthlib==1.3.1 (from -r requirements.txt (line 169)) | |
| 479 Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl.metadata (10 kB) | |
| 480 Collecting requests-toolbelt==1.0.0 (from -r requirements.txt (line 170)) | |
| 481 Using cached requests_toolbelt-1.0.0-py2.py3-none-any.whl.metadata (14 kB) | |
| 482 Collecting requests-unixsocket==0.3.0 (from -r requirements.txt (line 171)) | |
| 483 Using cached requests_unixsocket-0.3.0-py2.py3-none-any.whl (11 kB) | |
| 484 Collecting requests==2.31.0 (from -r requirements.txt (line 172)) | |
| 485 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) | |
| 486 Collecting rich==13.7.0 (from -r requirements.txt (line 173)) | |
| 487 Using cached rich-13.7.0-py3-none-any.whl.metadata (18 kB) | |
| 488 Collecting rocrate==0.9.0 (from -r requirements.txt (line 174)) | |
| 489 Using cached rocrate-0.9.0-py3-none-any.whl.metadata (15 kB) | |
| 490 Collecting routes==2.5.1 (from -r requirements.txt (line 175)) | |
| 491 Using cached Routes-2.5.1-py2.py3-none-any.whl (40 kB) | |
| 492 Collecting rsa==4.9 (from -r requirements.txt (line 176)) | |
| 493 Using cached rsa-4.9-py3-none-any.whl.metadata (4.2 kB) | |
| 494 Collecting ruamel-yaml-clib==0.2.8 (from -r requirements.txt (line 177)) | |
| 495 Using cached ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) | |
| 496 Collecting ruamel-yaml==0.17.21 (from -r requirements.txt (line 178)) | |
| 497 Using cached ruamel.yaml-0.17.21-py3-none-any.whl.metadata (13 kB) | |
| 498 Collecting s3fs==2023.1.0 (from -r requirements.txt (line 179)) | |
| 499 Using cached s3fs-2023.1.0-py3-none-any.whl.metadata (1.5 kB) | |
| 500 Collecting schema-salad==8.4.20230808163024 (from -r requirements.txt (line 180)) | |
| 501 Using cached schema_salad-8.4.20230808163024-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) | |
| 502 Collecting setuptools-scm==5.0.2 (from -r requirements.txt (line 181)) | |
| 503 Using cached setuptools_scm-5.0.2-py2.py3-none-any.whl (29 kB) | |
| 504 Requirement already satisfied: setuptools==68.0.0 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (from -r requirements.txt (line 182)) (68.0.0) | |
| 505 Collecting shellescape==3.8.1 (from -r requirements.txt (line 183)) | |
| 506 Using cached shellescape-3.8.1-py2.py3-none-any.whl (3.1 kB) | |
| 507 Collecting six==1.16.0 (from -r requirements.txt (line 184)) | |
| 508 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
| 509 Collecting sniffio==1.3.0 (from -r requirements.txt (line 185)) | |
| 510 Using cached sniffio-1.3.0-py3-none-any.whl.metadata (3.6 kB) | |
| 511 Collecting social-auth-core==4.0.3 (from social-auth-core[openidconnect]==4.0.3->-r requirements.txt (line 186)) | |
| 512 Using cached social_auth_core-4.0.3-py3-none-any.whl (328 kB) | |
| 513 Collecting sortedcontainers==2.4.0 (from -r requirements.txt (line 187)) | |
| 514 Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB) | |
| 515 Collecting sqlalchemy==1.4.50 (from -r requirements.txt (line 188)) | |
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| 517 Collecting sqlitedict==2.1.0 (from -r requirements.txt (line 189)) | |
| 518 Using cached sqlitedict-2.1.0-py3-none-any.whl | |
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| 652 Using cached MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) | |
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| 662 Using cached oauthlib-3.2.2-py3-none-any.whl (151 kB) | |
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| 665 Using cached paramiko-3.3.1-py3-none-any.whl (224 kB) | |
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| 667 Using cached PasteDeploy-3.1.0-py3-none-any.whl (16 kB) | |
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| 670 Using cached psutil-5.9.6-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (283 kB) | |
| 671 Using cached pulsar_galaxy_lib-0.15.5-py2.py3-none-any.whl (200 kB) | |
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| 674 Using cached pydantic_tes-0.1.5-py2.py3-none-any.whl (12 kB) | |
| 675 Using cached pydantic-1.10.13-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) | |
| 676 Using cached pyfaidx-0.7.2.2-py3-none-any.whl (28 kB) | |
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| 678 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) | |
| 679 Using cached pylibmagic-0.5.0-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (619 kB) | |
| 680 Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) | |
| 681 Using cached pyrsistent-0.19.3-py3-none-any.whl (57 kB) | |
| 682 Using cached pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl (23.6 MB) | |
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| 684 Using cached python_multipart-0.0.7-py3-none-any.whl (22 kB) | |
| 685 Using cached pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) | |
| 686 Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (670 kB) | |
| 687 Using cached pyzmq-25.1.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.1 MB) | |
| 688 Using cached rdflib-6.2.0-py3-none-any.whl (500 kB) | |
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| 691 Using cached requests_toolbelt-1.0.0-py2.py3-none-any.whl (54 kB) | |
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| 693 Using cached rich-13.7.0-py3-none-any.whl (240 kB) | |
| 694 Using cached rocrate-0.9.0-py3-none-any.whl (325 kB) | |
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| 696 Using cached ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (551 kB) | |
| 697 Using cached ruamel.yaml-0.17.21-py3-none-any.whl (109 kB) | |
| 698 Using cached s3fs-2023.1.0-py3-none-any.whl (27 kB) | |
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| 703 Using cached starlette_context-0.3.5-py37-none-any.whl (12 kB) | |
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| 705 Using cached starlette-0.27.0-py3-none-any.whl (66 kB) | |
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| 707 Using cached svgwrite-1.4.3-py3-none-any.whl (67 kB) | |
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| 709 Using cached tinydb-4.8.0-py3-none-any.whl (24 kB) | |
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| 712 Using cached tqdm-4.66.1-py3-none-any.whl (78 kB) | |
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| 714 Using cached tuswsgi-0.5.5-py2.py3-none-any.whl (6.9 kB) | |
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| 724 Using cached yacman-0.9.2-py3-none-any.whl (18 kB) | |
| 725 Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) | |
| 726 Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) | |
| 727 Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) | |
| 728 Installing collected packages: zipstream-new, whoosh, webencodings, wcwidth, ubiquerg, sqlitedict, sortedcontainers, shellescape, repoze-lru, pytz, pyeventsystem, parsley, msgpack, mistune, mercurial, edam-ontology, docopt, dictobj, cached-property, boto, boltons, billiard, beaker, bagit, arcp, appdirs, aniso8601, zstandard, zipp, wrapt, webob, vine, uvloop, urllib3, typing-extensions, tqdm, tornado, tomli, tinydb, tenacity, svgwrite, supervisor, sqlparse, sniffio, six, setuptools-scm, ruamel-yaml-clib, regex, pyzmq, pyyaml, python-multipart, python-magic, pysam, pyrsistent, pyparsing, pygments, pycryptodome, pycparser, pyasn1, psutil, prompt-toolkit, pkgutil-resolve-name, pebble, packaging, orjson, oauthlib, numpy, nodeenv, mypy-extensions, multidict, mdurl, markupsafe, lxml, lagom, jsonref, jmespath, isal, idna, humanfriendly, greenlet, future, fsspec, frozenlist, filelock, exceptiongroup, docutils, dnspython, defusedxml, decorator, cheetah3, charset-normalizer, certifi, bcrypt, backports-zoneinfo, babel, attmap, asynctest, aiofiles, a2wsgi, yarl, tzlocal, tuswsgi, tifffile, ruamel-yaml, rsa, routes, requests, python3-openid, python-dateutil, pyjwt, pydot, pydantic, promise, paste, oyaml, networkx, mrcfile, markdown-it-py, jinja2, isodate, importlib-resources, importlib-metadata, h5py, h11, graphql-core, galaxy-sequence-utils, fs, email-validator, ecdsa, dparse, deprecation, coloredlogs, circus, cffi, bx-python, bleach, async-timeout, apispec, anyio, amqp, aiosignal, aioitertools, aiodataloader, starlette, sqlalchemy, rich, requests-unixsocket, requests-toolbelt, requests-oauthlib, rdflib, python-jose, pynacl, pylibmagic, pykwalify, pyfaidx, pydantic-tes, pastedeploy, markdown, mako, kombu, isa-rwval, h5grove, gunicorn, graphql-relay, cryptography, conda-package-streaming, cloudbridge, click, cachecontrol, botocore, bagit-profile, attrs, argcomplete, uvicorn, starlette-context, social-auth-core, prov, paramiko, jsonschema, gravity, graphene, fastapi, click-repl, click-plugins, click-didyoumean, bdbag, alembic, aiohttp, adal, yacman, tuspy, starlette-graphene3, schema-salad, pulsar-galaxy-lib, msal, graphene-sqlalchemy, fastapi-utils, cloudauthz, celery, aiobotocore, s3fs, refgenconf, cwl-upgrader, bioblend, gxformat2, cwl-utils, galaxy2cwl, cwltool, rocrate | |
| 729 Successfully installed a2wsgi-1.7.0 adal-1.2.7 aiobotocore-2.4.2 aiodataloader-0.4.0 aiofiles-23.2.1 aiohttp-3.8.6 aioitertools-0.11.0 aiosignal-1.3.1 alembic-1.12.1 amqp-5.2.0 aniso8601-9.0.1 anyio-3.7.1 apispec-6.3.0 appdirs-1.4.4 arcp-0.2.1 argcomplete-3.1.2 async-timeout-4.0.3 asynctest-0.13.0 attmap-0.13.2 attrs-23.1.0 babel-2.13.1 backports-zoneinfo-0.2.1 bagit-1.8.1 bagit-profile-1.3.1 bcrypt-4.0.1 bdbag-1.7.1 beaker-1.12.1 billiard-3.6.4.0 bioblend-1.2.0 bleach-6.0.0 boltons-23.1.1 boto-2.49.0 botocore-1.27.59 bx-python-0.10.0 cachecontrol-0.13.1 cached-property-1.5.2 celery-5.2.7 certifi-2023.11.17 cffi-1.15.1 charset-normalizer-3.3.2 cheetah3-3.2.6.post1 circus-0.18.0 click-8.1.7 click-didyoumean-0.3.0 click-plugins-1.1.1 click-repl-0.3.0 cloudauthz-0.6.0 cloudbridge-3.2.0 coloredlogs-15.0.1 conda-package-streaming-0.9.0 cryptography-41.0.5 cwl-upgrader-1.2.8 cwl-utils-0.28 cwltool-3.1.20221109155812 decorator-5.1.1 defusedxml-0.7.1 deprecation-2.1.0 dictobj-0.4 dnspython-2.3.0 docopt-0.6.2 docutils-0.18.1 dparse-0.6.3 ecdsa-0.18.0 edam-ontology-1.25.2 email-validator-2.0.0.post2 exceptiongroup-1.2.0 fastapi-0.98.0 fastapi-utils-0.2.1 filelock-3.12.2 frozenlist-1.3.3 fs-2.4.16 fsspec-2023.1.0 future-0.18.3 galaxy-sequence-utils-1.1.5 galaxy2cwl-0.1.4 graphene-3.3 graphene-sqlalchemy-3.0.0b3 graphql-core-3.2.3 graphql-relay-3.2.0 gravity-1.0.4 greenlet-2.0.2 gunicorn-21.2.0 gxformat2-0.18.0 h11-0.14.0 h5grove-1.3.0 h5py-3.8.0 humanfriendly-10.0 idna-3.5 importlib-metadata-4.13.0 importlib-resources-5.12.0 isa-rwval-0.10.10 isal-1.3.0 isodate-0.6.1 jinja2-3.1.2 jmespath-1.0.1 jsonref-1.1.0 jsonschema-4.17.3 kombu-5.2.4 lagom-2.6.0 lxml-4.9.3 mako-1.2.4 markdown-3.4.4 markdown-it-py-2.2.0 markupsafe-2.1.3 mdurl-0.1.2 mercurial-6.6 mistune-2.0.5 mrcfile-1.4.3 msal-1.25.0 msgpack-1.0.5 multidict-6.0.4 mypy-extensions-1.0.0 networkx-2.5 nodeenv-1.8.0 numpy-1.21.6 oauthlib-3.2.2 orjson-3.9.7 oyaml-1.0 packaging-23.2 paramiko-3.3.1 parsley-1.3 paste-3.7.1 pastedeploy-3.1.0 pebble-5.0.4 pkgutil-resolve-name-1.3.10 promise-2.3 prompt-toolkit-3.0.41 prov-1.5.1 psutil-5.9.6 pulsar-galaxy-lib-0.15.5 pyasn1-0.5.1 pycparser-2.21 pycryptodome-3.19.0 pydantic-1.10.13 pydantic-tes-0.1.5 pydot-1.4.2 pyeventsystem-0.1.0 pyfaidx-0.7.2.2 pygments-2.17.2 pyjwt-2.8.0 pykwalify-1.8.0 pylibmagic-0.5.0 pynacl-1.5.0 pyparsing-3.0.9 pyrsistent-0.19.3 pysam-0.22.0 python-dateutil-2.8.2 python-jose-3.3.0 python-magic-0.4.27 python-multipart-0.0.7 python3-openid-3.2.0 pytz-2023.3.post1 pyyaml-6.0.1 pyzmq-25.1.1 rdflib-6.2.0 refgenconf-0.12.2 regex-2023.10.3 repoze-lru-0.7 requests-2.31.0 requests-oauthlib-1.3.1 requests-toolbelt-1.0.0 requests-unixsocket-0.3.0 rich-13.7.0 rocrate-0.9.0 routes-2.5.1 rsa-4.9 ruamel-yaml-0.17.21 ruamel-yaml-clib-0.2.8 s3fs-2023.1.0 schema-salad-8.4.20230808163024 setuptools-scm-5.0.2 shellescape-3.8.1 six-1.16.0 sniffio-1.3.0 social-auth-core-4.0.3 sortedcontainers-2.4.0 sqlalchemy-1.4.50 sqlitedict-2.1.0 sqlparse-0.4.4 starlette-0.27.0 starlette-context-0.3.5 starlette-graphene3-0.6.0 supervisor-4.2.5 svgwrite-1.4.3 tenacity-8.2.3 tifffile-2021.11.2 tinydb-4.8.0 tomli-2.0.1 tornado-6.2 tqdm-4.66.1 tuspy-1.0.1 tuswsgi-0.5.5 typing-extensions-4.7.1 tzlocal-5.1 ubiquerg-0.6.3 urllib3-1.26.18 uvicorn-0.22.0 uvloop-0.18.0 vine-5.1.0 wcwidth-0.2.12 webencodings-0.5.1 webob-1.8.7 whoosh-2.7.4 wrapt-1.16.0 yacman-0.9.2 yarl-1.9.3 zipp-3.15.0 zipstream-new-1.1.8 zstandard-0.21.0 | |
| 730 | |
| 731 [notice] A new release of pip is available: 23.3.2 -> 24.0 | |
| 732 [notice] To update, run: pip install --upgrade pip | |
| 733 | |
| 734 [notice] A new release of pip is available: 23.3.2 -> 24.0 | |
| 735 [notice] To update, run: pip install --upgrade pip | |
| 736 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple | |
| 737 Collecting watchdog (from -r /dev/stdin (line 1)) | |
| 738 Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl.metadata (36 kB) | |
| 739 Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl (82 kB) | |
| 740 Installing collected packages: watchdog | |
| 741 Successfully installed watchdog-3.0.0 | |
| 742 | |
| 743 [notice] A new release of pip is available: 23.3.2 -> 24.0 | |
| 744 [notice] To update, run: pip install --upgrade pip | |
| 745 Installing node into /scratch/rico/.planemo/gx_venv_3 with nodeenv. | |
| 746 * Install prebuilt node (18.12.1) ..... done. | |
| 747 * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate | |
| 748 * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate.fish | |
| 749 The Galaxy client build is up to date and will not be rebuilt at this time. | |
| 750 Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 | |
| 751 Adding service gunicorn | |
| 752 supervisord is not running | |
| 753 Adding service celery | |
| 754 supervisord is not running | |
| 755 Adding service celery-beat | |
| 756 supervisord is not running | |
| 757 Executing: galaxy | |
| 758 2024-02-23 14:21:29,531 WARN No file matches via include "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/*.conf" | |
| 759 2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery-beat_celery-beat.conf" during parsing | |
| 760 2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery_celery.conf" during parsing | |
| 761 2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_gunicorn_gunicorn.conf" during parsing | |
| 762 2024-02-23 14:21:29,535 INFO RPC interface 'supervisor' initialized | |
| 763 2024-02-23 14:21:29,536 CRIT Server 'unix_http_server' running without any HTTP authentication checking | |
| 764 2024-02-23 14:21:29,536 INFO supervisord started with pid 78500 | |
| 765 2024-02-23 14:21:29,833 INFO spawned: 'celery' with pid 78503 | |
| 766 2024-02-23 14:21:29,836 INFO spawned: 'celery-beat' with pid 78504 | |
| 767 2024-02-23 14:21:29,839 INFO spawned: 'gunicorn' with pid 78505 | |
| 768 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 769 | |
| 770 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 771 | |
| 772 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 773 Working directory: /scratch/rico/galaxy | |
| 774 Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery beat --loglevel DEBUG --schedule /tmp/tmpqrlh6ih1/gravity/celery-beat-schedule | |
| 775 | |
| 776 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 777 Working directory: /scratch/rico/galaxy | |
| 778 Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external | |
| 779 | |
| 780 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 781 Working directory: /scratch/rico/galaxy | |
| 782 Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml gunicorn 'galaxy.webapps.galaxy.fast_factory:factory()' --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b localhost:9090 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload | |
| 783 | |
| 784 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 785 Option master_api_key has been deprecated in favor of bootstrap_admin_api_key | |
| 786 No corresponding location name exists for location code: . | |
| 787 | |
| 788 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 789 Option master_api_key has been deprecated in favor of bootstrap_admin_api_key | |
| 790 No corresponding location name exists for location code: . | |
| 791 | |
| 792 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 793 Option master_api_key has been deprecated in favor of bootstrap_admin_api_key | |
| 794 No corresponding location name exists for location code: . | |
| 795 DEBUG:yacman.yacman:Patching yaml loader | |
| 796 DEBUG:yacman.yacman1:Using yacman version 0.9.2 | |
| 797 | |
| 798 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 799 [2024-02-23 14:21:33,665: DEBUG/MainProcess] | Worker: Preparing bootsteps. | |
| 800 [2024-02-23 14:21:33,667: DEBUG/MainProcess] | Worker: Building graph... | |
| 801 [2024-02-23 14:21:33,668: DEBUG/MainProcess] | Worker: New boot order: {Timer, Hub, Pool, Autoscaler, StateDB, Beat, Consumer} | |
| 802 [2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Preparing bootsteps. | |
| 803 [2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Building graph... | |
| 804 [2024-02-23 14:21:33,689: DEBUG/MainProcess] | Consumer: New boot order: {Connection, Events, Mingle, Gossip, Tasks, Control, Agent, Heart, event loop} | |
| 805 | |
| 806 -------------- celery@laila v5.2.7 (dawn-chorus) | |
| 807 --- ***** ----- | |
| 808 -- ******* ---- Linux-4.19.0-26-amd64-x86_64-with-debian-10.13 2024-02-23 14:21:33 | |
| 809 - *** --- * --- | |
| 810 - ** ---------- [config] | |
| 811 - ** ---------- .> app: galaxy:0x7f9f17483748 | |
| 812 - ** ---------- .> transport: sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite | |
| 813 - ** ---------- .> results: disabled:// | |
| 814 - *** --- * --- .> concurrency: 2 (thread) | |
| 815 -- ******* ---- .> task events: OFF (enable -E to monitor tasks in this worker) | |
| 816 --- ***** ----- | |
| 817 -------------- [queues] | |
| 818 .> celery exchange=celery(direct) key=celery | |
| 819 .> galaxy.external exchange=galaxy.external(direct) key=galaxy.external | |
| 820 .> galaxy.internal exchange=galaxy.internal(direct) key=galaxy.internal | |
| 821 | |
| 822 [tasks] | |
| 823 . celery.accumulate | |
| 824 . celery.backend_cleanup | |
| 825 . celery.chain | |
| 826 . celery.chord | |
| 827 . celery.chord_unlock | |
| 828 . celery.chunks | |
| 829 . celery.group | |
| 830 . celery.map | |
| 831 . celery.starmap | |
| 832 . galaxy.change_datatype | |
| 833 . galaxy.clean_object_store_caches | |
| 834 . galaxy.cleanup_expired_notifications | |
| 835 . galaxy.cleanup_short_term_storage | |
| 836 . galaxy.compute_dataset_hash | |
| 837 . galaxy.export_history | |
| 838 . galaxy.fetch_data | |
| 839 . galaxy.finish_job | |
| 840 . galaxy.import_data_bundle | |
| 841 . galaxy.import_model_store | |
| 842 . galaxy.materialize | |
| 843 . galaxy.prepare_dataset_collection_download | |
| 844 . galaxy.prepare_history_content_download | |
| 845 . galaxy.prepare_history_download | |
| 846 . galaxy.prepare_invocation_download | |
| 847 . galaxy.prepare_pdf_download | |
| 848 . galaxy.prune_history_audit_table | |
| 849 . galaxy.purge_datasets | |
| 850 . galaxy.purge_hda | |
| 851 . galaxy.recalculate_user_disk_usage | |
| 852 . galaxy.set_job_metadata | |
| 853 . galaxy.set_metadata | |
| 854 . galaxy.setup_fetch_data | |
| 855 . galaxy.touch | |
| 856 . galaxy.write_history_content_to | |
| 857 . galaxy.write_history_to | |
| 858 . galaxy.write_invocation_to | |
| 859 | |
| 860 [2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Pool | |
| 861 [2024-02-23 14:21:33,704: DEBUG/MainProcess] ^-- substep ok | |
| 862 [2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Consumer | |
| 863 [2024-02-23 14:21:33,704: DEBUG/MainProcess] | Consumer: Starting Connection | |
| 864 [2024-02-23 14:21:33,711: INFO/MainProcess] Connected to sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite | |
| 865 [2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok | |
| 866 [2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Events | |
| 867 [2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok | |
| 868 [2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Tasks | |
| 869 [2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok | |
| 870 [2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting Heart | |
| 871 [2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok | |
| 872 [2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting event loop | |
| 873 [2024-02-23 14:21:33,762: INFO/MainProcess] celery@laila ready. | |
| 874 | |
| 875 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 876 DEBUG:galaxy.app:python path is: /scratch/rico/galaxy, /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages | |
| 877 DEBUG:galaxy.config:Configuration directory is /tmp/tmpqrlh6ih1 | |
| 878 DEBUG:galaxy.config:Data directory is /scratch/rico/galaxy/database | |
| 879 DEBUG:galaxy.config:Managed config directory is /tmp/tmpqrlh6ih1 | |
| 880 WARNING:galaxy.config:Option master_api_key has been deprecated in favor of bootstrap_admin_api_key | |
| 881 DEBUG:galaxy.config:No extra version JSON file detected at /scratch/rico/galaxy/version.json | |
| 882 WARNING:galaxy.carbon_emissions:No corresponding location name exists for location code: . | |
| 883 INFO:galaxy.carbon_emissions:Using global default values for location name and carbon intensity... | |
| 884 | |
| 885 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 886 [2024-02-23 14:21:34,069: DEBUG/MainProcess] Setting default socket timeout to 30 | |
| 887 [2024-02-23 14:21:34,069: INFO/MainProcess] beat: Starting... | |
| 888 [2024-02-23 14:21:34,090: DEBUG/MainProcess] Current schedule: | |
| 889 <ScheduleEntry: cleanup-expired-notifications galaxy.cleanup_expired_notifications() <freq: 1.00 day> | |
| 890 <ScheduleEntry: cleanup-short-term-storage galaxy.cleanup_short_term_storage() <freq: 1.00 hour> | |
| 891 <ScheduleEntry: clean-object-store-caches galaxy.clean_object_store_caches() <freq: 10.00 minutes> | |
| 892 <ScheduleEntry: prune-history-audit-table galaxy.prune_history_audit_table() <freq: 1.00 hour> | |
| 893 <ScheduleEntry: celery.backend_cleanup celery.backend_cleanup() <crontab: 0 4 * * * (m/h/d/dM/MY)> | |
| 894 [2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Ticking with max interval->5.00 minutes | |
| 895 [2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 896 | |
| 897 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 898 INFO:alembic.runtime.migration:Context impl SQLiteImpl. | |
| 899 INFO:alembic.runtime.migration:Will assume non-transactional DDL. | |
| 900 INFO:alembic.runtime.migration:Running stamp_revision -> 8a19186a6ee7 | |
| 901 DEBUG:alembic.runtime.migration:new branch insert 8a19186a6ee7 | |
| 902 INFO:alembic.runtime.migration:Context impl SQLiteImpl. | |
| 903 INFO:alembic.runtime.migration:Will assume non-transactional DDL. | |
| 904 INFO:alembic.runtime.migration:Running stamp_revision -> d4a650f47a3c | |
| 905 DEBUG:alembic.runtime.migration:new branch insert d4a650f47a3c | |
| 906 INFO:galaxy.app:Install database targeting Galaxy's database configuration. | |
| 907 DEBUG:galaxy.web_stack:GunicornApplicationStack initialized | |
| 908 galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml | |
| 909 galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml | |
| 910 galaxy.web_stack.handlers INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default | |
| 911 galaxy.jobs INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Job handler assignment methods set to: db-skip-locked | |
| 912 galaxy.web_stack.handlers DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] default set to child with id or tag 'docker_local' | |
| 913 galaxy.jobs DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Done loading job configuration | |
| 914 galaxy.security.vault WARNING 2024-02-23 14:21:34,965 [pN:main,p:78505,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml | |
| 915 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,007 [pN:main,p:78505,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample | |
| 916 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. | |
| 917 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. | |
| 918 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. | |
| 919 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. | |
| 920 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. | |
| 921 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. | |
| 922 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. | |
| 923 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. | |
| 924 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. | |
| 925 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. | |
| 926 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. | |
| 927 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. | |
| 928 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. | |
| 929 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. | |
| 930 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. | |
| 931 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. | |
| 932 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. | |
| 933 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. | |
| 934 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. | |
| 935 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. | |
| 936 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. | |
| 937 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. | |
| 938 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. | |
| 939 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. | |
| 940 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. | |
| 941 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. | |
| 942 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. | |
| 943 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. | |
| 944 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. | |
| 945 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. | |
| 946 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. | |
| 947 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. | |
| 948 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. | |
| 949 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. | |
| 950 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. | |
| 951 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. | |
| 952 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. | |
| 953 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. | |
| 954 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. | |
| 955 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. | |
| 956 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. | |
| 957 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. | |
| 958 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. | |
| 959 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. | |
| 960 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. | |
| 961 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. | |
| 962 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. | |
| 963 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. | |
| 964 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. | |
| 965 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. | |
| 966 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. | |
| 967 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. | |
| 968 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. | |
| 969 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. | |
| 970 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. | |
| 971 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. | |
| 972 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. | |
| 973 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. | |
| 974 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. | |
| 975 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. | |
| 976 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. | |
| 977 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. | |
| 978 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. | |
| 979 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. | |
| 980 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. | |
| 981 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. | |
| 982 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. | |
| 983 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. | |
| 984 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. | |
| 985 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. | |
| 986 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. | |
| 987 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. | |
| 988 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. | |
| 989 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. | |
| 990 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. | |
| 991 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. | |
| 992 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. | |
| 993 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. | |
| 994 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. | |
| 995 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. | |
| 996 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. | |
| 997 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. | |
| 998 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. | |
| 999 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. | |
| 1000 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. | |
| 1001 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. | |
| 1002 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. | |
| 1003 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. | |
| 1004 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. | |
| 1005 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. | |
| 1006 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. | |
| 1007 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. | |
| 1008 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. | |
| 1009 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. | |
| 1010 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. | |
| 1011 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. | |
| 1012 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. | |
| 1013 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. | |
| 1014 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. | |
| 1015 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. | |
| 1016 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. | |
| 1017 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. | |
| 1018 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. | |
| 1019 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. | |
| 1020 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. | |
| 1021 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. | |
| 1022 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. | |
| 1023 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. | |
| 1024 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. | |
| 1025 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. | |
| 1026 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. | |
| 1027 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. | |
| 1028 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. | |
| 1029 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. | |
| 1030 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. | |
| 1031 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. | |
| 1032 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. | |
| 1033 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. | |
| 1034 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. | |
| 1035 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. | |
| 1036 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. | |
| 1037 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. | |
| 1038 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. | |
| 1039 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. | |
| 1040 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. | |
| 1041 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. | |
| 1042 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. | |
| 1043 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. | |
| 1044 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. | |
| 1045 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. | |
| 1046 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. | |
| 1047 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. | |
| 1048 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. | |
| 1049 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. | |
| 1050 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. | |
| 1051 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. | |
| 1052 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. | |
| 1053 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. | |
| 1054 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. | |
| 1055 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. | |
| 1056 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. | |
| 1057 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. | |
| 1058 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. | |
| 1059 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. | |
| 1060 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. | |
| 1061 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. | |
| 1062 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. | |
| 1063 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. | |
| 1064 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. | |
| 1065 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. | |
| 1066 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. | |
| 1067 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. | |
| 1068 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. | |
| 1069 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. | |
| 1070 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. | |
| 1071 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. | |
| 1072 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. | |
| 1073 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. | |
| 1074 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. | |
| 1075 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. | |
| 1076 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,109 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. | |
| 1077 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. | |
| 1078 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. | |
| 1079 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. | |
| 1080 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. | |
| 1081 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. | |
| 1082 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. | |
| 1083 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. | |
| 1084 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. | |
| 1085 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. | |
| 1086 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. | |
| 1087 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. | |
| 1088 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. | |
| 1089 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. | |
| 1090 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. | |
| 1091 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. | |
| 1092 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. | |
| 1093 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. | |
| 1094 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. | |
| 1095 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. | |
| 1096 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. | |
| 1097 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. | |
| 1098 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. | |
| 1099 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. | |
| 1100 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. | |
| 1101 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. | |
| 1102 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. | |
| 1103 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. | |
| 1104 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. | |
| 1105 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. | |
| 1106 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. | |
| 1107 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. | |
| 1108 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. | |
| 1109 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. | |
| 1110 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. | |
| 1111 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. | |
| 1112 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. | |
| 1113 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. | |
| 1114 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. | |
| 1115 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. | |
| 1116 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. | |
| 1117 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. | |
| 1118 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. | |
| 1119 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. | |
| 1120 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. | |
| 1121 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. | |
| 1122 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. | |
| 1123 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. | |
| 1124 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. | |
| 1125 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. | |
| 1126 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. | |
| 1127 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. | |
| 1128 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. | |
| 1129 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. | |
| 1130 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. | |
| 1131 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. | |
| 1132 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. | |
| 1133 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. | |
| 1134 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. | |
| 1135 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. | |
| 1136 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. | |
| 1137 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. | |
| 1138 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. | |
| 1139 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. | |
| 1140 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. | |
| 1141 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. | |
| 1142 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. | |
| 1143 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. | |
| 1144 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. | |
| 1145 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. | |
| 1146 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. | |
| 1147 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. | |
| 1148 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. | |
| 1149 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. | |
| 1150 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. | |
| 1151 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. | |
| 1152 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. | |
| 1153 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. | |
| 1154 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. | |
| 1155 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. | |
| 1156 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. | |
| 1157 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. | |
| 1158 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. | |
| 1159 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. | |
| 1160 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. | |
| 1161 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. | |
| 1162 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. | |
| 1163 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. | |
| 1164 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. | |
| 1165 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. | |
| 1166 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. | |
| 1167 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. | |
| 1168 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. | |
| 1169 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. | |
| 1170 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. | |
| 1171 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. | |
| 1172 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. | |
| 1173 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. | |
| 1174 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. | |
| 1175 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. | |
| 1176 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. | |
| 1177 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. | |
| 1178 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. | |
| 1179 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. | |
| 1180 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. | |
| 1181 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. | |
| 1182 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. | |
| 1183 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. | |
| 1184 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. | |
| 1185 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. | |
| 1186 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. | |
| 1187 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. | |
| 1188 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. | |
| 1189 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. | |
| 1190 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. | |
| 1191 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. | |
| 1192 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. | |
| 1193 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. | |
| 1194 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. | |
| 1195 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. | |
| 1196 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. | |
| 1197 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. | |
| 1198 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. | |
| 1199 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. | |
| 1200 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. | |
| 1201 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. | |
| 1202 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. | |
| 1203 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. | |
| 1204 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. | |
| 1205 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. | |
| 1206 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. | |
| 1207 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. | |
| 1208 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. | |
| 1209 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. | |
| 1210 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. | |
| 1211 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. | |
| 1212 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. | |
| 1213 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. | |
| 1214 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. | |
| 1215 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. | |
| 1216 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. | |
| 1217 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. | |
| 1218 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. | |
| 1219 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. | |
| 1220 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. | |
| 1221 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. | |
| 1222 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. | |
| 1223 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. | |
| 1224 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. | |
| 1225 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. | |
| 1226 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. | |
| 1227 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. | |
| 1228 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. | |
| 1229 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. | |
| 1230 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. | |
| 1231 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. | |
| 1232 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. | |
| 1233 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. | |
| 1234 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. | |
| 1235 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. | |
| 1236 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. | |
| 1237 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. | |
| 1238 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. | |
| 1239 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. | |
| 1240 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. | |
| 1241 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. | |
| 1242 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. | |
| 1243 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. | |
| 1244 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. | |
| 1245 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. | |
| 1246 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. | |
| 1247 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. | |
| 1248 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. | |
| 1249 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. | |
| 1250 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. | |
| 1251 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. | |
| 1252 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. | |
| 1253 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. | |
| 1254 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. | |
| 1255 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. | |
| 1256 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. | |
| 1257 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,130 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. | |
| 1258 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,132 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. | |
| 1259 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. | |
| 1260 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. | |
| 1261 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. | |
| 1262 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. | |
| 1263 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. | |
| 1264 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. | |
| 1265 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. | |
| 1266 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. | |
| 1267 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. | |
| 1268 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. | |
| 1269 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. | |
| 1270 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. | |
| 1271 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. | |
| 1272 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. | |
| 1273 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. | |
| 1274 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. | |
| 1275 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. | |
| 1276 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. | |
| 1277 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. | |
| 1278 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. | |
| 1279 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. | |
| 1280 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. | |
| 1281 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. | |
| 1282 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. | |
| 1283 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. | |
| 1284 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. | |
| 1285 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. | |
| 1286 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. | |
| 1287 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. | |
| 1288 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. | |
| 1289 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. | |
| 1290 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. | |
| 1291 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. | |
| 1292 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. | |
| 1293 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. | |
| 1294 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. | |
| 1295 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. | |
| 1296 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. | |
| 1297 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. | |
| 1298 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. | |
| 1299 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. | |
| 1300 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. | |
| 1301 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. | |
| 1302 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. | |
| 1303 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. | |
| 1304 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. | |
| 1305 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. | |
| 1306 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. | |
| 1307 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. | |
| 1308 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. | |
| 1309 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. | |
| 1310 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. | |
| 1311 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. | |
| 1312 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. | |
| 1313 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. | |
| 1314 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. | |
| 1315 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. | |
| 1316 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. | |
| 1317 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. | |
| 1318 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. | |
| 1319 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. | |
| 1320 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. | |
| 1321 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. | |
| 1322 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. | |
| 1323 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. | |
| 1324 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. | |
| 1325 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. | |
| 1326 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. | |
| 1327 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. | |
| 1328 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. | |
| 1329 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. | |
| 1330 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. | |
| 1331 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. | |
| 1332 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. | |
| 1333 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. | |
| 1334 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. | |
| 1335 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. | |
| 1336 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. | |
| 1337 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. | |
| 1338 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. | |
| 1339 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. | |
| 1340 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. | |
| 1341 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. | |
| 1342 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. | |
| 1343 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. | |
| 1344 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. | |
| 1345 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. | |
| 1346 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. | |
| 1347 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. | |
| 1348 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. | |
| 1349 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. | |
| 1350 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. | |
| 1351 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. | |
| 1352 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. | |
| 1353 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. | |
| 1354 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. | |
| 1355 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. | |
| 1356 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. | |
| 1357 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. | |
| 1358 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. | |
| 1359 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. | |
| 1360 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. | |
| 1361 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. | |
| 1362 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. | |
| 1363 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. | |
| 1364 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. | |
| 1365 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. | |
| 1366 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. | |
| 1367 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. | |
| 1368 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. | |
| 1369 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. | |
| 1370 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. | |
| 1371 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. | |
| 1372 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. | |
| 1373 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. | |
| 1374 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. | |
| 1375 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. | |
| 1376 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. | |
| 1377 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. | |
| 1378 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. | |
| 1379 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. | |
| 1380 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. | |
| 1381 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. | |
| 1382 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. | |
| 1383 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. | |
| 1384 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. | |
| 1385 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. | |
| 1386 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. | |
| 1387 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. | |
| 1388 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. | |
| 1389 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. | |
| 1390 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. | |
| 1391 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. | |
| 1392 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. | |
| 1393 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. | |
| 1394 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. | |
| 1395 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. | |
| 1396 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. | |
| 1397 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. | |
| 1398 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. | |
| 1399 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. | |
| 1400 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. | |
| 1401 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. | |
| 1402 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. | |
| 1403 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. | |
| 1404 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. | |
| 1405 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. | |
| 1406 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. | |
| 1407 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. | |
| 1408 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. | |
| 1409 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. | |
| 1410 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. | |
| 1411 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. | |
| 1412 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. | |
| 1413 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. | |
| 1414 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. | |
| 1415 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. | |
| 1416 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. | |
| 1417 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. | |
| 1418 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,152 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. | |
| 1419 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. | |
| 1420 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. | |
| 1421 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. | |
| 1422 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. | |
| 1423 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. | |
| 1424 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. | |
| 1425 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. | |
| 1426 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. | |
| 1427 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. | |
| 1428 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. | |
| 1429 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. | |
| 1430 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. | |
| 1431 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. | |
| 1432 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. | |
| 1433 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. | |
| 1434 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. | |
| 1435 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. | |
| 1436 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. | |
| 1437 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. | |
| 1438 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. | |
| 1439 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. | |
| 1440 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. | |
| 1441 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. | |
| 1442 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. | |
| 1443 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. | |
| 1444 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. | |
| 1445 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. | |
| 1446 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. | |
| 1447 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. | |
| 1448 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. | |
| 1449 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. | |
| 1450 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. | |
| 1451 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. | |
| 1452 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. | |
| 1453 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. | |
| 1454 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. | |
| 1455 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. | |
| 1456 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. | |
| 1457 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. | |
| 1458 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. | |
| 1459 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. | |
| 1460 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. | |
| 1461 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. | |
| 1462 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. | |
| 1463 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. | |
| 1464 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. | |
| 1465 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. | |
| 1466 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. | |
| 1467 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. | |
| 1468 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. | |
| 1469 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. | |
| 1470 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. | |
| 1471 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. | |
| 1472 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. | |
| 1473 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. | |
| 1474 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. | |
| 1475 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. | |
| 1476 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. | |
| 1477 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. | |
| 1478 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. | |
| 1479 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. | |
| 1480 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. | |
| 1481 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. | |
| 1482 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. | |
| 1483 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. | |
| 1484 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. | |
| 1485 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. | |
| 1486 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. | |
| 1487 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. | |
| 1488 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. | |
| 1489 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. | |
| 1490 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. | |
| 1491 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. | |
| 1492 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. | |
| 1493 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. | |
| 1494 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. | |
| 1495 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. | |
| 1496 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. | |
| 1497 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. | |
| 1498 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. | |
| 1499 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. | |
| 1500 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. | |
| 1501 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. | |
| 1502 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. | |
| 1503 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. | |
| 1504 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. | |
| 1505 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. | |
| 1506 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. | |
| 1507 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. | |
| 1508 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. | |
| 1509 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. | |
| 1510 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. | |
| 1511 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. | |
| 1512 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. | |
| 1513 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. | |
| 1514 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. | |
| 1515 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. | |
| 1516 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. | |
| 1517 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. | |
| 1518 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. | |
| 1519 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. | |
| 1520 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. | |
| 1521 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. | |
| 1522 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. | |
| 1523 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. | |
| 1524 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. | |
| 1525 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. | |
| 1526 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,167 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. | |
| 1527 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. | |
| 1528 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. | |
| 1529 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. | |
| 1530 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. | |
| 1531 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. | |
| 1532 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. | |
| 1533 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. | |
| 1534 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. | |
| 1535 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. | |
| 1536 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. | |
| 1537 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. | |
| 1538 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. | |
| 1539 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. | |
| 1540 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. | |
| 1541 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. | |
| 1542 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. | |
| 1543 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. | |
| 1544 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. | |
| 1545 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. | |
| 1546 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. | |
| 1547 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. | |
| 1548 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. | |
| 1549 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. | |
| 1550 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. | |
| 1551 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. | |
| 1552 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. | |
| 1553 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. | |
| 1554 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. | |
| 1555 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. | |
| 1556 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. | |
| 1557 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. | |
| 1558 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. | |
| 1559 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. | |
| 1560 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. | |
| 1561 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. | |
| 1562 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. | |
| 1563 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. | |
| 1564 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. | |
| 1565 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. | |
| 1566 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. | |
| 1567 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. | |
| 1568 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. | |
| 1569 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. | |
| 1570 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. | |
| 1571 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. | |
| 1572 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. | |
| 1573 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. | |
| 1574 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. | |
| 1575 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. | |
| 1576 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. | |
| 1577 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. | |
| 1578 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. | |
| 1579 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. | |
| 1580 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. | |
| 1581 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. | |
| 1582 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. | |
| 1583 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. | |
| 1584 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. | |
| 1585 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. | |
| 1586 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. | |
| 1587 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. | |
| 1588 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' | |
| 1589 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' | |
| 1590 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' | |
| 1591 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' | |
| 1592 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' | |
| 1593 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' | |
| 1594 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' | |
| 1595 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' | |
| 1596 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' | |
| 1597 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' | |
| 1598 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' | |
| 1599 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' | |
| 1600 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' | |
| 1601 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' | |
| 1602 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' | |
| 1603 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' | |
| 1604 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' | |
| 1605 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' | |
| 1606 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' | |
| 1607 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' | |
| 1608 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' | |
| 1609 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' | |
| 1610 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' | |
| 1611 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' | |
| 1612 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' | |
| 1613 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' | |
| 1614 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' | |
| 1615 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' | |
| 1616 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' | |
| 1617 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' | |
| 1618 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' | |
| 1619 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' | |
| 1620 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' | |
| 1621 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' | |
| 1622 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' | |
| 1623 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' | |
| 1624 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' | |
| 1625 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' | |
| 1626 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' | |
| 1627 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' | |
| 1628 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' | |
| 1629 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' | |
| 1630 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' | |
| 1631 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' | |
| 1632 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' | |
| 1633 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' | |
| 1634 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' | |
| 1635 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' | |
| 1636 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' | |
| 1637 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' | |
| 1638 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' | |
| 1639 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' | |
| 1640 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' | |
| 1641 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' | |
| 1642 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' | |
| 1643 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' | |
| 1644 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' | |
| 1645 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' | |
| 1646 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' | |
| 1647 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' | |
| 1648 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' | |
| 1649 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' | |
| 1650 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' | |
| 1651 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' | |
| 1652 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' | |
| 1653 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' | |
| 1654 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' | |
| 1655 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' | |
| 1656 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' | |
| 1657 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' | |
| 1658 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' | |
| 1659 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' | |
| 1660 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' | |
| 1661 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' | |
| 1662 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' | |
| 1663 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' | |
| 1664 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' | |
| 1665 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' | |
| 1666 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' | |
| 1667 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' | |
| 1668 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' | |
| 1669 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' | |
| 1670 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' | |
| 1671 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' | |
| 1672 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' | |
| 1673 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' | |
| 1674 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' | |
| 1675 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' | |
| 1676 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' | |
| 1677 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' | |
| 1678 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' | |
| 1679 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' | |
| 1680 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' | |
| 1681 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' | |
| 1682 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' | |
| 1683 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' | |
| 1684 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' | |
| 1685 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' | |
| 1686 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' | |
| 1687 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' | |
| 1688 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' | |
| 1689 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' | |
| 1690 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' | |
| 1691 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' | |
| 1692 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' | |
| 1693 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' | |
| 1694 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' | |
| 1695 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' | |
| 1696 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' | |
| 1697 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' | |
| 1698 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' | |
| 1699 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' | |
| 1700 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' | |
| 1701 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' | |
| 1702 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' | |
| 1703 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' | |
| 1704 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' | |
| 1705 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' | |
| 1706 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' | |
| 1707 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' | |
| 1708 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' | |
| 1709 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' | |
| 1710 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' | |
| 1711 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' | |
| 1712 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' | |
| 1713 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' | |
| 1714 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' | |
| 1715 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' | |
| 1716 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' | |
| 1717 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' | |
| 1718 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' | |
| 1719 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' | |
| 1720 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' | |
| 1721 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' | |
| 1722 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' | |
| 1723 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' | |
| 1724 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' | |
| 1725 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' | |
| 1726 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' | |
| 1727 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' | |
| 1728 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' | |
| 1729 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' | |
| 1730 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' | |
| 1731 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' | |
| 1732 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' | |
| 1733 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' | |
| 1734 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' | |
| 1735 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' | |
| 1736 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' | |
| 1737 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' | |
| 1738 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' | |
| 1739 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' | |
| 1740 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' | |
| 1741 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' | |
| 1742 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' | |
| 1743 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' | |
| 1744 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' | |
| 1745 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' | |
| 1746 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' | |
| 1747 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' | |
| 1748 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' | |
| 1749 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' | |
| 1750 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' | |
| 1751 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' | |
| 1752 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' | |
| 1753 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' | |
| 1754 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' | |
| 1755 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' | |
| 1756 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' | |
| 1757 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' | |
| 1758 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' | |
| 1759 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' | |
| 1760 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' | |
| 1761 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' | |
| 1762 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' | |
| 1763 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' | |
| 1764 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' | |
| 1765 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' | |
| 1766 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' | |
| 1767 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' | |
| 1768 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' | |
| 1769 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' | |
| 1770 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' | |
| 1771 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' | |
| 1772 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' | |
| 1773 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' | |
| 1774 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' | |
| 1775 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' | |
| 1776 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' | |
| 1777 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' | |
| 1778 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' | |
| 1779 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' | |
| 1780 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' | |
| 1781 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' | |
| 1782 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' | |
| 1783 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' | |
| 1784 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' | |
| 1785 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' | |
| 1786 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' | |
| 1787 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' | |
| 1788 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' | |
| 1789 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' | |
| 1790 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' | |
| 1791 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' | |
| 1792 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' | |
| 1793 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' | |
| 1794 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' | |
| 1795 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' | |
| 1796 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' | |
| 1797 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' | |
| 1798 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' | |
| 1799 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' | |
| 1800 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' | |
| 1801 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' | |
| 1802 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' | |
| 1803 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' | |
| 1804 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' | |
| 1805 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' | |
| 1806 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' | |
| 1807 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' | |
| 1808 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' | |
| 1809 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' | |
| 1810 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' | |
| 1811 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' | |
| 1812 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' | |
| 1813 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' | |
| 1814 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' | |
| 1815 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' | |
| 1816 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' | |
| 1817 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' | |
| 1818 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' | |
| 1819 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' | |
| 1820 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' | |
| 1821 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' | |
| 1822 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' | |
| 1823 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' | |
| 1824 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' | |
| 1825 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' | |
| 1826 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' | |
| 1827 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' | |
| 1828 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' | |
| 1829 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' | |
| 1830 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' | |
| 1831 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' | |
| 1832 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' | |
| 1833 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' | |
| 1834 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' | |
| 1835 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' | |
| 1836 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' | |
| 1837 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' | |
| 1838 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' | |
| 1839 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' | |
| 1840 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' | |
| 1841 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' | |
| 1842 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' | |
| 1843 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' | |
| 1844 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' | |
| 1845 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' | |
| 1846 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' | |
| 1847 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' | |
| 1848 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' | |
| 1849 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' | |
| 1850 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' | |
| 1851 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' | |
| 1852 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' | |
| 1853 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. | |
| 1854 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] | |
| 1855 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] | |
| 1856 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt | |
| 1857 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt | |
| 1858 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. | |
| 1859 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample | |
| 1860 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. | |
| 1861 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample | |
| 1862 galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml | |
| 1863 galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loaded reference to tool shed: Target Shed | |
| 1864 galaxy.queue_worker INFO 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE | |
| 1865 galaxy.visualization.genomes ERROR 2024-02-23 14:21:35,213 [pN:main,p:78505,tN:MainThread] Error reading twobit.loc | |
| 1866 Traceback (most recent call last): | |
| 1867 File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes | |
| 1868 with open(twobit_path) as f: | |
| 1869 FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' | |
| 1870 galaxy.util WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities | |
| 1871 galaxy.tools WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file | |
| 1872 galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml | |
| 1873 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,453 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None | |
| 1874 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,462 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. | |
| 1875 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. | |
| 1876 galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file | |
| 1877 galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml | |
| 1878 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools | |
| 1879 galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file | |
| 1880 galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml | |
| 1881 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None | |
| 1882 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Reading tools from config files finished (13.784 ms) | |
| 1883 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. | |
| 1884 galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.469 ms) | |
| 1885 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. | |
| 1886 galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.281 ms) | |
| 1887 galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml' | |
| 1888 galaxy.util ERROR 2024-02-23 14:21:35,925 [pN:main,p:78505,tN:MainThread] Error parsing file /tmp/tmpqrlh6ih1 | |
| 1889 Traceback (most recent call last): | |
| 1890 File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml | |
| 1891 tree = etree.parse(str(fname), parser=parser) | |
| 1892 File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse | |
| 1893 File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument | |
| 1894 File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL | |
| 1895 File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile | |
| 1896 File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile | |
| 1897 File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc | |
| 1898 File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult | |
| 1899 File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError | |
| 1900 File "/tmp/tmpqrlh6ih1", line 1 | |
| 1901 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 | |
| 1902 galaxy.tools.data_manager.manager ERROR 2024-02-23 14:21:35,926 [pN:main,p:78505,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpqrlh6ih1": Document is empty, line 1, column 1 (tmpqrlh6ih1, line 1) | |
| 1903 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,927 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. | |
| 1904 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,928 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. | |
| 1905 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,929 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". | |
| 1906 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. | |
| 1907 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. | |
| 1908 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". | |
| 1909 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. | |
| 1910 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. | |
| 1911 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. | |
| 1912 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. | |
| 1913 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. | |
| 1914 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. | |
| 1915 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. | |
| 1916 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. | |
| 1917 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". | |
| 1918 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. | |
| 1919 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". | |
| 1920 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. | |
| 1921 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,935 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. | |
| 1922 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". | |
| 1923 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. | |
| 1924 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. | |
| 1925 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,937 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. | |
| 1926 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,938 [pN:main,p:78505,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. | |
| 1927 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. | |
| 1928 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". | |
| 1929 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. | |
| 1930 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. | |
| 1931 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". | |
| 1932 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. | |
| 1933 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". | |
| 1934 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. | |
| 1935 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. | |
| 1936 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. | |
| 1937 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. | |
| 1938 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". | |
| 1939 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. | |
| 1940 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. | |
| 1941 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". | |
| 1942 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. | |
| 1943 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. | |
| 1944 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". | |
| 1945 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. | |
| 1946 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". | |
| 1947 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. | |
| 1948 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". | |
| 1949 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. | |
| 1950 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". | |
| 1951 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. | |
| 1952 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". | |
| 1953 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. | |
| 1954 galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". | |
| 1955 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. | |
| 1956 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. | |
| 1957 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' | |
| 1958 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' | |
| 1959 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' | |
| 1960 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' | |
| 1961 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' | |
| 1962 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' | |
| 1963 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' | |
| 1964 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' | |
| 1965 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' | |
| 1966 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' | |
| 1967 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' | |
| 1968 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' | |
| 1969 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' | |
| 1970 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' | |
| 1971 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' | |
| 1972 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' | |
| 1973 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' | |
| 1974 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' | |
| 1975 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' | |
| 1976 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' | |
| 1977 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' | |
| 1978 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' | |
| 1979 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' | |
| 1980 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' | |
| 1981 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' | |
| 1982 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' | |
| 1983 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' | |
| 1984 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' | |
| 1985 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' | |
| 1986 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' | |
| 1987 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' | |
| 1988 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' | |
| 1989 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' | |
| 1990 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' | |
| 1991 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' | |
| 1992 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' | |
| 1993 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' | |
| 1994 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' | |
| 1995 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' | |
| 1996 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' | |
| 1997 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' | |
| 1998 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' | |
| 1999 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' | |
| 2000 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' | |
| 2001 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' | |
| 2002 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' | |
| 2003 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' | |
| 2004 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' | |
| 2005 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' | |
| 2006 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' | |
| 2007 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' | |
| 2008 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' | |
| 2009 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' | |
| 2010 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' | |
| 2011 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' | |
| 2012 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' | |
| 2013 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' | |
| 2014 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' | |
| 2015 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,949 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' | |
| 2016 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,952 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2017 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,953 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2018 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,954 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2019 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,955 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2020 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,957 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2021 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,958 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2022 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,959 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 | |
| 2023 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,960 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 | |
| 2024 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,961 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam | |
| 2025 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,962 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 | |
| 2026 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,963 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam | |
| 2027 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,964 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam | |
| 2028 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,965 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 | |
| 2029 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,966 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 | |
| 2030 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,968 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2031 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,970 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2032 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,971 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2033 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,972 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 | |
| 2034 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,973 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig | |
| 2035 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,974 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount | |
| 2036 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,975 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv | |
| 2037 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,977 [pN:main,p:78505,tN:MainThread] Loaded converter: bigwigtowig | |
| 2038 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,980 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2039 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,982 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2040 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,983 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2041 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,984 [pN:main,p:78505,tN:MainThread] Loaded converter: csv_to_tabular | |
| 2042 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,985 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv | |
| 2043 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,986 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular | |
| 2044 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,987 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index | |
| 2045 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,988 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index | |
| 2046 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,989 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit | |
| 2047 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,990 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len | |
| 2048 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,991 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai | |
| 2049 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,992 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2050 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,993 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2051 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,994 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2052 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,996 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2053 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,997 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2054 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,998 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2055 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,999 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2056 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,000 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2057 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,001 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2058 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,002 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2059 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,003 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2060 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,005 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2061 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,006 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2062 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,007 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2063 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,008 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2064 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,010 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2065 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,011 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2066 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,012 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2067 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,013 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2068 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,015 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2069 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,016 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2070 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,017 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2071 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,018 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 | |
| 2072 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,019 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 | |
| 2073 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,020 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2074 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,021 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 | |
| 2075 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,023 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2076 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,025 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2077 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,026 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2078 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,027 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2079 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2080 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 | |
| 2081 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,030 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2082 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,031 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 | |
| 2083 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,032 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 | |
| 2084 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,033 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 | |
| 2085 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,034 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 | |
| 2086 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,037 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2087 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,039 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2088 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,040 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 | |
| 2089 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,041 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 | |
| 2090 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,042 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory | |
| 2091 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,043 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2092 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,044 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2093 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,046 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2094 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,047 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2095 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,048 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2096 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,049 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2097 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,050 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 | |
| 2098 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,051 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 | |
| 2099 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,053 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2100 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,056 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2101 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,057 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2102 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,059 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2103 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,061 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2104 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,062 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam | |
| 2105 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,063 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam | |
| 2106 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,064 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam | |
| 2107 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,065 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 | |
| 2108 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,066 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_dbnsfp | |
| 2109 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,067 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv | |
| 2110 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,069 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2111 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,070 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2112 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,072 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2113 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,073 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 | |
| 2114 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,075 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2115 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,076 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2116 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,078 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2117 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,079 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf | |
| 2118 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,080 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf | |
| 2119 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,081 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig | |
| 2120 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,082 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 | |
| 2121 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,084 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 | |
| 2122 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2123 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2fpedconvert | |
| 2124 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,086 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2pbedconvert | |
| 2125 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,087 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2lpedconvert | |
| 2126 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,088 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2ldindepconvert | |
| 2127 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,089 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2128 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,091 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2129 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,092 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom | |
| 2130 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,094 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom | |
| 2131 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,099 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2132 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,104 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2133 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,109 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2134 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,110 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL | |
| 2135 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,115 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2136 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,116 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles | |
| 2137 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,121 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2138 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,126 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2139 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,131 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2140 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,136 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2141 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,141 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2142 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,146 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2143 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,147 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol | |
| 2144 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,152 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2145 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,157 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2146 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,163 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2147 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,168 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2148 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,173 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2149 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,178 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2150 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,183 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2151 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,188 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2152 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,193 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2153 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,198 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2154 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,199 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol | |
| 2155 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,204 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2156 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,206 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles | |
| 2157 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,211 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2158 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,216 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2159 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,221 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules | |
| 2160 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,223 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 | |
| 2161 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,224 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert | |
| 2162 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,226 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert | |
| 2163 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,228 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert | |
| 2164 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,231 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert | |
| 2165 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,233 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert | |
| 2166 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,235 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert | |
| 2167 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,236 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 | |
| 2168 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,237 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony | |
| 2169 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,238 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore | |
| 2170 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,240 [pN:main,p:78505,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ | |
| 2171 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,241 [pN:main,p:78505,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ | |
| 2172 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,242 [pN:main,p:78505,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ | |
| 2173 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,243 [pN:main,p:78505,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ | |
| 2174 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,244 [pN:main,p:78505,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ | |
| 2175 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,245 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot | |
| 2176 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,246 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus | |
| 2177 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,247 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image | |
| 2178 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2179 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz | |
| 2180 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... | |
| 2181 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2182 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: csg | |
| 2183 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,250 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape | |
| 2184 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,251 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna | |
| 2185 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,252 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: editor | |
| 2186 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,253 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: example | |
| 2187 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,254 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2188 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,255 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer | |
| 2189 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2190 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz | |
| 2191 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web | |
| 2192 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,259 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster | |
| 2193 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default | |
| 2194 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2195 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace | |
| 2196 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2197 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision | |
| 2198 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,264 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar | |
| 2199 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,267 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box | |
| 2200 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,269 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram | |
| 2201 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,271 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line | |
| 2202 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter | |
| 2203 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2204 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player | |
| 2205 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2206 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player | |
| 2207 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: msa | |
| 2208 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,275 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2209 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,276 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp | |
| 2210 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,277 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl | |
| 2211 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,278 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nora | |
| 2212 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,280 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar | |
| 2213 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,282 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked | |
| 2214 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,284 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram | |
| 2215 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,286 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete | |
| 2216 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,288 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal | |
| 2217 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,290 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked | |
| 2218 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,292 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line | |
| 2219 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,294 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus | |
| 2220 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,296 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie | |
| 2221 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,298 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter | |
| 2222 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,300 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea | |
| 2223 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,302 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full | |
| 2224 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,304 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream | |
| 2225 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,305 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers | |
| 2226 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,306 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon | |
| 2227 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,307 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas | |
| 2228 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,308 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz | |
| 2229 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,309 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: pv | |
| 2230 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot | |
| 2231 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... | |
| 2232 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster | |
| 2233 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs | |
| 2234 galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead | |
| 2235 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept | |
| 2236 galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: venn | |
| 2237 galaxy.tours._impl INFO 2024-02-23 14:21:36,337 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.galaxy_ui' | |
| 2238 galaxy.tours._impl INFO 2024-02-23 14:21:36,354 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.deferred' | |
| 2239 galaxy.tours._impl INFO 2024-02-23 14:21:36,366 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.history' | |
| 2240 galaxy.tours._impl INFO 2024-02-23 14:21:36,377 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.windows' | |
| 2241 galaxy.workflow.scheduling_manager INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. | |
| 2242 galaxy.web_stack.handlers INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default | |
| 2243 galaxy.workflow.scheduling_manager DEBUG 2024-02-23 14:21:36,384 [pN:main,p:78505,tN:MainThread] Starting workflow schedulers | |
| 2244 galaxy.app INFO 2024-02-23 14:21:36,386 [pN:main,p:78505,tN:MainThread] Galaxy app startup finished (2552.949 ms) | |
| 2245 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,413 [pN:main,p:78505,tN:MainThread] Enabling 'user' controller, class: User | |
| 2246 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,414 [pN:main,p:78505,tN:MainThread] Enabling 'data_manager' controller, class: DataManager | |
| 2247 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'async' controller, class: ASync | |
| 2248 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'tag' controller, class: TagsController | |
| 2249 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,420 [pN:main,p:78505,tN:MainThread] Enabling 'page' controller, class: PageController | |
| 2250 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'root' controller, class: RootController | |
| 2251 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner | |
| 2252 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,422 [pN:main,p:78505,tN:MainThread] Enabling 'error' controller, class: Error | |
| 2253 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,423 [pN:main,p:78505,tN:MainThread] Enabling 'forms' controller, class: Forms | |
| 2254 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,437 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy | |
| 2255 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,438 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed | |
| 2256 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,439 [pN:main,p:78505,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController | |
| 2257 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic | |
| 2258 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher | |
| 2259 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,441 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: OIDC | |
| 2260 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,442 [pN:main,p:78505,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController | |
| 2261 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,444 [pN:main,p:78505,tN:MainThread] Enabling 'history' controller, class: HistoryController | |
| 2262 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface | |
| 2263 galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy | |
| 2264 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,175 [pN:main,p:78505,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController | |
| 2265 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,328 [pN:main,p:78505,tN:MainThread] Enabling 'jobs' API controller, class: JobController | |
| 2266 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,448 [pN:main,p:78505,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController | |
| 2267 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,495 [pN:main,p:78505,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController | |
| 2268 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,511 [pN:main,p:78505,tN:MainThread] Enabling 'tools' API controller, class: ToolsController | |
| 2269 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,632 [pN:main,p:78505,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController | |
| 2270 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController | |
| 2271 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController | |
| 2272 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController | |
| 2273 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController | |
| 2274 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,635 [pN:main,p:78505,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController | |
| 2275 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController | |
| 2276 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController | |
| 2277 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController | |
| 2278 galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,909 [pN:main,p:78505,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController | |
| 2279 galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,315 [pN:main,p:78505,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController | |
| 2280 galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,366 [pN:main,p:78505,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController | |
| 2281 galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,547 [pN:main,p:78505,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController | |
| 2282 galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController | |
| 2283 galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController | |
| 2284 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController | |
| 2285 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController | |
| 2286 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,228 [pN:main,p:78505,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController | |
| 2287 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,272 [pN:main,p:78505,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController | |
| 2288 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController | |
| 2289 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController | |
| 2290 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,345 [pN:main,p:78505,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController | |
| 2291 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'users' API controller, class: UserAPIController | |
| 2292 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController | |
| 2293 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,464 [pN:main,p:78505,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController | |
| 2294 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,538 [pN:main,p:78505,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController | |
| 2295 galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,573 [pN:main,p:78505,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController | |
| 2296 2024-02-23 14:21:39,857 INFO success: celery entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) | |
| 2297 galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'paste.httpexceptions' middleware | |
| 2298 2024-02-23 14:21:39,858 INFO success: celery-beat entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) | |
| 2299 galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RemoteUser' middleware | |
| 2300 galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'ErrorMiddleware' middleware | |
| 2301 galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'TusMiddleware' middleware | |
| 2302 galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware | |
| 2303 galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RequestIDMiddleware' middleware | |
| 2304 galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'build_url_map' middleware | |
| 2305 galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 14:21:39,858 [pN:main,p:78505,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139838623614784)> is alive. | |
| 2306 /scratch/rico/galaxy/lib/galaxy/webapps/openapi/utils.py:463: UserWarning: Merging operation with id fetch_json_api_tools_fetch_post with operation with id fetch_form_api_tools_fetch_post. | |
| 2307 warnings.warn(message) # noqa: B028 | |
| 2308 [2024-02-23 14:21:41 -0500] [78505] [INFO] Starting gunicorn 21.2.0 | |
| 2309 [2024-02-23 14:21:41 -0500] [78505] [INFO] Listening at: http://127.0.0.1:9090 (78505) | |
| 2310 [2024-02-23 14:21:41 -0500] [78505] [INFO] Using worker: galaxy.webapps.galaxy.workers.Worker | |
| 2311 [2024-02-23 14:21:41 -0500] [78709] [INFO] Booting worker with pid: 78709 | |
| 2312 galaxy.web_stack DEBUG 2024-02-23 14:21:41,492 [pN:main.1,p:78709,tN:Thread-2] server_name set to: main.1 | |
| 2313 galaxy.jobs.manager DEBUG 2024-02-23 14:21:41,493 [pN:main.1,p:78709,tN:Thread-2] Initializing job handler | |
| 2314 galaxy.jobs INFO 2024-02-23 14:21:41,494 [pN:main.1,p:78709,tN:Thread-2] Handler 'main.1' will load all configured runner plugins | |
| 2315 galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit | |
| 2316 galaxy.jobs DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' | |
| 2317 galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runners plugins: local | |
| 2318 galaxy.jobs.runners DEBUG 2024-02-23 14:21:41,510 [pN:main.1,p:78709,tN:Thread-2] Starting 4 LocalRunner workers | |
| 2319 galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,514 [pN:main.1,p:78709,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 | |
| 2320 galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): | |
| 2321 galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:Thread-2] job handler queue started | |
| 2322 galaxy.jobs.handler INFO 2024-02-23 14:21:41,553 [pN:main.1,p:78709,tN:Thread-2] job handler stop queue started | |
| 2323 galaxy.jobs.handler INFO 2024-02-23 14:21:41,556 [pN:main.1,p:78709,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ | |
| 2324 galaxy.queue_worker INFO 2024-02-23 14:21:41,575 [pN:main.1,p:78709,tN:Thread-2] Binding and starting galaxy control worker for main.1 | |
| 2325 galaxy.queue_worker DEBUG 2024-02-23 14:21:41,587 [pN:main.1,p:78709,tN:Thread-2] Executing toolbox reload on 'main.1' | |
| 2326 galaxy.util WARNING 2024-02-23 14:21:41,644 [pN:main.1,p:78709,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities | |
| 2327 [2024-02-23 14:21:41 -0500] [78709] [INFO] Started server process [78709] | |
| 2328 [2024-02-23 14:21:41 -0500] [78709] [INFO] Waiting for application startup. | |
| 2329 [2024-02-23 14:21:41 -0500] [78709] [INFO] Application startup complete. | |
| 2330 galaxy.tools WARNING 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file | |
| 2331 galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml | |
| 2332 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,669 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None | |
| 2333 galaxy.tools WARNING 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file | |
| 2334 galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml | |
| 2335 galaxy.model.database_heartbeat DEBUG 2024-02-23 14:21:41,678 [pN:main.1,p:78709,tN:database_heartbeart_main.1.thread] main.1 is config watcher | |
| 2336 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,679 [pN:main.1,p:78709,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools | |
| 2337 galaxy.tools WARNING 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file | |
| 2338 galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml | |
| 2339 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,683 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None | |
| 2340 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Reading tools from config files finished (15.967 ms) | |
| 2341 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. | |
| 2342 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loading tool panel finished (0.472 ms) | |
| 2343 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,689 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. | |
| 2344 galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,690 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (5.481 ms) | |
| 2345 galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. | |
| 2346 galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (1.670 ms) | |
| 2347 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2348 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2349 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2350 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2351 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2352 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2353 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 | |
| 2354 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 | |
| 2355 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam | |
| 2356 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 | |
| 2357 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam | |
| 2358 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam | |
| 2359 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 | |
| 2360 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 | |
| 2361 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2362 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2363 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2364 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 | |
| 2365 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig | |
| 2366 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount | |
| 2367 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv | |
| 2368 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: bigwigtowig | |
| 2369 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2370 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2371 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2372 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: csv_to_tabular | |
| 2373 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv | |
| 2374 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular | |
| 2375 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index | |
| 2376 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index | |
| 2377 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit | |
| 2378 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len | |
| 2379 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai | |
| 2380 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2381 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2382 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2383 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2384 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2385 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2386 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2387 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2388 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2389 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2390 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2391 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2392 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2393 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2394 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2395 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2396 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2397 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2398 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 | |
| 2399 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2400 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2401 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2402 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 | |
| 2403 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 | |
| 2404 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2405 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 | |
| 2406 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2407 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2408 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2409 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2410 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed | |
| 2411 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 | |
| 2412 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2413 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 | |
| 2414 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 | |
| 2415 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 | |
| 2416 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 | |
| 2417 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2418 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2419 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 | |
| 2420 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 | |
| 2421 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory | |
| 2422 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2423 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2424 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2425 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2426 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2427 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2428 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 | |
| 2429 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 | |
| 2430 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2431 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2432 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2433 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2434 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2435 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam | |
| 2436 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam | |
| 2437 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam | |
| 2438 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 | |
| 2439 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_dbnsfp | |
| 2440 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv | |
| 2441 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2442 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2443 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 | |
| 2444 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 | |
| 2445 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 | |
| 2446 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 | |
| 2447 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2448 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf | |
| 2449 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf | |
| 2450 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig | |
| 2451 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 | |
| 2452 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 | |
| 2453 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2454 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2fpedconvert | |
| 2455 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2pbedconvert | |
| 2456 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2lpedconvert | |
| 2457 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2ldindepconvert | |
| 2458 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz | |
| 2459 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed | |
| 2460 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom | |
| 2461 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom | |
| 2462 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2463 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2464 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2465 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL | |
| 2466 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2467 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles | |
| 2468 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2469 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2470 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2471 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2472 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2473 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2474 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol | |
| 2475 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2476 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2477 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2478 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2479 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2480 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2481 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2482 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2483 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2484 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2485 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol | |
| 2486 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2487 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles | |
| 2488 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2489 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2490 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules | |
| 2491 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 | |
| 2492 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert | |
| 2493 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert | |
| 2494 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert | |
| 2495 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert | |
| 2496 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert | |
| 2497 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert | |
| 2498 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 | |
| 2499 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony | |
| 2500 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore | |
| 2501 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,751 [pN:main.1,p:78709,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ | |
| 2502 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,753 [pN:main.1,p:78709,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ | |
| 2503 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,755 [pN:main.1,p:78709,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ | |
| 2504 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,757 [pN:main.1,p:78709,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ | |
| 2505 galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ | |
| 2506 galaxy.queue_worker INFO 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. | |
| 2507 galaxy.queue_worker DEBUG 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Toolbox reload (193.942 ms) | |
| 2508 galaxy.queue_worker INFO 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. | |
| 2509 galaxy.web_stack INFO 2024-02-23 14:21:41,792 [pN:main.1,p:78709,tN:Thread-2] Galaxy server instance 'main.1' is running | |
| 2510 [92m | |
| 2511 Serving on http://127.0.0.1:9090 | |
| 2512 [0m | |
| 2513 galaxy.queue_worker INFO 2024-02-23 14:21:42,781 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. | |
| 2514 galaxy.tools.search DEBUG 2024-02-23 14:21:42,782 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. | |
| 2515 galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (9.312 ms) | |
| 2516 galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. | |
| 2517 galaxy.tools.search DEBUG 2024-02-23 14:21:42,795 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.894 ms) | |
| 2518 galaxy.tools.search DEBUG 2024-02-23 14:21:42,796 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. | |
| 2519 galaxy.tools.search DEBUG 2024-02-23 14:21:42,799 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.529 ms) | |
| 2520 galaxy.queue_worker INFO 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. | |
| 2521 galaxy.tools.search DEBUG 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. | |
| 2522 galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (3.266 ms) | |
| 2523 galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. | |
| 2524 galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.321 ms) | |
| 2525 galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. | |
| 2526 galaxy.tools.search DEBUG 2024-02-23 14:21:42,818 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.186 ms) | |
| 2527 2024-02-23 14:21:45,822 INFO success: gunicorn entered RUNNING state, process has stayed up for > than 15 seconds (startsecs) | |
| 2528 | |
| 2529 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 2530 [2024-02-23 14:26:34,191: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 2531 [2024-02-23 14:26:34,192: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 2532 | |
| 2533 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 2534 galaxy.webapps.base.webapp DEBUG 2024-02-23 14:29:47,081 [pN:main.1,p:78709,tN:WSGI_0] Received invalid session key '{secure_id}', setting a new session key | |
| 2535 /scratch/rico/galaxy/lib/galaxy/managers/users.py:854: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. | |
| 2536 return session.scalars(stmt).first() | |
| 2537 /scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:349: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. | |
| 2538 if config.use_remote_user and self.galaxy_session.user.deleted: | |
| 2539 uvicorn.access INFO 2024-02-23 14:29:47,290 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET / HTTP/1.1" 200 | |
| 2540 uvicorn.access INFO 2024-02-23 14:29:47,318 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /static/dist/base.css?v=1707855697000 HTTP/1.1" 200 | |
| 2541 uvicorn.access INFO 2024-02-23 14:29:47,321 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /static/dist/analysis.bundled.js?v=1707855697000 HTTP/1.1" 200 | |
| 2542 uvicorn.access INFO 2024-02-23 14:29:47,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js?v=1707855697000 HTTP/1.1" 200 | |
| 2543 uvicorn.access INFO 2024-02-23 14:29:48,282 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/webhooks HTTP/1.1" 200 | |
| 2544 /scratch/rico/galaxy/lib/galaxy/managers/interactivetool.py:249: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly | |
| 2545 stmt = select(InteractiveToolEntryPoint).where(InteractiveToolEntryPoint.job_id.in_(build_subquery())) | |
| 2546 uvicorn.access INFO 2024-02-23 14:29:48,307 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2547 uvicorn.access INFO 2024-02-23 14:29:48,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/configuration HTTP/1.1" 200 | |
| 2548 uvicorn.access INFO 2024-02-23 14:29:48,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/users/current HTTP/1.1" 200 | |
| 2549 uvicorn.access INFO 2024-02-23 14:29:48,385 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/webhooks HTTP/1.1" 200 | |
| 2550 uvicorn.access INFO 2024-02-23 14:29:48,392 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /welcome HTTP/1.1" 302 | |
| 2551 uvicorn.access INFO 2024-02-23 14:29:48,412 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/tool_panels HTTP/1.1" 200 | |
| 2552 uvicorn.access INFO 2024-02-23 14:29:48,470 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /static/dist/base.css HTTP/1.1" 200 | |
| 2553 uvicorn.access INFO 2024-02-23 14:29:48,474 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /favicon.ico HTTP/1.1" 404 | |
| 2554 uvicorn.access INFO 2024-02-23 14:29:48,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/tools?in_panel=False HTTP/1.1" 200 | |
| 2555 uvicorn.access INFO 2024-02-23 14:29:48,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories/count HTTP/1.1" 200 | |
| 2556 /scratch/rico/galaxy/lib/galaxy/model/__init__.py:3318: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. | |
| 2557 return object_session(self).scalar(stmt) or 0 | |
| 2558 uvicorn.access INFO 2024-02-23 14:29:48,554 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /history/current_history_json HTTP/1.1" 200 | |
| 2559 uvicorn.access INFO 2024-02-23 14:29:48,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /history/current_history_json HTTP/1.1" 200 | |
| 2560 uvicorn.access INFO 2024-02-23 14:29:48,613 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/tool_panels/default HTTP/1.1" 200 | |
| 2561 /scratch/rico/galaxy/lib/galaxy/managers/history_contents.py:232: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. | |
| 2562 contents_results = self._union_of_contents_query(container, **kwargs).all() | |
| 2563 uvicorn.access INFO 2024-02-23 14:29:48,687 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories?view=summary&order=update_time&offset=0&limit=10 HTTP/1.1" 200 | |
| 2564 uvicorn.access INFO 2024-02-23 14:29:48,690 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:47.782Z HTTP/1.1" 200 | |
| 2565 uvicorn.access INFO 2024-02-23 14:29:48,740 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/datatypes?extension_only=false HTTP/1.1" 200 | |
| 2566 uvicorn.access INFO 2024-02-23 14:29:48,800 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js HTTP/1.1" 200 | |
| 2567 uvicorn.access INFO 2024-02-23 14:29:48,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /api/genomes HTTP/1.1" 200 | |
| 2568 uvicorn.access INFO 2024-02-23 14:29:48,872 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 2569 uvicorn.access INFO 2024-02-23 14:29:48,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 2570 uvicorn.access INFO 2024-02-23 14:29:48,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/count HTTP/1.1" 200 | |
| 2571 uvicorn.access INFO 2024-02-23 14:29:51,792 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51390 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2572 uvicorn.access INFO 2024-02-23 14:29:54,822 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2573 uvicorn.access INFO 2024-02-23 14:29:57,851 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2574 uvicorn.access INFO 2024-02-23 14:29:58,400 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2575 uvicorn.access INFO 2024-02-23 14:30:01,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50964 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2576 uvicorn.access INFO 2024-02-23 14:30:04,843 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50978 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2577 uvicorn.access INFO 2024-02-23 14:30:07,873 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2578 uvicorn.access INFO 2024-02-23 14:30:08,404 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2579 uvicorn.access INFO 2024-02-23 14:30:10,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36636 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2580 uvicorn.access INFO 2024-02-23 14:30:13,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36652 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2581 uvicorn.access INFO 2024-02-23 14:30:16,966 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2582 uvicorn.access INFO 2024-02-23 14:30:18,407 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2583 uvicorn.access INFO 2024-02-23 14:30:19,994 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2584 uvicorn.access INFO 2024-02-23 14:30:23,026 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58280 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2585 uvicorn.access INFO 2024-02-23 14:30:26,058 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35382 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2586 uvicorn.access INFO 2024-02-23 14:30:28,411 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2587 uvicorn.access INFO 2024-02-23 14:30:29,087 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2588 uvicorn.access INFO 2024-02-23 14:30:32,119 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35406 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2589 uvicorn.access INFO 2024-02-23 14:30:35,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35418 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2590 uvicorn.access INFO 2024-02-23 14:30:38,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2591 uvicorn.access INFO 2024-02-23 14:30:38,410 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2592 uvicorn.access INFO 2024-02-23 14:30:41,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50722 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2593 uvicorn.access INFO 2024-02-23 14:30:44,239 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50732 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2594 uvicorn.access INFO 2024-02-23 14:30:47,270 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2595 uvicorn.access INFO 2024-02-23 14:30:48,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2596 uvicorn.access INFO 2024-02-23 14:30:50,299 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2597 uvicorn.access INFO 2024-02-23 14:30:53,329 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46514 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2598 uvicorn.access INFO 2024-02-23 14:30:56,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2599 uvicorn.access INFO 2024-02-23 14:30:57,485 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/upload/resumable_upload/ HTTP/1.1" 201 | |
| 2600 uvicorn.access INFO 2024-02-23 14:30:57,537 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "PATCH /api/upload/resumable_upload/4d30abe413ab43b280d920f7dea4f47e HTTP/1.1" 204 | |
| 2601 galaxy.tools INFO 2024-02-23 14:30:57,574 [pN:main.1,p:78709,tN:MainThread] Validated and populated state for tool request (1.213 ms) | |
| 2602 galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,582 [pN:main.1,p:78709,tN:MainThread] Persisted uploads (0.058 ms) | |
| 2603 galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Created upload job (5.150 ms) | |
| 2604 galaxy.tools.execute DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Tool __DATA_FETCH__ created job None (73.168 ms) | |
| 2605 galaxy.web_stack.handlers INFO 2024-02-23 14:30:57,676 [pN:main.1,p:78709,tN:MainThread] (Job[id=1,tool_id=__DATA_FETCH__]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method | |
| 2606 galaxy.tools.execute DEBUG 2024-02-23 14:30:57,680 [pN:main.1,p:78709,tN:MainThread] Created 1 job(s) for tool __DATA_FETCH__ request (106.727 ms) | |
| 2607 uvicorn.access INFO 2024-02-23 14:30:57,694 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/tools/fetch HTTP/1.1" 200 | |
| 2608 uvicorn.access INFO 2024-02-23 14:30:58,416 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2609 galaxy.jobs.mapper DEBUG 2024-02-23 14:30:58,477 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local | |
| 2610 galaxy.jobs.handler DEBUG 2024-02-23 14:30:58,492 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner | |
| 2611 galaxy.jobs DEBUG 2024-02-23 14:30:58,503 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) | |
| 2612 galaxy.jobs DEBUG 2024-02-23 14:30:58,530 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/1 | |
| 2613 galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,541 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [1] queued (48.588 ms) | |
| 2614 galaxy.jobs.handler INFO 2024-02-23 14:30:58,552 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched | |
| 2615 galaxy.jobs DEBUG 2024-02-23 14:30:58,674 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [1] prepared (102.072 ms) | |
| 2616 galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] | |
| 2617 galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] | |
| 2618 galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] | |
| 2619 galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] | |
| 2620 galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] | |
| 2621 galaxy.jobs.command_factory INFO 2024-02-23 14:30:58,706 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/lib/galaxy/tools/data_fetch.py' --galaxy-root '/scratch/rico/galaxy' --datatypes-registry '/tmp/tmpqrlh6ih1/job_working_directory/000/1/registry.xml' --request-version '1' --request '/tmp/tmpqrlh6ih1/job_working_directory/000/1/configs/tmpnmy96xuh'] | |
| 2622 galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,757 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) command is: mkdir -p working outputs configs | |
| 2623 if [ -d _working ]; then | |
| 2624 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs | |
| 2625 else | |
| 2626 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs | |
| 2627 fi | |
| 2628 cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/1'; | |
| 2629 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" | |
| 2630 galaxy.jobs.runners.local DEBUG 2024-02-23 14:30:58,781 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh | |
| 2631 uvicorn.access INFO 2024-02-23 14:30:59,399 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 | |
| 2632 uvicorn.access INFO 2024-02-23 14:30:59,459 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:48.589Z HTTP/1.1" 200 | |
| 2633 uvicorn.access INFO 2024-02-23 14:30:59,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 2634 uvicorn.access INFO 2024-02-23 14:30:59,564 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 2635 uvicorn.access INFO 2024-02-23 14:31:02,523 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49346 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 | |
| 2636 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 78818 | |
| 2637 galaxy.jobs.runners.local DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh | |
| 2638 galaxy.jobs DEBUG 2024-02-23 14:31:05,098 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/1/outputs/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat to /tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat | |
| 2639 galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:31:05,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'fcsadaptor_prok_test.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/tmp/tmpqrlh6ih1/job_working_directory/000/1/working/gxupload_0', 'object_id': 1}]}]}] | |
| 2640 galaxy.jobs DEBUG 2024-02-23 14:31:05,242 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 1 executed (150.364 ms) | |
| 2641 uvicorn.access INFO 2024-02-23 14:31:05,558 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 | |
| 2642 uvicorn.access INFO 2024-02-23 14:31:05,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:30:59.408Z HTTP/1.1" 200 | |
| 2643 uvicorn.access INFO 2024-02-23 14:31:05,655 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 2644 uvicorn.access INFO 2024-02-23 14:31:05,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49370 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 2645 uvicorn.access INFO 2024-02-23 14:31:08,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2646 uvicorn.access INFO 2024-02-23 14:31:08,654 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2647 uvicorn.access INFO 2024-02-23 14:31:11,688 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54896 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2648 uvicorn.access INFO 2024-02-23 14:31:14,719 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54910 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2649 uvicorn.access INFO 2024-02-23 14:31:17,748 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2650 uvicorn.access INFO 2024-02-23 14:31:18,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2651 uvicorn.access INFO 2024-02-23 14:31:20,799 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34488 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2652 uvicorn.access INFO 2024-02-23 14:31:23,827 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34494 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2653 uvicorn.access INFO 2024-02-23 14:31:26,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2654 uvicorn.access INFO 2024-02-23 14:31:28,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 2655 uvicorn.access INFO 2024-02-23 14:31:29,887 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2656 uvicorn.access INFO 2024-02-23 14:31:32,919 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2657 | |
| 2658 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 2659 [2024-02-23 14:31:34,086: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 2660 [2024-02-23 14:31:34,099: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) | |
| 2661 [2024-02-23 14:31:34,141: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->0cd32a96-9d0e-4f4d-9772-212740dc8b8c | |
| 2662 [2024-02-23 14:31:34,142: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 2663 | |
| 2664 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 2665 [2024-02-23 14:31:35,137: INFO/MainProcess] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] received | |
| 2666 [2024-02-23 14:31:35,137: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '00442f4c-cdc1-41fb-b9c9-cf8c0d8ac151'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) | |
| 2667 [2024-02-23 14:31:35,529: DEBUG/MainProcess] python path is: /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages | |
| 2668 [2024-02-23 14:31:35,530: DEBUG/MainProcess] Configuration directory is /tmp/tmpqrlh6ih1 | |
| 2669 [2024-02-23 14:31:35,530: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database | |
| 2670 [2024-02-23 14:31:35,530: DEBUG/MainProcess] Managed config directory is /tmp/tmpqrlh6ih1 | |
| 2671 [2024-02-23 14:31:35,559: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key | |
| 2672 [2024-02-23 14:31:35,560: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json | |
| 2673 [2024-02-23 14:31:35,561: WARNING/MainProcess] No corresponding location name exists for location code: . | |
| 2674 [2024-02-23 14:31:35,561: INFO/MainProcess] Using global default values for location name and carbon intensity... | |
| 2675 [2024-02-23 14:31:35,563: INFO/MainProcess] Install database targeting Galaxy's database configuration. | |
| 2676 [2024-02-23 14:31:35,566: DEBUG/main] WeblessApplicationStack initialized | |
| 2677 [2024-02-23 14:31:35,570: DEBUG/main] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml | |
| 2678 [2024-02-23 14:31:35,570: DEBUG/main] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml | |
| 2679 [2024-02-23 14:31:35,580: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default | |
| 2680 [2024-02-23 14:31:35,580: INFO/main] Job handler assignment methods set to: db-skip-locked | |
| 2681 [2024-02-23 14:31:35,581: DEBUG/main] default set to child with id or tag 'docker_local' | |
| 2682 [2024-02-23 14:31:35,581: DEBUG/main] Done loading job configuration | |
| 2683 [2024-02-23 14:31:35,770: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml | |
| 2684 | |
| 2685 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 2686 uvicorn.access INFO 2024-02-23 14:31:35,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59038 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 2687 | |
| 2688 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 2689 [2024-02-23 14:31:36,006: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample | |
| 2690 [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. | |
| 2691 [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. | |
| 2692 [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. | |
| 2693 [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. | |
| 2694 [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. | |
| 2695 [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. | |
| 2696 [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. | |
| 2697 [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. | |
| 2698 [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. | |
| 2699 [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. | |
| 2700 [2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. | |
| 2701 [2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. | |
| 2702 [2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. | |
| 2703 [2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. | |
| 2704 [2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. | |
| 2705 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. | |
| 2706 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. | |
| 2707 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. | |
| 2708 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. | |
| 2709 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. | |
| 2710 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. | |
| 2711 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. | |
| 2712 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. | |
| 2713 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. | |
| 2714 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. | |
| 2715 [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. | |
| 2716 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. | |
| 2717 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. | |
| 2718 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. | |
| 2719 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. | |
| 2720 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. | |
| 2721 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. | |
| 2722 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. | |
| 2723 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. | |
| 2724 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. | |
| 2725 [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. | |
| 2726 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. | |
| 2727 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. | |
| 2728 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. | |
| 2729 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. | |
| 2730 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. | |
| 2731 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. | |
| 2732 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. | |
| 2733 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. | |
| 2734 [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. | |
| 2735 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. | |
| 2736 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. | |
| 2737 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. | |
| 2738 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. | |
| 2739 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. | |
| 2740 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. | |
| 2741 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. | |
| 2742 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. | |
| 2743 [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. | |
| 2744 [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. | |
| 2745 [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. | |
| 2746 [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. | |
| 2747 [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. | |
| 2748 [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. | |
| 2749 [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. | |
| 2750 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. | |
| 2751 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. | |
| 2752 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. | |
| 2753 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. | |
| 2754 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. | |
| 2755 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. | |
| 2756 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. | |
| 2757 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. | |
| 2758 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. | |
| 2759 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. | |
| 2760 [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. | |
| 2761 [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. | |
| 2762 [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. | |
| 2763 [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. | |
| 2764 [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. | |
| 2765 [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. | |
| 2766 [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. | |
| 2767 [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. | |
| 2768 [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. | |
| 2769 [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. | |
| 2770 [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. | |
| 2771 [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. | |
| 2772 [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. | |
| 2773 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. | |
| 2774 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. | |
| 2775 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. | |
| 2776 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. | |
| 2777 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. | |
| 2778 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. | |
| 2779 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. | |
| 2780 [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. | |
| 2781 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. | |
| 2782 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. | |
| 2783 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. | |
| 2784 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. | |
| 2785 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. | |
| 2786 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. | |
| 2787 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. | |
| 2788 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. | |
| 2789 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. | |
| 2790 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. | |
| 2791 [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. | |
| 2792 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. | |
| 2793 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. | |
| 2794 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. | |
| 2795 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. | |
| 2796 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. | |
| 2797 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. | |
| 2798 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. | |
| 2799 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. | |
| 2800 [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. | |
| 2801 [2024-02-23 14:31:36,104: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. | |
| 2802 [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. | |
| 2803 [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. | |
| 2804 [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. | |
| 2805 [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. | |
| 2806 [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. | |
| 2807 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. | |
| 2808 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. | |
| 2809 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. | |
| 2810 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. | |
| 2811 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. | |
| 2812 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. | |
| 2813 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. | |
| 2814 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. | |
| 2815 [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. | |
| 2816 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. | |
| 2817 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. | |
| 2818 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. | |
| 2819 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. | |
| 2820 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. | |
| 2821 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. | |
| 2822 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. | |
| 2823 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. | |
| 2824 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. | |
| 2825 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. | |
| 2826 [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. | |
| 2827 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. | |
| 2828 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. | |
| 2829 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. | |
| 2830 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. | |
| 2831 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. | |
| 2832 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. | |
| 2833 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. | |
| 2834 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. | |
| 2835 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. | |
| 2836 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. | |
| 2837 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. | |
| 2838 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. | |
| 2839 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. | |
| 2840 [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. | |
| 2841 [2024-02-23 14:31:36,109: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. | |
| 2842 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. | |
| 2843 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. | |
| 2844 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. | |
| 2845 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. | |
| 2846 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. | |
| 2847 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. | |
| 2848 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. | |
| 2849 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. | |
| 2850 [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. | |
| 2851 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. | |
| 2852 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. | |
| 2853 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. | |
| 2854 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. | |
| 2855 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. | |
| 2856 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. | |
| 2857 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. | |
| 2858 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. | |
| 2859 [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. | |
| 2860 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. | |
| 2861 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. | |
| 2862 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. | |
| 2863 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. | |
| 2864 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. | |
| 2865 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. | |
| 2866 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. | |
| 2867 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. | |
| 2868 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. | |
| 2869 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. | |
| 2870 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. | |
| 2871 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. | |
| 2872 [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. | |
| 2873 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. | |
| 2874 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. | |
| 2875 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. | |
| 2876 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. | |
| 2877 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. | |
| 2878 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. | |
| 2879 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. | |
| 2880 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. | |
| 2881 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. | |
| 2882 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. | |
| 2883 [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. | |
| 2884 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. | |
| 2885 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. | |
| 2886 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. | |
| 2887 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. | |
| 2888 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. | |
| 2889 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. | |
| 2890 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. | |
| 2891 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. | |
| 2892 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. | |
| 2893 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. | |
| 2894 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. | |
| 2895 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. | |
| 2896 [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. | |
| 2897 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. | |
| 2898 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. | |
| 2899 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. | |
| 2900 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. | |
| 2901 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. | |
| 2902 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. | |
| 2903 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. | |
| 2904 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. | |
| 2905 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. | |
| 2906 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. | |
| 2907 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. | |
| 2908 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. | |
| 2909 [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. | |
| 2910 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. | |
| 2911 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. | |
| 2912 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. | |
| 2913 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. | |
| 2914 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. | |
| 2915 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. | |
| 2916 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. | |
| 2917 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. | |
| 2918 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. | |
| 2919 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. | |
| 2920 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. | |
| 2921 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. | |
| 2922 [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. | |
| 2923 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. | |
| 2924 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. | |
| 2925 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. | |
| 2926 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. | |
| 2927 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. | |
| 2928 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. | |
| 2929 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. | |
| 2930 [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. | |
| 2931 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. | |
| 2932 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. | |
| 2933 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. | |
| 2934 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. | |
| 2935 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. | |
| 2936 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. | |
| 2937 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. | |
| 2938 [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. | |
| 2939 [2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. | |
| 2940 [2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. | |
| 2941 [2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. | |
| 2942 [2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. | |
| 2943 [2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. | |
| 2944 [2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. | |
| 2945 [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. | |
| 2946 [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. | |
| 2947 [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. | |
| 2948 [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. | |
| 2949 [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. | |
| 2950 [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. | |
| 2951 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. | |
| 2952 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. | |
| 2953 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. | |
| 2954 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. | |
| 2955 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. | |
| 2956 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. | |
| 2957 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. | |
| 2958 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. | |
| 2959 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. | |
| 2960 [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. | |
| 2961 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. | |
| 2962 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. | |
| 2963 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. | |
| 2964 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. | |
| 2965 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. | |
| 2966 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. | |
| 2967 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. | |
| 2968 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. | |
| 2969 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. | |
| 2970 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. | |
| 2971 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. | |
| 2972 [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. | |
| 2973 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. | |
| 2974 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. | |
| 2975 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. | |
| 2976 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. | |
| 2977 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. | |
| 2978 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. | |
| 2979 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. | |
| 2980 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. | |
| 2981 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. | |
| 2982 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. | |
| 2983 [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. | |
| 2984 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. | |
| 2985 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. | |
| 2986 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. | |
| 2987 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. | |
| 2988 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. | |
| 2989 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. | |
| 2990 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. | |
| 2991 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. | |
| 2992 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. | |
| 2993 [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. | |
| 2994 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. | |
| 2995 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. | |
| 2996 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. | |
| 2997 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. | |
| 2998 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. | |
| 2999 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. | |
| 3000 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. | |
| 3001 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. | |
| 3002 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. | |
| 3003 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. | |
| 3004 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. | |
| 3005 [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. | |
| 3006 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. | |
| 3007 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. | |
| 3008 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. | |
| 3009 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. | |
| 3010 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. | |
| 3011 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. | |
| 3012 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. | |
| 3013 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. | |
| 3014 [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. | |
| 3015 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. | |
| 3016 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. | |
| 3017 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. | |
| 3018 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. | |
| 3019 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. | |
| 3020 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. | |
| 3021 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. | |
| 3022 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. | |
| 3023 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. | |
| 3024 [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. | |
| 3025 [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. | |
| 3026 [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. | |
| 3027 [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. | |
| 3028 [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. | |
| 3029 [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. | |
| 3030 [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. | |
| 3031 [2024-02-23 14:31:36,133: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. | |
| 3032 [2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. | |
| 3033 [2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. | |
| 3034 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. | |
| 3035 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. | |
| 3036 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. | |
| 3037 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. | |
| 3038 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. | |
| 3039 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. | |
| 3040 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. | |
| 3041 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. | |
| 3042 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. | |
| 3043 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. | |
| 3044 [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. | |
| 3045 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. | |
| 3046 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. | |
| 3047 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. | |
| 3048 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. | |
| 3049 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. | |
| 3050 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. | |
| 3051 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. | |
| 3052 [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. | |
| 3053 [2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. | |
| 3054 [2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. | |
| 3055 [2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. | |
| 3056 [2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. | |
| 3057 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. | |
| 3058 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. | |
| 3059 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. | |
| 3060 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. | |
| 3061 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. | |
| 3062 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. | |
| 3063 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. | |
| 3064 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. | |
| 3065 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. | |
| 3066 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. | |
| 3067 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. | |
| 3068 [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. | |
| 3069 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. | |
| 3070 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. | |
| 3071 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. | |
| 3072 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. | |
| 3073 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. | |
| 3074 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. | |
| 3075 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. | |
| 3076 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. | |
| 3077 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. | |
| 3078 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. | |
| 3079 [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. | |
| 3080 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. | |
| 3081 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. | |
| 3082 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. | |
| 3083 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. | |
| 3084 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. | |
| 3085 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. | |
| 3086 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. | |
| 3087 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. | |
| 3088 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. | |
| 3089 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. | |
| 3090 [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. | |
| 3091 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. | |
| 3092 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. | |
| 3093 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. | |
| 3094 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. | |
| 3095 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. | |
| 3096 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. | |
| 3097 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. | |
| 3098 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. | |
| 3099 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. | |
| 3100 [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. | |
| 3101 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. | |
| 3102 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. | |
| 3103 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. | |
| 3104 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. | |
| 3105 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. | |
| 3106 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. | |
| 3107 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. | |
| 3108 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. | |
| 3109 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. | |
| 3110 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. | |
| 3111 [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. | |
| 3112 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. | |
| 3113 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. | |
| 3114 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. | |
| 3115 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. | |
| 3116 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. | |
| 3117 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. | |
| 3118 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. | |
| 3119 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. | |
| 3120 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. | |
| 3121 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. | |
| 3122 [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. | |
| 3123 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. | |
| 3124 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. | |
| 3125 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. | |
| 3126 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. | |
| 3127 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. | |
| 3128 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. | |
| 3129 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. | |
| 3130 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. | |
| 3131 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. | |
| 3132 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. | |
| 3133 [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. | |
| 3134 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. | |
| 3135 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. | |
| 3136 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. | |
| 3137 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. | |
| 3138 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. | |
| 3139 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. | |
| 3140 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. | |
| 3141 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. | |
| 3142 [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. | |
| 3143 [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. | |
| 3144 [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. | |
| 3145 [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. | |
| 3146 [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. | |
| 3147 [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. | |
| 3148 [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. | |
| 3149 [2024-02-23 14:31:36,149: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. | |
| 3150 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. | |
| 3151 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. | |
| 3152 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. | |
| 3153 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. | |
| 3154 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. | |
| 3155 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. | |
| 3156 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. | |
| 3157 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. | |
| 3158 [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. | |
| 3159 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. | |
| 3160 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. | |
| 3161 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. | |
| 3162 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. | |
| 3163 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. | |
| 3164 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. | |
| 3165 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. | |
| 3166 [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. | |
| 3167 [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. | |
| 3168 [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. | |
| 3169 [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. | |
| 3170 [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. | |
| 3171 [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. | |
| 3172 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. | |
| 3173 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. | |
| 3174 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. | |
| 3175 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. | |
| 3176 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. | |
| 3177 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. | |
| 3178 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. | |
| 3179 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. | |
| 3180 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. | |
| 3181 [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. | |
| 3182 [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. | |
| 3183 [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. | |
| 3184 [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. | |
| 3185 [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. | |
| 3186 [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. | |
| 3187 [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. | |
| 3188 [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. | |
| 3189 [2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. | |
| 3190 [2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. | |
| 3191 [2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. | |
| 3192 [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. | |
| 3193 [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. | |
| 3194 [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. | |
| 3195 [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. | |
| 3196 [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. | |
| 3197 [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. | |
| 3198 [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. | |
| 3199 [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. | |
| 3200 [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. | |
| 3201 [2024-02-23 14:31:36,164: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. | |
| 3202 [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. | |
| 3203 [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. | |
| 3204 [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. | |
| 3205 [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. | |
| 3206 [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. | |
| 3207 [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. | |
| 3208 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. | |
| 3209 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. | |
| 3210 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. | |
| 3211 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. | |
| 3212 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. | |
| 3213 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. | |
| 3214 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. | |
| 3215 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. | |
| 3216 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. | |
| 3217 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. | |
| 3218 [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. | |
| 3219 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. | |
| 3220 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. | |
| 3221 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. | |
| 3222 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. | |
| 3223 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. | |
| 3224 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. | |
| 3225 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. | |
| 3226 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. | |
| 3227 [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. | |
| 3228 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. | |
| 3229 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. | |
| 3230 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. | |
| 3231 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. | |
| 3232 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. | |
| 3233 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. | |
| 3234 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. | |
| 3235 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. | |
| 3236 [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. | |
| 3237 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. | |
| 3238 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. | |
| 3239 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. | |
| 3240 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. | |
| 3241 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. | |
| 3242 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. | |
| 3243 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. | |
| 3244 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. | |
| 3245 [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. | |
| 3246 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. | |
| 3247 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. | |
| 3248 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. | |
| 3249 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. | |
| 3250 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. | |
| 3251 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. | |
| 3252 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. | |
| 3253 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. | |
| 3254 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. | |
| 3255 [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. | |
| 3256 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. | |
| 3257 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. | |
| 3258 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. | |
| 3259 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. | |
| 3260 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. | |
| 3261 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. | |
| 3262 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. | |
| 3263 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. | |
| 3264 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. | |
| 3265 [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. | |
| 3266 [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. | |
| 3267 [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. | |
| 3268 [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. | |
| 3269 [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. | |
| 3270 [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. | |
| 3271 [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. | |
| 3272 [2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. | |
| 3273 [2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. | |
| 3274 [2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. | |
| 3275 [2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. | |
| 3276 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. | |
| 3277 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. | |
| 3278 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. | |
| 3279 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. | |
| 3280 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. | |
| 3281 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. | |
| 3282 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. | |
| 3283 [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. | |
| 3284 [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. | |
| 3285 [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. | |
| 3286 [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. | |
| 3287 [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. | |
| 3288 [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. | |
| 3289 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. | |
| 3290 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. | |
| 3291 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. | |
| 3292 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. | |
| 3293 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. | |
| 3294 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. | |
| 3295 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. | |
| 3296 [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. | |
| 3297 [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. | |
| 3298 [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. | |
| 3299 [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. | |
| 3300 [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. | |
| 3301 [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. | |
| 3302 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. | |
| 3303 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. | |
| 3304 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. | |
| 3305 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. | |
| 3306 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. | |
| 3307 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. | |
| 3308 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. | |
| 3309 [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. | |
| 3310 [2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. | |
| 3311 [2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. | |
| 3312 [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. | |
| 3313 [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. | |
| 3314 [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. | |
| 3315 [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. | |
| 3316 [2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. | |
| 3317 [2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. | |
| 3318 [2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. | |
| 3319 [2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. | |
| 3320 [2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. | |
| 3321 [2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. | |
| 3322 [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. | |
| 3323 [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. | |
| 3324 [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. | |
| 3325 [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. | |
| 3326 [2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. | |
| 3327 [2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. | |
| 3328 [2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. | |
| 3329 [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. | |
| 3330 [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. | |
| 3331 [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. | |
| 3332 [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. | |
| 3333 [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. | |
| 3334 [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. | |
| 3335 [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. | |
| 3336 [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. | |
| 3337 [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. | |
| 3338 [2024-02-23 14:31:36,200: DEBUG/main] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. | |
| 3339 [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. | |
| 3340 [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. | |
| 3341 [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. | |
| 3342 [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. | |
| 3343 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. | |
| 3344 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. | |
| 3345 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. | |
| 3346 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. | |
| 3347 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. | |
| 3348 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. | |
| 3349 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. | |
| 3350 [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. | |
| 3351 [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. | |
| 3352 [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. | |
| 3353 [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. | |
| 3354 [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. | |
| 3355 [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. | |
| 3356 [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. | |
| 3357 [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. | |
| 3358 [2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. | |
| 3359 [2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. | |
| 3360 [2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. | |
| 3361 [2024-02-23 14:31:36,205: DEBUG/main] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. | |
| 3362 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' | |
| 3363 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' | |
| 3364 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' | |
| 3365 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' | |
| 3366 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' | |
| 3367 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' | |
| 3368 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' | |
| 3369 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' | |
| 3370 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' | |
| 3371 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' | |
| 3372 [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' | |
| 3373 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' | |
| 3374 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' | |
| 3375 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' | |
| 3376 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' | |
| 3377 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' | |
| 3378 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' | |
| 3379 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' | |
| 3380 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' | |
| 3381 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' | |
| 3382 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' | |
| 3383 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' | |
| 3384 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' | |
| 3385 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' | |
| 3386 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' | |
| 3387 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' | |
| 3388 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' | |
| 3389 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' | |
| 3390 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' | |
| 3391 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' | |
| 3392 [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' | |
| 3393 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' | |
| 3394 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' | |
| 3395 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' | |
| 3396 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' | |
| 3397 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' | |
| 3398 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' | |
| 3399 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' | |
| 3400 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' | |
| 3401 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' | |
| 3402 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' | |
| 3403 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' | |
| 3404 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' | |
| 3405 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' | |
| 3406 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' | |
| 3407 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' | |
| 3408 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' | |
| 3409 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' | |
| 3410 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' | |
| 3411 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' | |
| 3412 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' | |
| 3413 [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' | |
| 3414 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' | |
| 3415 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' | |
| 3416 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' | |
| 3417 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' | |
| 3418 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' | |
| 3419 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' | |
| 3420 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' | |
| 3421 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' | |
| 3422 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' | |
| 3423 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' | |
| 3424 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' | |
| 3425 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' | |
| 3426 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' | |
| 3427 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' | |
| 3428 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' | |
| 3429 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' | |
| 3430 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' | |
| 3431 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' | |
| 3432 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' | |
| 3433 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' | |
| 3434 [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' | |
| 3435 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' | |
| 3436 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' | |
| 3437 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' | |
| 3438 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' | |
| 3439 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' | |
| 3440 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' | |
| 3441 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' | |
| 3442 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' | |
| 3443 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' | |
| 3444 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' | |
| 3445 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' | |
| 3446 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' | |
| 3447 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' | |
| 3448 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' | |
| 3449 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' | |
| 3450 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' | |
| 3451 [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' | |
| 3452 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' | |
| 3453 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' | |
| 3454 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' | |
| 3455 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' | |
| 3456 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' | |
| 3457 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' | |
| 3458 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' | |
| 3459 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' | |
| 3460 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' | |
| 3461 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' | |
| 3462 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' | |
| 3463 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' | |
| 3464 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' | |
| 3465 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' | |
| 3466 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' | |
| 3467 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' | |
| 3468 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' | |
| 3469 [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' | |
| 3470 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' | |
| 3471 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' | |
| 3472 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' | |
| 3473 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' | |
| 3474 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' | |
| 3475 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' | |
| 3476 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' | |
| 3477 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' | |
| 3478 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' | |
| 3479 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' | |
| 3480 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' | |
| 3481 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' | |
| 3482 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' | |
| 3483 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' | |
| 3484 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' | |
| 3485 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' | |
| 3486 [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' | |
| 3487 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' | |
| 3488 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' | |
| 3489 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' | |
| 3490 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' | |
| 3491 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' | |
| 3492 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' | |
| 3493 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' | |
| 3494 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' | |
| 3495 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' | |
| 3496 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' | |
| 3497 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' | |
| 3498 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' | |
| 3499 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' | |
| 3500 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' | |
| 3501 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' | |
| 3502 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' | |
| 3503 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' | |
| 3504 [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' | |
| 3505 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' | |
| 3506 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' | |
| 3507 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' | |
| 3508 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' | |
| 3509 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' | |
| 3510 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' | |
| 3511 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' | |
| 3512 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' | |
| 3513 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' | |
| 3514 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' | |
| 3515 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' | |
| 3516 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' | |
| 3517 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' | |
| 3518 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' | |
| 3519 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' | |
| 3520 [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' | |
| 3521 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' | |
| 3522 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' | |
| 3523 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' | |
| 3524 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' | |
| 3525 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' | |
| 3526 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' | |
| 3527 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' | |
| 3528 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' | |
| 3529 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' | |
| 3530 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' | |
| 3531 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' | |
| 3532 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' | |
| 3533 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' | |
| 3534 [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' | |
| 3535 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' | |
| 3536 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' | |
| 3537 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' | |
| 3538 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' | |
| 3539 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' | |
| 3540 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' | |
| 3541 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' | |
| 3542 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' | |
| 3543 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' | |
| 3544 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' | |
| 3545 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' | |
| 3546 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' | |
| 3547 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' | |
| 3548 [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' | |
| 3549 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' | |
| 3550 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' | |
| 3551 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' | |
| 3552 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' | |
| 3553 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' | |
| 3554 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' | |
| 3555 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' | |
| 3556 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' | |
| 3557 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' | |
| 3558 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' | |
| 3559 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' | |
| 3560 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' | |
| 3561 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' | |
| 3562 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' | |
| 3563 [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' | |
| 3564 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' | |
| 3565 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' | |
| 3566 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' | |
| 3567 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' | |
| 3568 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' | |
| 3569 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' | |
| 3570 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' | |
| 3571 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' | |
| 3572 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' | |
| 3573 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' | |
| 3574 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' | |
| 3575 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' | |
| 3576 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' | |
| 3577 [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' | |
| 3578 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' | |
| 3579 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' | |
| 3580 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' | |
| 3581 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' | |
| 3582 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' | |
| 3583 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' | |
| 3584 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' | |
| 3585 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' | |
| 3586 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' | |
| 3587 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' | |
| 3588 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' | |
| 3589 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' | |
| 3590 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' | |
| 3591 [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' | |
| 3592 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' | |
| 3593 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' | |
| 3594 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' | |
| 3595 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' | |
| 3596 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' | |
| 3597 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' | |
| 3598 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' | |
| 3599 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' | |
| 3600 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' | |
| 3601 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' | |
| 3602 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' | |
| 3603 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' | |
| 3604 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' | |
| 3605 [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' | |
| 3606 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' | |
| 3607 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' | |
| 3608 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' | |
| 3609 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' | |
| 3610 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' | |
| 3611 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' | |
| 3612 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' | |
| 3613 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' | |
| 3614 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' | |
| 3615 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' | |
| 3616 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' | |
| 3617 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' | |
| 3618 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' | |
| 3619 [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' | |
| 3620 [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' | |
| 3621 [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' | |
| 3622 [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' | |
| 3623 [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' | |
| 3624 [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' | |
| 3625 [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' | |
| 3626 [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' | |
| 3627 [2024-02-23 14:31:36,228: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. | |
| 3628 [2024-02-23 14:31:36,228: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] | |
| 3629 [2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] | |
| 3630 [2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt | |
| 3631 [2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt | |
| 3632 [2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. | |
| 3633 [2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample | |
| 3634 [2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. | |
| 3635 [2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample | |
| 3636 [2024-02-23 14:31:36,235: DEBUG/main] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml | |
| 3637 [2024-02-23 14:31:36,235: DEBUG/main] Loaded reference to tool shed: Target Shed | |
| 3638 [2024-02-23 14:31:36,236: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.416 ms) | |
| 3639 [2024-02-23 14:31:36,258: INFO/main] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] succeeded in 1.1198743890272453s: None | |
| 3640 | |
| 3641 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 3642 uvicorn.access INFO 2024-02-23 14:31:39,245 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3643 uvicorn.access INFO 2024-02-23 14:31:39,246 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59042 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3644 uvicorn.access INFO 2024-02-23 14:31:41,884 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59064 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3645 uvicorn.access INFO 2024-02-23 14:31:44,914 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59080 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3646 uvicorn.access INFO 2024-02-23 14:31:47,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3647 uvicorn.access INFO 2024-02-23 14:31:49,232 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3648 uvicorn.access INFO 2024-02-23 14:31:50,978 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3649 uvicorn.access INFO 2024-02-23 14:31:54,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58364 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3650 uvicorn.access INFO 2024-02-23 14:31:57,035 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33278 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3651 uvicorn.access INFO 2024-02-23 14:31:59,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3652 uvicorn.access INFO 2024-02-23 14:32:00,061 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3653 uvicorn.access INFO 2024-02-23 14:32:03,091 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3654 uvicorn.access INFO 2024-02-23 14:32:06,121 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3655 uvicorn.access INFO 2024-02-23 14:32:09,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3656 uvicorn.access INFO 2024-02-23 14:32:09,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3657 uvicorn.access INFO 2024-02-23 14:32:12,215 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51200 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3658 uvicorn.access INFO 2024-02-23 14:32:15,244 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51208 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3659 uvicorn.access INFO 2024-02-23 14:32:18,272 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3660 uvicorn.access INFO 2024-02-23 14:32:19,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3661 uvicorn.access INFO 2024-02-23 14:32:21,303 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49304 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3662 uvicorn.access INFO 2024-02-23 14:32:24,334 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49306 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3663 uvicorn.access INFO 2024-02-23 14:32:27,364 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3664 uvicorn.access INFO 2024-02-23 14:32:29,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3665 uvicorn.access INFO 2024-02-23 14:32:30,394 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3666 uvicorn.access INFO 2024-02-23 14:32:34,227 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52530 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3667 uvicorn.access INFO 2024-02-23 14:32:40,226 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55960 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3668 uvicorn.access INFO 2024-02-23 14:32:50,229 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47220 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3669 uvicorn.access INFO 2024-02-23 14:33:01,227 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38834 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3670 uvicorn.access INFO 2024-02-23 14:33:11,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54950 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3671 uvicorn.access INFO 2024-02-23 14:33:22,228 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51772 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3672 uvicorn.access INFO 2024-02-23 14:33:35,225 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39714 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3673 uvicorn.access INFO 2024-02-23 14:34:03,233 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32804 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3674 uvicorn.access INFO 2024-02-23 14:34:36,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43248 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3675 uvicorn.access INFO 2024-02-23 14:35:03,231 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49414 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3676 uvicorn.access INFO 2024-02-23 14:35:37,224 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54092 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3677 uvicorn.access INFO 2024-02-23 14:35:47,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33818 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3678 uvicorn.access INFO 2024-02-23 14:35:47,547 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33804 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3679 uvicorn.access INFO 2024-02-23 14:35:50,579 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33828 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3680 uvicorn.access INFO 2024-02-23 14:35:53,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33832 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3681 uvicorn.access INFO 2024-02-23 14:35:56,638 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48808 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3682 uvicorn.access INFO 2024-02-23 14:35:57,528 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48808 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3683 uvicorn.access INFO 2024-02-23 14:35:59,667 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48810 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3684 uvicorn.access INFO 2024-02-23 14:36:02,692 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48822 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3685 uvicorn.access INFO 2024-02-23 14:36:05,722 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3686 uvicorn.access INFO 2024-02-23 14:36:07,532 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3687 uvicorn.access INFO 2024-02-23 14:36:08,754 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3688 uvicorn.access INFO 2024-02-23 14:36:11,784 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40210 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3689 uvicorn.access INFO 2024-02-23 14:36:14,812 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40220 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3690 uvicorn.access INFO 2024-02-23 14:36:17,532 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46790 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3691 uvicorn.access INFO 2024-02-23 14:36:17,840 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46790 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3692 uvicorn.access INFO 2024-02-23 14:36:20,868 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46792 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3693 uvicorn.access INFO 2024-02-23 14:36:23,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46796 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3694 uvicorn.access INFO 2024-02-23 14:36:26,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3695 uvicorn.access INFO 2024-02-23 14:36:27,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3696 uvicorn.access INFO 2024-02-23 14:36:29,958 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44196 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3697 uvicorn.access INFO 2024-02-23 14:36:32,986 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44202 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3698 | |
| 3699 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 3700 [2024-02-23 14:36:34,242: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 3701 [2024-02-23 14:36:34,243: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 3702 | |
| 3703 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 3704 uvicorn.access INFO 2024-02-23 14:36:36,013 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3705 uvicorn.access INFO 2024-02-23 14:36:37,534 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3706 uvicorn.access INFO 2024-02-23 14:36:39,042 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3707 uvicorn.access INFO 2024-02-23 14:36:42,077 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3708 uvicorn.access INFO 2024-02-23 14:36:45,106 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47188 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3709 uvicorn.access INFO 2024-02-23 14:36:47,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3710 uvicorn.access INFO 2024-02-23 14:36:48,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3711 uvicorn.access INFO 2024-02-23 14:36:51,166 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51236 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3712 uvicorn.access INFO 2024-02-23 14:36:54,194 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51252 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3713 uvicorn.access INFO 2024-02-23 14:36:57,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3714 uvicorn.access INFO 2024-02-23 14:36:57,539 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3715 uvicorn.access INFO 2024-02-23 14:37:00,252 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59056 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3716 uvicorn.access INFO 2024-02-23 14:37:03,283 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3717 uvicorn.access INFO 2024-02-23 14:37:06,312 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3718 uvicorn.access INFO 2024-02-23 14:37:07,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3719 uvicorn.access INFO 2024-02-23 14:37:09,340 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3720 uvicorn.access INFO 2024-02-23 14:37:12,369 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40452 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3721 uvicorn.access INFO 2024-02-23 14:37:15,399 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40466 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3722 uvicorn.access INFO 2024-02-23 14:37:17,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33438 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3723 uvicorn.access INFO 2024-02-23 14:37:18,427 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33438 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3724 uvicorn.access INFO 2024-02-23 14:37:21,460 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33454 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3725 uvicorn.access INFO 2024-02-23 14:37:24,489 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33460 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3726 uvicorn.access INFO 2024-02-23 14:37:27,518 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35406 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3727 uvicorn.access INFO 2024-02-23 14:37:27,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35420 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3728 uvicorn.access INFO 2024-02-23 14:37:30,550 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35436 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3729 uvicorn.access INFO 2024-02-23 14:37:33,583 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3730 uvicorn.access INFO 2024-02-23 14:37:36,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48378 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3731 uvicorn.access INFO 2024-02-23 14:37:37,543 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48378 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3732 uvicorn.access INFO 2024-02-23 14:37:39,651 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48384 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3733 uvicorn.access INFO 2024-02-23 14:37:42,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48392 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3734 uvicorn.access INFO 2024-02-23 14:37:45,764 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3735 uvicorn.access INFO 2024-02-23 14:37:47,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3736 uvicorn.access INFO 2024-02-23 14:37:48,830 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3737 uvicorn.access INFO 2024-02-23 14:37:51,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42334 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3738 uvicorn.access INFO 2024-02-23 14:37:54,890 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42350 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3739 uvicorn.access INFO 2024-02-23 14:37:57,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3740 uvicorn.access INFO 2024-02-23 14:37:57,918 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3741 uvicorn.access INFO 2024-02-23 14:38:01,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58972 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3742 uvicorn.access INFO 2024-02-23 14:38:05,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58982 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3743 uvicorn.access INFO 2024-02-23 14:38:07,464 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 | |
| 3744 uvicorn.access INFO 2024-02-23 14:38:07,569 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 | |
| 3745 uvicorn.access INFO 2024-02-23 14:38:07,598 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3746 uvicorn.access INFO 2024-02-23 14:38:08,342 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3747 uvicorn.access INFO 2024-02-23 14:38:11,372 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3748 uvicorn.access INFO 2024-02-23 14:38:14,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38326 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3749 uvicorn.access INFO 2024-02-23 14:38:17,430 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3750 uvicorn.access INFO 2024-02-23 14:38:17,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3751 galaxy.tools INFO 2024-02-23 14:38:19,507 [pN:main.1,p:78709,tN:WSGI_7] Validated and populated state for tool request (4.275 ms) | |
| 3752 galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (1.515 ms) | |
| 3753 galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (0.330 ms) | |
| 3754 galaxy.tools.actions INFO 2024-02-23 14:38:19,525 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.727 ms) | |
| 3755 galaxy.tools.actions INFO 2024-02-23 14:38:19,553 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for job Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (27.383 ms) | |
| 3756 galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (8.918 ms) | |
| 3757 galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=2,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method | |
| 3758 galaxy.tools.actions INFO 2024-02-23 14:38:19,600 [pN:main.1,p:78709,tN:WSGI_7] Handled output named adaptor_report for tool ncbi_fcs_adaptor (4.755 ms) | |
| 3759 galaxy.tools.actions INFO 2024-02-23 14:38:19,603 [pN:main.1,p:78709,tN:WSGI_7] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.600 ms) | |
| 3760 galaxy.tools.actions INFO 2024-02-23 14:38:19,611 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (7.890 ms) | |
| 3761 galaxy.tools.actions INFO 2024-02-23 14:38:19,612 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.323 ms) | |
| 3762 galaxy.tools.execute DEBUG 2024-02-23 14:38:19,613 [pN:main.1,p:78709,tN:WSGI_7] Tool ncbi_fcs_adaptor created job None (102.802 ms) | |
| 3763 galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,632 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=3,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method | |
| 3764 galaxy.tools.execute DEBUG 2024-02-23 14:38:19,636 [pN:main.1,p:78709,tN:WSGI_7] Created 1 job(s) for tool ncbi_fcs_adaptor request (128.259 ms) | |
| 3765 uvicorn.access INFO 2024-02-23 14:38:19,648 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "POST /api/tools HTTP/1.1" 200 | |
| 3766 uvicorn.access INFO 2024-02-23 14:38:19,678 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 | |
| 3767 uvicorn.access INFO 2024-02-23 14:38:19,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:31:05.566Z HTTP/1.1" 200 | |
| 3768 galaxy.jobs.mapper DEBUG 2024-02-23 14:38:19,766 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local | |
| 3769 galaxy.jobs.handler DEBUG 2024-02-23 14:38:19,773 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner | |
| 3770 galaxy.jobs DEBUG 2024-02-23 14:38:19,800 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) | |
| 3771 uvicorn.access INFO 2024-02-23 14:38:19,828 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3772 uvicorn.access INFO 2024-02-23 14:38:19,856 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40112 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 3773 galaxy.jobs DEBUG 2024-02-23 14:38:19,858 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/2 | |
| 3774 galaxy.jobs.runners DEBUG 2024-02-23 14:38:19,870 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [2] queued (96.880 ms) | |
| 3775 galaxy.jobs.handler INFO 2024-02-23 14:38:19,884 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched | |
| 3776 galaxy.jobs DEBUG 2024-02-23 14:38:19,938 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [2] prepared (47.790 ms) | |
| 3777 galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] | |
| 3778 galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets | |
| 3779 galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] | |
| 3780 galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets | |
| 3781 galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] | |
| 3782 galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets | |
| 3783 galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] | |
| 3784 galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets | |
| 3785 galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] | |
| 3786 galaxy.jobs.command_factory INFO 2024-02-23 14:38:19,971 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh] for tool command [cp '/tmp/tmpqrlh6ih1/job_working_directory/000/2/configs/tmputamy64b' 'galaxy.json' && gzip -dcf '/tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat' > '/tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] | |
| 3787 galaxy.jobs.runners DEBUG 2024-02-23 14:38:20,010 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) command is: mkdir -p working outputs configs | |
| 3788 if [ -d _working ]; then | |
| 3789 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs | |
| 3790 else | |
| 3791 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs | |
| 3792 fi | |
| 3793 cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/2'; | |
| 3794 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" | |
| 3795 galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:20,036 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh | |
| 3796 uvicorn.access INFO 2024-02-23 14:38:22,837 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /history/current_history_json?since=2024-02-23T19:38:19.000622 HTTP/1.1" 200 | |
| 3797 uvicorn.access INFO 2024-02-23 14:38:22,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:19.686Z HTTP/1.1" 200 | |
| 3798 uvicorn.access INFO 2024-02-23 14:38:22,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3799 uvicorn.access INFO 2024-02-23 14:38:22,946 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40118 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 3800 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:38:23,760 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 79031 | |
| 3801 galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:23,761 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh | |
| 3802 galaxy.jobs DEBUG 2024-02-23 14:38:23,783 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat to /tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat | |
| 3803 galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:38:23,790 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'output1': {'name': 'fcsadaptor_prok_test.fa uncompressed', 'ext': 'fasta'}}] | |
| 3804 galaxy.model.metadata DEBUG 2024-02-23 14:38:23,795 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 2 | |
| 3805 galaxy.jobs DEBUG 2024-02-23 14:38:23,823 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 2 executed (45.391 ms) | |
| 3806 galaxy.jobs.mapper DEBUG 2024-02-23 14:38:23,983 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local | |
| 3807 galaxy.jobs.handler DEBUG 2024-02-23 14:38:23,986 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner | |
| 3808 galaxy.jobs DEBUG 2024-02-23 14:38:23,991 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) | |
| 3809 galaxy.jobs DEBUG 2024-02-23 14:38:23,996 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/3 | |
| 3810 galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,002 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.947 ms) | |
| 3811 galaxy.jobs.handler INFO 2024-02-23 14:38:24,010 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched | |
| 3812 galaxy.security.object_wrapper WARNING 2024-02-23 14:38:24,049 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() | |
| 3813 galaxy.jobs DEBUG 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (43.024 ms) | |
| 3814 galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] | |
| 3815 galaxy.jobs.command_factory INFO 2024-02-23 14:38:24,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] | |
| 3816 galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,149 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs | |
| 3817 if [ -d _working ]; then | |
| 3818 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs | |
| 3819 else | |
| 3820 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs | |
| 3821 fi | |
| 3822 cd working; | |
| 3823 _on_exit() { | |
| 3824 docker kill ddbfcc5b6a8b487cbddefc4091d43dcb &> /dev/null | |
| 3825 } | |
| 3826 trap _on_exit EXIT | |
| 3827 docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 | |
| 3828 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 | |
| 3829 | |
| 3830 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name ddbfcc5b6a8b487cbddefc4091d43dcb -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3:/tmp/tmpqrlh6ih1/job_working_directory/000/3:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/working:/tmp/tmpqrlh6ih1/job_working_directory/000/3/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/3/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.ec; | |
| 3831 if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat" ; fi; | |
| 3832 if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/3'; | |
| 3833 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" | |
| 3834 galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:24,173 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh | |
| 3835 uvicorn.access INFO 2024-02-23 14:38:25,943 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /history/current_history_json?since=2024-02-23T19:38:20.000081 HTTP/1.1" 200 | |
| 3836 uvicorn.access INFO 2024-02-23 14:38:26,002 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:22.844Z HTTP/1.1" 200 | |
| 3837 uvicorn.access INFO 2024-02-23 14:38:26,102 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3838 uvicorn.access INFO 2024-02-23 14:38:26,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 3839 uvicorn.access INFO 2024-02-23 14:38:27,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3840 uvicorn.access INFO 2024-02-23 14:38:29,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33922 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 | |
| 3841 uvicorn.access INFO 2024-02-23 14:38:29,128 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 | |
| 3842 uvicorn.access INFO 2024-02-23 14:38:30,842 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/jobs/b35bb5a57277f2b7/build_for_rerun HTTP/1.1" 200 | |
| 3843 uvicorn.access INFO 2024-02-23 14:38:30,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 | |
| 3844 uvicorn.access INFO 2024-02-23 14:38:32,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 | |
| 3845 galaxy.tools INFO 2024-02-23 14:38:34,946 [pN:main.1,p:78709,tN:WSGI_8] Validated and populated state for tool request (4.404 ms) | |
| 3846 galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_report for tool ncbi_fcs_adaptor (0.981 ms) | |
| 3847 galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.660 ms) | |
| 3848 galaxy.tools.actions DEBUG 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' | |
| 3849 galaxy.tools.actions INFO 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.348 ms) | |
| 3850 galaxy.tools.actions DEBUG 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' | |
| 3851 galaxy.tools.actions INFO 2024-02-23 14:38:34,958 [pN:main.1,p:78709,tN:WSGI_8] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.229 ms) | |
| 3852 galaxy.tools.actions INFO 2024-02-23 14:38:34,966 [pN:main.1,p:78709,tN:WSGI_8] Added output datasets to history (7.143 ms) | |
| 3853 galaxy.tools.actions INFO 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.981 ms) | |
| 3854 galaxy.tools.execute DEBUG 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor created job None (19.954 ms) | |
| 3855 galaxy.web_stack.handlers INFO 2024-02-23 14:38:34,988 [pN:main.1,p:78709,tN:WSGI_8] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method | |
| 3856 galaxy.tools.execute DEBUG 2024-02-23 14:38:34,991 [pN:main.1,p:78709,tN:WSGI_8] Created 1 job(s) for tool ncbi_fcs_adaptor request (45.036 ms) | |
| 3857 uvicorn.access INFO 2024-02-23 14:38:35,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "POST /api/tools HTTP/1.1" 200 | |
| 3858 uvicorn.access INFO 2024-02-23 14:38:35,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 | |
| 3859 uvicorn.access INFO 2024-02-23 14:38:35,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:25.956Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 | |
| 3860 uvicorn.access INFO 2024-02-23 14:38:35,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3861 uvicorn.access INFO 2024-02-23 14:38:35,156 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33940 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 3862 galaxy.jobs.mapper DEBUG 2024-02-23 14:38:35,297 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local | |
| 3863 galaxy.jobs.handler DEBUG 2024-02-23 14:38:35,300 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner | |
| 3864 galaxy.jobs DEBUG 2024-02-23 14:38:35,305 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) | |
| 3865 galaxy.jobs DEBUG 2024-02-23 14:38:35,310 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/4 | |
| 3866 galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,316 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [4] queued (15.787 ms) | |
| 3867 galaxy.jobs.handler INFO 2024-02-23 14:38:35,323 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched | |
| 3868 galaxy.jobs DEBUG 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Job wrapper for Job [4] prepared (36.045 ms) | |
| 3869 galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] | |
| 3870 galaxy.jobs.command_factory INFO 2024-02-23 14:38:35,400 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] | |
| 3871 galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,453 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) command is: mkdir -p working outputs configs | |
| 3872 if [ -d _working ]; then | |
| 3873 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs | |
| 3874 else | |
| 3875 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs | |
| 3876 fi | |
| 3877 cd working; | |
| 3878 _on_exit() { | |
| 3879 docker kill 0ed49ce4b7a6495fb6c27a5f2b8c6565 &> /dev/null | |
| 3880 } | |
| 3881 trap _on_exit EXIT | |
| 3882 docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 | |
| 3883 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 | |
| 3884 | |
| 3885 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 0ed49ce4b7a6495fb6c27a5f2b8c6565 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4:/tmp/tmpqrlh6ih1/job_working_directory/000/4:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/working:/tmp/tmpqrlh6ih1/job_working_directory/000/4/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.ec; | |
| 3886 if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat" ; fi; | |
| 3887 if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat" ; fi; | |
| 3888 if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat" ; fi; | |
| 3889 if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/4'; | |
| 3890 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" | |
| 3891 galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:35,474 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh | |
| 3892 uvicorn.access INFO 2024-02-23 14:38:37,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3893 uvicorn.access INFO 2024-02-23 14:38:38,198 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /history/current_history_json?since=2024-02-23T19:38:34.000978 HTTP/1.1" 200 | |
| 3894 uvicorn.access INFO 2024-02-23 14:38:38,234 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:35.061Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 | |
| 3895 uvicorn.access INFO 2024-02-23 14:38:38,279 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3896 uvicorn.access INFO 2024-02-23 14:38:38,301 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40740 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 3897 uvicorn.access INFO 2024-02-23 14:38:41,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40750 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3898 uvicorn.access INFO 2024-02-23 14:38:44,323 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40762 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3899 uvicorn.access INFO 2024-02-23 14:38:47,347 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3900 uvicorn.access INFO 2024-02-23 14:38:47,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3901 uvicorn.access INFO 2024-02-23 14:38:50,375 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47224 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3902 uvicorn.access INFO 2024-02-23 14:38:53,406 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47236 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3903 uvicorn.access INFO 2024-02-23 14:38:56,435 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3904 uvicorn.access INFO 2024-02-23 14:38:57,596 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3905 uvicorn.access INFO 2024-02-23 14:38:59,466 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3906 uvicorn.access INFO 2024-02-23 14:39:02,494 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55264 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3907 uvicorn.access INFO 2024-02-23 14:39:05,526 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55266 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3908 uvicorn.access INFO 2024-02-23 14:39:07,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3909 uvicorn.access INFO 2024-02-23 14:39:08,555 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3910 uvicorn.access INFO 2024-02-23 14:39:11,592 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37560 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3911 uvicorn.access INFO 2024-02-23 14:39:14,624 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37564 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3912 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:15,076 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 79120 | |
| 3913 galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:15,077 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh | |
| 3914 galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat to /tmp/tmpqrlh6ih1/files/b/a/a/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat | |
| 3915 galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat to /tmp/tmpqrlh6ih1/files/6/1/5/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat | |
| 3916 galaxy.model.metadata DEBUG 2024-02-23 14:39:15,113 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 3 | |
| 3917 galaxy.model.metadata DEBUG 2024-02-23 14:39:15,119 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 | |
| 3918 galaxy.jobs DEBUG 2024-02-23 14:39:15,151 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (54.675 ms) | |
| 3919 uvicorn.access INFO 2024-02-23 14:39:17,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3920 uvicorn.access INFO 2024-02-23 14:39:17,658 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 | |
| 3921 uvicorn.access INFO 2024-02-23 14:39:17,696 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:38.206Z HTTP/1.1" 200 | |
| 3922 uvicorn.access INFO 2024-02-23 14:39:17,760 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3923 uvicorn.access INFO 2024-02-23 14:39:17,793 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46772 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 3924 uvicorn.access INFO 2024-02-23 14:39:20,763 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 | |
| 3925 uvicorn.access INFO 2024-02-23 14:39:22,402 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 | |
| 3926 uvicorn.access INFO 2024-02-23 14:39:23,795 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 | |
| 3927 uvicorn.access INFO 2024-02-23 14:39:26,829 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 | |
| 3928 uvicorn.access INFO 2024-02-23 14:39:27,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3929 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:28,194 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 79227 | |
| 3930 galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:28,195 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh | |
| 3931 galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat to /tmp/tmpqrlh6ih1/files/4/1/8/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat | |
| 3932 galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat to /tmp/tmpqrlh6ih1/files/4/1/d/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat | |
| 3933 galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat to /tmp/tmpqrlh6ih1/files/5/c/6/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat | |
| 3934 galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat to /tmp/tmpqrlh6ih1/files/9/2/e/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat | |
| 3935 galaxy.model.metadata DEBUG 2024-02-23 14:39:28,232 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 5 | |
| 3936 galaxy.model.metadata DEBUG 2024-02-23 14:39:28,236 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 6 | |
| 3937 galaxy.model.metadata DEBUG 2024-02-23 14:39:28,239 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 7 | |
| 3938 galaxy.model.metadata DEBUG 2024-02-23 14:39:28,263 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 8 | |
| 3939 galaxy.jobs DEBUG 2024-02-23 14:39:28,325 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 4 executed (110.502 ms) | |
| 3940 uvicorn.access INFO 2024-02-23 14:39:29,867 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 | |
| 3941 uvicorn.access INFO 2024-02-23 14:39:29,913 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:39:17.665Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 | |
| 3942 uvicorn.access INFO 2024-02-23 14:39:29,971 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3943 uvicorn.access INFO 2024-02-23 14:39:29,997 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 | |
| 3944 uvicorn.access INFO 2024-02-23 14:39:31,162 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /datasets/b35bb5a57277f2b7/display/?preview=True HTTP/1.1" 200 | |
| 3945 uvicorn.access INFO 2024-02-23 14:39:31,188 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /static/dist/generic.bundled.js?v=1707855697000 HTTP/1.1" 200 | |
| 3946 uvicorn.access INFO 2024-02-23 14:39:32,982 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3947 uvicorn.access INFO 2024-02-23 14:39:36,015 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3948 uvicorn.access INFO 2024-02-23 14:39:37,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3949 uvicorn.access INFO 2024-02-23 14:39:39,044 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3950 uvicorn.access INFO 2024-02-23 14:39:41,064 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /datasets/d6674a497e11acb0/display/?preview=True HTTP/1.1" 200 | |
| 3951 uvicorn.access INFO 2024-02-23 14:39:42,071 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3952 uvicorn.access INFO 2024-02-23 14:39:45,103 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44972 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3953 uvicorn.access INFO 2024-02-23 14:39:47,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3954 uvicorn.access INFO 2024-02-23 14:39:48,131 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3955 uvicorn.access INFO 2024-02-23 14:39:51,163 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45876 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3956 uvicorn.access INFO 2024-02-23 14:39:53,838 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 | |
| 3957 /scratch/rico/galaxy/lib/galaxy/model/__init__.py:494: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. | |
| 3958 return self.text_metrics + self.numeric_metrics | |
| 3959 uvicorn.access INFO 2024-02-23 14:39:53,877 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 | |
| 3960 uvicorn.access INFO 2024-02-23 14:39:54,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/datasets/b35bb5a57277f2b7/storage HTTP/1.1" 200 | |
| 3961 uvicorn.access INFO 2024-02-23 14:39:54,048 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/datasets/b35bb5a57277f2b7/inheritance_chain HTTP/1.1" 200 | |
| 3962 uvicorn.access INFO 2024-02-23 14:39:54,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/jobs/b35bb5a57277f2b7/destination_params HTTP/1.1" 200 | |
| 3963 uvicorn.access INFO 2024-02-23 14:39:54,110 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/b35bb5a57277f2b7/metrics?hda_ldda=hda HTTP/1.1" 200 | |
| 3964 uvicorn.access INFO 2024-02-23 14:39:54,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7/parameters_display?hda_ldda=hda HTTP/1.1" 200 | |
| 3965 uvicorn.access INFO 2024-02-23 14:39:54,188 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 | |
| 3966 uvicorn.access INFO 2024-02-23 14:39:54,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 | |
| 3967 uvicorn.access INFO 2024-02-23 14:39:54,229 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3968 uvicorn.access INFO 2024-02-23 14:39:54,268 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 | |
| 3969 uvicorn.access INFO 2024-02-23 14:39:54,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 | |
| 3970 uvicorn.access INFO 2024-02-23 14:39:54,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 | |
| 3971 uvicorn.access INFO 2024-02-23 14:39:54,351 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3972 uvicorn.access INFO 2024-02-23 14:39:54,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 | |
| 3973 uvicorn.access INFO 2024-02-23 14:39:54,378 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 | |
| 3974 uvicorn.access INFO 2024-02-23 14:39:54,381 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 | |
| 3975 uvicorn.access INFO 2024-02-23 14:39:57,260 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3976 uvicorn.access INFO 2024-02-23 14:39:57,600 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3977 uvicorn.access INFO 2024-02-23 14:40:00,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57804 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3978 uvicorn.access INFO 2024-02-23 14:40:03,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57812 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3979 uvicorn.access INFO 2024-02-23 14:40:06,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3980 uvicorn.access INFO 2024-02-23 14:40:07,601 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 3981 uvicorn.access INFO 2024-02-23 14:40:09,387 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3982 uvicorn.access INFO 2024-02-23 14:40:10,214 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 | |
| 3983 uvicorn.access INFO 2024-02-23 14:40:11,651 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 | |
| 3984 uvicorn.access INFO 2024-02-23 14:40:11,722 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 | |
| 3985 uvicorn.access INFO 2024-02-23 14:40:11,808 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 | |
| 3986 uvicorn.access INFO 2024-02-23 14:40:11,849 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57276 - "GET /api/datasets/d6674a497e11acb0/inheritance_chain HTTP/1.1" 200 | |
| 3987 uvicorn.access INFO 2024-02-23 14:40:11,873 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57268 - "GET /api/datasets/d6674a497e11acb0/storage HTTP/1.1" 200 | |
| 3988 uvicorn.access INFO 2024-02-23 14:40:11,906 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57302 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 | |
| 3989 uvicorn.access INFO 2024-02-23 14:40:11,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57284 - "GET /api/datasets/d6674a497e11acb0/metrics?hda_ldda=hda HTTP/1.1" 200 | |
| 3990 uvicorn.access INFO 2024-02-23 14:40:11,930 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 | |
| 3991 uvicorn.access INFO 2024-02-23 14:40:11,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0/parameters_display?hda_ldda=hda HTTP/1.1" 200 | |
| 3992 uvicorn.access INFO 2024-02-23 14:40:11,949 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57276 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 3993 uvicorn.access INFO 2024-02-23 14:40:11,985 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57268 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 | |
| 3994 uvicorn.access INFO 2024-02-23 14:40:11,986 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57302 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 | |
| 3995 uvicorn.access INFO 2024-02-23 14:40:12,024 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57284 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 | |
| 3996 uvicorn.access INFO 2024-02-23 14:40:12,056 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 | |
| 3997 uvicorn.access INFO 2024-02-23 14:40:12,068 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 | |
| 3998 uvicorn.access INFO 2024-02-23 14:40:12,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 3999 uvicorn.access INFO 2024-02-23 14:40:15,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57310 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4000 uvicorn.access INFO 2024-02-23 14:40:17,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32830 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4001 uvicorn.access INFO 2024-02-23 14:40:18,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32830 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4002 uvicorn.access INFO 2024-02-23 14:40:21,506 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32842 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4003 uvicorn.access INFO 2024-02-23 14:40:24,543 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32854 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4004 uvicorn.access INFO 2024-02-23 14:40:27,578 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53704 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4005 uvicorn.access INFO 2024-02-23 14:40:27,607 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53704 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4006 uvicorn.access INFO 2024-02-23 14:40:30,608 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4007 uvicorn.access INFO 2024-02-23 14:40:31,252 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 | |
| 4008 uvicorn.access INFO 2024-02-23 14:40:31,362 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 | |
| 4009 uvicorn.access INFO 2024-02-23 14:40:33,640 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53728 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4010 uvicorn.access INFO 2024-02-23 14:40:36,669 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4011 uvicorn.access INFO 2024-02-23 14:40:37,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4012 uvicorn.access INFO 2024-02-23 14:40:37,724 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 | |
| 4013 uvicorn.access INFO 2024-02-23 14:40:39,699 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4014 uvicorn.access INFO 2024-02-23 14:40:42,730 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59542 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4015 uvicorn.access INFO 2024-02-23 14:40:45,762 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4016 uvicorn.access INFO 2024-02-23 14:40:47,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4017 uvicorn.access INFO 2024-02-23 14:40:48,791 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4018 uvicorn.access INFO 2024-02-23 14:40:51,823 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59208 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4019 uvicorn.access INFO 2024-02-23 14:40:54,824 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59214 - "GET /datasets/4aa1fa05efd4b363/display/?preview=True HTTP/1.1" 200 | |
| 4020 uvicorn.access INFO 2024-02-23 14:40:54,850 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59214 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4021 uvicorn.access INFO 2024-02-23 14:40:57,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /datasets/9d64888131bc67e9/display/?preview=True HTTP/1.1" 200 | |
| 4022 uvicorn.access INFO 2024-02-23 14:40:57,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4023 uvicorn.access INFO 2024-02-23 14:40:57,924 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4024 uvicorn.access INFO 2024-02-23 14:41:00,329 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49040 - "GET /datasets/e331579530f91b88/display/?preview=True HTTP/1.1" 200 | |
| 4025 uvicorn.access INFO 2024-02-23 14:41:00,952 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49040 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4026 uvicorn.access INFO 2024-02-23 14:41:03,981 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4027 uvicorn.access INFO 2024-02-23 14:41:05,964 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 | |
| 4028 uvicorn.access INFO 2024-02-23 14:41:07,016 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4029 uvicorn.access INFO 2024-02-23 14:41:07,728 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4030 uvicorn.access INFO 2024-02-23 14:41:08,614 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /datasets/9a32e5e3a6abd4e7/display/?preview=True HTTP/1.1" 200 | |
| 4031 uvicorn.access INFO 2024-02-23 14:41:10,059 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4032 uvicorn.access INFO 2024-02-23 14:41:11,938 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 | |
| 4033 uvicorn.access INFO 2024-02-23 14:41:11,976 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 | |
| 4034 uvicorn.access INFO 2024-02-23 14:41:12,059 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7/parameters_display?hda_ldda=hda HTTP/1.1" 200 | |
| 4035 uvicorn.access INFO 2024-02-23 14:41:12,119 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/datasets/9a32e5e3a6abd4e7/metrics?hda_ldda=hda HTTP/1.1" 200 | |
| 4036 uvicorn.access INFO 2024-02-23 14:41:12,132 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/datasets/9a32e5e3a6abd4e7/inheritance_chain HTTP/1.1" 200 | |
| 4037 uvicorn.access INFO 2024-02-23 14:41:12,146 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59492 - "GET /api/datasets/9a32e5e3a6abd4e7/storage HTTP/1.1" 200 | |
| 4038 uvicorn.access INFO 2024-02-23 14:41:12,166 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59514 - "GET /api/jobs/d6674a497e11acb0/destination_params HTTP/1.1" 200 | |
| 4039 uvicorn.access INFO 2024-02-23 14:41:12,244 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 | |
| 4040 uvicorn.access INFO 2024-02-23 14:41:12,269 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 | |
| 4041 uvicorn.access INFO 2024-02-23 14:41:12,363 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 | |
| 4042 uvicorn.access INFO 2024-02-23 14:41:12,389 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 | |
| 4043 uvicorn.access INFO 2024-02-23 14:41:12,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/datasets/4aa1fa05efd4b363?view=detailed HTTP/1.1" 200 | |
| 4044 uvicorn.access INFO 2024-02-23 14:41:12,418 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59514 - "GET /api/datasets/e331579530f91b88?view=detailed HTTP/1.1" 200 | |
| 4045 uvicorn.access INFO 2024-02-23 14:41:12,419 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59492 - "GET /api/datasets/9d64888131bc67e9?view=detailed HTTP/1.1" 200 | |
| 4046 uvicorn.access INFO 2024-02-23 14:41:12,465 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 | |
| 4047 uvicorn.access INFO 2024-02-23 14:41:12,474 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/configuration/decode/9a32e5e3a6abd4e7 HTTP/1.1" 200 | |
| 4048 uvicorn.access INFO 2024-02-23 14:41:12,483 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 4049 uvicorn.access INFO 2024-02-23 14:41:12,486 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 | |
| 4050 uvicorn.access INFO 2024-02-23 14:41:13,090 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4051 uvicorn.access INFO 2024-02-23 14:41:16,123 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4052 uvicorn.access INFO 2024-02-23 14:41:17,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4053 uvicorn.access INFO 2024-02-23 14:41:19,153 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4054 uvicorn.access INFO 2024-02-23 14:41:19,907 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /datasets/9a32e5e3a6abd4e7/display/?preview=True HTTP/1.1" 200 | |
| 4055 uvicorn.access INFO 2024-02-23 14:41:22,005 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 | |
| 4056 uvicorn.access INFO 2024-02-23 14:41:22,037 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 | |
| 4057 uvicorn.access INFO 2024-02-23 14:41:22,141 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/9a32e5e3a6abd4e7/parameters_display?hda_ldda=hda HTTP/1.1" 200 | |
| 4058 uvicorn.access INFO 2024-02-23 14:41:22,162 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53318 - "GET /api/datasets/9a32e5e3a6abd4e7/inheritance_chain HTTP/1.1" 200 | |
| 4059 uvicorn.access INFO 2024-02-23 14:41:22,168 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/9a32e5e3a6abd4e7/storage HTTP/1.1" 200 | |
| 4060 uvicorn.access INFO 2024-02-23 14:41:22,200 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 | |
| 4061 uvicorn.access INFO 2024-02-23 14:41:22,233 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 | |
| 4062 uvicorn.access INFO 2024-02-23 14:41:22,250 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4063 uvicorn.access INFO 2024-02-23 14:41:22,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/e331579530f91b88?view=detailed HTTP/1.1" 200 | |
| 4064 uvicorn.access INFO 2024-02-23 14:41:22,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 | |
| 4065 uvicorn.access INFO 2024-02-23 14:41:22,377 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 | |
| 4066 uvicorn.access INFO 2024-02-23 14:41:22,397 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53348 - "GET /api/datasets/4aa1fa05efd4b363?view=detailed HTTP/1.1" 200 | |
| 4067 uvicorn.access INFO 2024-02-23 14:41:22,410 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53318 - "GET /api/datasets/9d64888131bc67e9?view=detailed HTTP/1.1" 200 | |
| 4068 uvicorn.access INFO 2024-02-23 14:41:22,424 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 | |
| 4069 uvicorn.access INFO 2024-02-23 14:41:22,456 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 | |
| 4070 uvicorn.access INFO 2024-02-23 14:41:22,462 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/configuration/decode/9a32e5e3a6abd4e7 HTTP/1.1" 200 | |
| 4071 uvicorn.access INFO 2024-02-23 14:41:22,468 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 | |
| 4072 uvicorn.access INFO 2024-02-23 14:41:25,288 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53356 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4073 uvicorn.access INFO 2024-02-23 14:41:27,733 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4074 uvicorn.access INFO 2024-02-23 14:41:28,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4075 uvicorn.access INFO 2024-02-23 14:41:32,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58948 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4076 | |
| 4077 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 4078 [2024-02-23 14:41:34,178: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 4079 [2024-02-23 14:41:34,179: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) | |
| 4080 [2024-02-23 14:41:34,195: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->f5e83b64-c60a-4621-bc5d-a6516ea91ec9 | |
| 4081 [2024-02-23 14:41:34,196: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 4082 | |
| 4083 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 4084 [2024-02-23 14:41:35,030: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] received | |
| 4085 [2024-02-23 14:41:35,031: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '52a407fc-3529-4119-bd33-a501e38607aa'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) | |
| 4086 [2024-02-23 14:41:35,033: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.532 ms) | |
| 4087 [2024-02-23 14:41:35,034: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] succeeded in 0.0018830089829862118s: None | |
| 4088 | |
| 4089 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 4090 uvicorn.access INFO 2024-02-23 14:41:38,212 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54156 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4091 uvicorn.access INFO 2024-02-23 14:41:48,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53112 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4092 uvicorn.access INFO 2024-02-23 14:41:59,218 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4093 uvicorn.access INFO 2024-02-23 14:42:07,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38240 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4094 uvicorn.access INFO 2024-02-23 14:42:09,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4095 uvicorn.access INFO 2024-02-23 14:42:10,121 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4096 uvicorn.access INFO 2024-02-23 14:42:11,819 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 | |
| 4097 uvicorn.access INFO 2024-02-23 14:42:11,910 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 | |
| 4098 uvicorn.access INFO 2024-02-23 14:42:13,151 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4099 uvicorn.access INFO 2024-02-23 14:42:16,179 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40396 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4100 uvicorn.access INFO 2024-02-23 14:42:19,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40404 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4101 uvicorn.access INFO 2024-02-23 14:42:19,221 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4102 uvicorn.access INFO 2024-02-23 14:42:21,206 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 | |
| 4103 uvicorn.access INFO 2024-02-23 14:42:22,239 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4104 uvicorn.access INFO 2024-02-23 14:42:25,268 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40428 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4105 uvicorn.access INFO 2024-02-23 14:42:28,299 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54006 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4106 uvicorn.access INFO 2024-02-23 14:42:29,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54006 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4107 uvicorn.access INFO 2024-02-23 14:42:31,328 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54008 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4108 uvicorn.access INFO 2024-02-23 14:42:34,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54024 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4109 uvicorn.access INFO 2024-02-23 14:42:37,390 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4110 uvicorn.access INFO 2024-02-23 14:42:39,218 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4111 uvicorn.access INFO 2024-02-23 14:42:40,419 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4112 uvicorn.access INFO 2024-02-23 14:42:43,450 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60564 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4113 uvicorn.access INFO 2024-02-23 14:42:46,483 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59152 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4114 uvicorn.access INFO 2024-02-23 14:42:50,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59156 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4115 uvicorn.access INFO 2024-02-23 14:42:50,226 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59160 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4116 uvicorn.access INFO 2024-02-23 14:43:00,219 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35248 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4117 uvicorn.access INFO 2024-02-23 14:43:10,212 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51892 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4118 uvicorn.access INFO 2024-02-23 14:43:21,208 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47266 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4119 uvicorn.access INFO 2024-02-23 14:43:31,217 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56258 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4120 uvicorn.access INFO 2024-02-23 14:43:41,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45128 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4121 uvicorn.access INFO 2024-02-23 14:43:51,208 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53190 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4122 uvicorn.access INFO 2024-02-23 14:44:03,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44558 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4123 uvicorn.access INFO 2024-02-23 14:44:21,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35914 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4124 uvicorn.access INFO 2024-02-23 14:44:21,111 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35922 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4125 uvicorn.access INFO 2024-02-23 14:44:24,142 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35934 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4126 uvicorn.access INFO 2024-02-23 14:44:27,170 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46974 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4127 uvicorn.access INFO 2024-02-23 14:44:30,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46978 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4128 uvicorn.access INFO 2024-02-23 14:44:31,076 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46978 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4129 uvicorn.access INFO 2024-02-23 14:44:33,228 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46980 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4130 uvicorn.access INFO 2024-02-23 14:44:36,257 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59440 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4131 uvicorn.access INFO 2024-02-23 14:44:39,287 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4132 uvicorn.access INFO 2024-02-23 14:44:41,080 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4133 uvicorn.access INFO 2024-02-23 14:44:42,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4134 uvicorn.access INFO 2024-02-23 14:44:45,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59446 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4135 uvicorn.access INFO 2024-02-23 14:44:48,387 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33128 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4136 uvicorn.access INFO 2024-02-23 14:44:51,081 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33136 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4137 uvicorn.access INFO 2024-02-23 14:44:51,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33136 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4138 uvicorn.access INFO 2024-02-23 14:44:54,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33146 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4139 uvicorn.access INFO 2024-02-23 14:44:57,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59288 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4140 uvicorn.access INFO 2024-02-23 14:45:00,507 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59292 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4141 uvicorn.access INFO 2024-02-23 14:45:01,083 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59292 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4142 uvicorn.access INFO 2024-02-23 14:45:03,547 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59304 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4143 uvicorn.access INFO 2024-02-23 14:45:06,581 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50814 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4144 uvicorn.access INFO 2024-02-23 14:45:09,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4145 uvicorn.access INFO 2024-02-23 14:45:11,084 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4146 uvicorn.access INFO 2024-02-23 14:45:12,643 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4147 uvicorn.access INFO 2024-02-23 14:45:15,672 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4148 uvicorn.access INFO 2024-02-23 14:45:18,702 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55654 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4149 uvicorn.access INFO 2024-02-23 14:45:21,086 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55666 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4150 uvicorn.access INFO 2024-02-23 14:45:21,730 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55666 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4151 uvicorn.access INFO 2024-02-23 14:45:25,210 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55680 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4152 uvicorn.access INFO 2024-02-23 14:45:26,488 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55680 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4153 uvicorn.access INFO 2024-02-23 14:45:29,524 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4154 uvicorn.access INFO 2024-02-23 14:45:31,088 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4155 uvicorn.access INFO 2024-02-23 14:45:32,554 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4156 uvicorn.access INFO 2024-02-23 14:45:35,586 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43896 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4157 uvicorn.access INFO 2024-02-23 14:45:38,615 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60812 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4158 uvicorn.access INFO 2024-02-23 14:45:41,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60828 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4159 uvicorn.access INFO 2024-02-23 14:45:41,646 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60828 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4160 uvicorn.access INFO 2024-02-23 14:45:44,678 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60840 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4161 uvicorn.access INFO 2024-02-23 14:45:47,716 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34606 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4162 uvicorn.access INFO 2024-02-23 14:45:50,747 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34620 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4163 uvicorn.access INFO 2024-02-23 14:45:51,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34620 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4164 uvicorn.access INFO 2024-02-23 14:45:53,780 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34624 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4165 uvicorn.access INFO 2024-02-23 14:45:56,810 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43404 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4166 uvicorn.access INFO 2024-02-23 14:45:59,843 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4167 uvicorn.access INFO 2024-02-23 14:46:01,093 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4168 uvicorn.access INFO 2024-02-23 14:46:02,885 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4169 uvicorn.access INFO 2024-02-23 14:46:05,916 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55884 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4170 uvicorn.access INFO 2024-02-23 14:46:08,951 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55896 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4171 uvicorn.access INFO 2024-02-23 14:46:11,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55910 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4172 uvicorn.access INFO 2024-02-23 14:46:11,983 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55910 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4173 uvicorn.access INFO 2024-02-23 14:46:15,013 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55920 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4174 uvicorn.access INFO 2024-02-23 14:46:18,043 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42768 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4175 uvicorn.access INFO 2024-02-23 14:46:21,074 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42780 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4176 uvicorn.access INFO 2024-02-23 14:46:21,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42794 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4177 uvicorn.access INFO 2024-02-23 14:46:24,116 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42804 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4178 uvicorn.access INFO 2024-02-23 14:46:27,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45726 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4179 uvicorn.access INFO 2024-02-23 14:46:30,176 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4180 uvicorn.access INFO 2024-02-23 14:46:31,096 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4181 uvicorn.access INFO 2024-02-23 14:46:33,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45732 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4182 | |
| 4183 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 4184 [2024-02-23 14:46:34,296: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 4185 [2024-02-23 14:46:34,297: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 4186 | |
| 4187 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 4188 uvicorn.access INFO 2024-02-23 14:46:36,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48966 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4189 uvicorn.access INFO 2024-02-23 14:46:39,266 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4190 uvicorn.access INFO 2024-02-23 14:46:41,098 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4191 uvicorn.access INFO 2024-02-23 14:46:42,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4192 uvicorn.access INFO 2024-02-23 14:46:45,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48996 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4193 uvicorn.access INFO 2024-02-23 14:46:48,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37342 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4194 uvicorn.access INFO 2024-02-23 14:46:51,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37354 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4195 uvicorn.access INFO 2024-02-23 14:46:51,384 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37354 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4196 uvicorn.access INFO 2024-02-23 14:46:54,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37356 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4197 uvicorn.access INFO 2024-02-23 14:46:57,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59558 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4198 uvicorn.access INFO 2024-02-23 14:47:00,478 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59572 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4199 uvicorn.access INFO 2024-02-23 14:47:01,102 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59572 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4200 uvicorn.access INFO 2024-02-23 14:47:03,507 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59582 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4201 uvicorn.access INFO 2024-02-23 14:47:06,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48358 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4202 uvicorn.access INFO 2024-02-23 14:47:09,566 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4203 uvicorn.access INFO 2024-02-23 14:47:11,103 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4204 uvicorn.access INFO 2024-02-23 14:47:12,592 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4205 uvicorn.access INFO 2024-02-23 14:47:15,621 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48386 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4206 uvicorn.access INFO 2024-02-23 14:47:18,657 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4207 uvicorn.access INFO 2024-02-23 14:47:21,107 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50650 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4208 uvicorn.access INFO 2024-02-23 14:47:21,686 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50650 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4209 uvicorn.access INFO 2024-02-23 14:47:24,717 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50664 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4210 uvicorn.access INFO 2024-02-23 14:47:27,747 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42422 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4211 uvicorn.access INFO 2024-02-23 14:47:30,777 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42436 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4212 uvicorn.access INFO 2024-02-23 14:47:31,107 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42436 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4213 uvicorn.access INFO 2024-02-23 14:47:33,807 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42440 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4214 uvicorn.access INFO 2024-02-23 14:47:36,836 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46004 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4215 uvicorn.access INFO 2024-02-23 14:47:39,863 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4216 uvicorn.access INFO 2024-02-23 14:47:41,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4217 uvicorn.access INFO 2024-02-23 14:47:42,892 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4218 uvicorn.access INFO 2024-02-23 14:47:45,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57628 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4219 uvicorn.access INFO 2024-02-23 14:47:48,951 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57632 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4220 uvicorn.access INFO 2024-02-23 14:47:51,111 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57644 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4221 uvicorn.access INFO 2024-02-23 14:47:51,978 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4222 uvicorn.access INFO 2024-02-23 14:47:55,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57660 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4223 uvicorn.access INFO 2024-02-23 14:47:58,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49826 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4224 uvicorn.access INFO 2024-02-23 14:48:01,065 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4225 uvicorn.access INFO 2024-02-23 14:48:01,109 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4226 uvicorn.access INFO 2024-02-23 14:48:04,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49856 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4227 uvicorn.access INFO 2024-02-23 14:48:11,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43370 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4228 uvicorn.access INFO 2024-02-23 14:48:22,200 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56118 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4229 uvicorn.access INFO 2024-02-23 14:48:32,203 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46388 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4230 uvicorn.access INFO 2024-02-23 14:48:43,205 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44136 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4231 uvicorn.access INFO 2024-02-23 14:48:53,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51218 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4232 uvicorn.access INFO 2024-02-23 14:49:05,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59494 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4233 uvicorn.access INFO 2024-02-23 14:50:03,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58916 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4234 uvicorn.access INFO 2024-02-23 14:50:06,195 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56064 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4235 uvicorn.access INFO 2024-02-23 14:51:03,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46606 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4236 uvicorn.access INFO 2024-02-23 14:51:07,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58106 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4237 | |
| 4238 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 4239 [2024-02-23 14:51:34,270: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 4240 [2024-02-23 14:51:34,271: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) | |
| 4241 [2024-02-23 14:51:34,287: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->2e7725dc-31d4-4d56-8afd-8dae5ec0815c | |
| 4242 [2024-02-23 14:51:34,288: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 4243 | |
| 4244 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 4245 [2024-02-23 14:51:35,170: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] received | |
| 4246 [2024-02-23 14:51:35,171: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3b2497f6-7230-41ee-afbb-d68e1f75fbfd'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) | |
| 4247 [2024-02-23 14:51:35,174: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.612 ms) | |
| 4248 [2024-02-23 14:51:35,174: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] succeeded in 0.0025258829118683934s: None | |
| 4249 | |
| 4250 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== | |
| 4251 uvicorn.access INFO 2024-02-23 14:52:03,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34074 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4252 uvicorn.access INFO 2024-02-23 14:52:08,198 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46298 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4253 uvicorn.access INFO 2024-02-23 14:53:03,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52976 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4254 uvicorn.access INFO 2024-02-23 14:53:04,797 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52976 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4255 uvicorn.access INFO 2024-02-23 14:53:08,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56382 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4256 uvicorn.access INFO 2024-02-23 14:53:14,193 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56384 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4257 uvicorn.access INFO 2024-02-23 14:53:24,195 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57160 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4258 uvicorn.access INFO 2024-02-23 14:53:35,193 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37546 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4259 uvicorn.access INFO 2024-02-23 14:53:45,192 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47560 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4260 uvicorn.access INFO 2024-02-23 14:53:55,194 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53882 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4261 uvicorn.access INFO 2024-02-23 14:54:09,190 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52604 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4262 uvicorn.access INFO 2024-02-23 14:54:19,613 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42472 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4263 uvicorn.access INFO 2024-02-23 14:54:19,616 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42476 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4264 uvicorn.access INFO 2024-02-23 14:54:22,643 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42492 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4265 uvicorn.access INFO 2024-02-23 14:54:25,672 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44058 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4266 uvicorn.access INFO 2024-02-23 14:54:28,700 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44072 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4267 uvicorn.access INFO 2024-02-23 14:54:29,595 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44072 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4268 uvicorn.access INFO 2024-02-23 14:54:31,729 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44088 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4269 uvicorn.access INFO 2024-02-23 14:54:34,768 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44090 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4270 uvicorn.access INFO 2024-02-23 14:54:37,802 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4271 uvicorn.access INFO 2024-02-23 14:54:39,595 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4272 uvicorn.access INFO 2024-02-23 14:54:40,835 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4273 uvicorn.access INFO 2024-02-23 14:54:43,874 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60140 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4274 uvicorn.access INFO 2024-02-23 14:54:46,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45230 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4275 uvicorn.access INFO 2024-02-23 14:54:49,596 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45246 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4276 uvicorn.access INFO 2024-02-23 14:54:49,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45246 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4277 uvicorn.access INFO 2024-02-23 14:54:52,972 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45260 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4278 uvicorn.access INFO 2024-02-23 14:54:56,003 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50512 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4279 uvicorn.access INFO 2024-02-23 14:54:59,031 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50520 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4280 uvicorn.access INFO 2024-02-23 14:54:59,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50520 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4281 uvicorn.access INFO 2024-02-23 14:55:02,064 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50532 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4282 uvicorn.access INFO 2024-02-23 14:55:05,104 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50546 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4283 uvicorn.access INFO 2024-02-23 14:55:08,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4284 uvicorn.access INFO 2024-02-23 14:55:09,600 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4285 uvicorn.access INFO 2024-02-23 14:55:11,164 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4286 uvicorn.access INFO 2024-02-23 14:55:14,192 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54122 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4287 uvicorn.access INFO 2024-02-23 14:55:17,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44288 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4288 uvicorn.access INFO 2024-02-23 14:55:19,605 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44296 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4289 uvicorn.access INFO 2024-02-23 14:55:20,251 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44296 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4290 uvicorn.access INFO 2024-02-23 14:55:23,280 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44312 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4291 uvicorn.access INFO 2024-02-23 14:55:26,311 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39666 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4292 uvicorn.access INFO 2024-02-23 14:55:29,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4293 uvicorn.access INFO 2024-02-23 14:55:29,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4294 uvicorn.access INFO 2024-02-23 14:55:32,371 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39686 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4295 uvicorn.access INFO 2024-02-23 14:55:35,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39696 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4296 uvicorn.access INFO 2024-02-23 14:55:38,427 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4297 uvicorn.access INFO 2024-02-23 14:55:39,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4298 uvicorn.access INFO 2024-02-23 14:55:41,455 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4299 uvicorn.access INFO 2024-02-23 14:55:44,482 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55490 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4300 uvicorn.access INFO 2024-02-23 14:55:47,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38200 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4301 uvicorn.access INFO 2024-02-23 14:55:49,607 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /api/entry_points?running=true HTTP/1.1" 200 | |
| 4302 uvicorn.access INFO 2024-02-23 14:55:50,551 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4303 uvicorn.access INFO 2024-02-23 14:55:53,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38218 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4304 uvicorn.access INFO 2024-02-23 14:55:56,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40354 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 | |
| 4305 | |
| 4306 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 4307 [2024-02-23 14:56:34,388: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 4308 [2024-02-23 14:56:34,389: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 4309 [2024-02-23 15:01:34,361: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 4310 [2024-02-23 15:01:34,363: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) | |
| 4311 [2024-02-23 15:01:34,379: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->535f1714-1353-40ac-acee-799c6b05d637 | |
| 4312 [2024-02-23 15:01:34,380: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 4313 | |
| 4314 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 4315 [2024-02-23 15:01:35,002: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] received | |
| 4316 [2024-02-23 15:01:35,002: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '535f1714-1353-40ac-acee-799c6b05d637', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '535f1714-1353-40ac-acee-799c6b05d637', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '535f1714-1353-40ac-acee-799c6b05d637', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '02332643-0c8b-4178-9919-02885eee82d3'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) | |
| 4317 [2024-02-23 15:01:35,005: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.552 ms) | |
| 4318 [2024-02-23 15:01:35,040: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] succeeded in 0.03627739998046309s: None | |
| 4319 | |
| 4320 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== | |
| 4321 [2024-02-23 15:06:34,480: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 4322 [2024-02-23 15:06:34,482: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 4323 [2024-02-23 15:11:34,383: DEBUG/MainProcess] beat: Synchronizing schedule... | |
| 4324 [2024-02-23 15:11:34,384: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) | |
| 4325 [2024-02-23 15:11:34,400: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->6eb22bfa-2bec-4d16-ba81-b677c429938a | |
| 4326 [2024-02-23 15:11:34,400: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. | |
| 4327 | |
| 4328 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== | |
| 4329 [2024-02-23 15:11:35,103: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] received | |
| 4330 [2024-02-23 15:11:35,104: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '6eb22bfa-2bec-4d16-ba81-b677c429938a', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'f8974f4e-d12f-44c5-8432-dd8db2f74b43'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) | |
| 4331 [2024-02-23 15:11:35,107: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.548 ms) | |
| 4332 [2024-02-23 15:11:35,107: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] succeeded in 0.0018642700742930174s: None |