Mercurial > repos > richard-burhans > ncbi_fcs_adaptor

diff doit.bash @ 0:d55ad8533d58 draft default tip

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
author richard-burhans
date Fri, 01 Mar 2024 18:26:57 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/doit.bash	Fri Mar 01 18:26:57 2024 +0000
@@ -0,0 +1,15 @@
+#!/usr/bin/env bash
+
+export "PLANEMO_GLOBAL_CONFIG_PATH=/scratch/rico/.planemo"
+export "PLANEMO_GLOBAL_WORKSPACE=/scratch/rico/.planemo"
+
+rm -rf /tmp/tmp* /scratch/rico/.planemo
+
+planemo \
+    --verbose \
+    serve \
+    --job_config_file=/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml \
+    --no_cleanup \
+    --galaxy_root=/scratch/rico/galaxy 2>&1 \
+    | tee serve.log
+