Mercurial > repos > richard-burhans > rdeval
diff rdeval.xml @ 7:40a03830a38c draft
planemo upload for repository https://github.com/vgl-hub/rdeval commit 43ccb622d6797100955195be47409ab4a60dd1d5
| author | richard-burhans |
|---|---|
| date | Mon, 05 May 2025 21:01:33 +0000 |
| parents | 24b05d3958d7 |
| children | 37d67c252fed |
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--- a/rdeval.xml Mon May 05 17:51:10 2025 +0000 +++ b/rdeval.xml Mon May 05 21:01:33 2025 +0000 @@ -9,10 +9,15 @@ #set $mangled_inputs = [] #for $input in $input_reads #set $mangled_base = re.sub(r"[^\w\-\s]", "_", str($input.element_identifier)) - #if str($input.ext).lower().startswith("fastq") - #set $mangled_ext = "fastq" + #set $input_ext = str($input.ext).lower() + #if $input_ext.startswith("fastq") + #if $input_ext.endswith(".gz") + #set $mangled_ext = "fastq.gz" + #else + #set $mangled_ext = "fastq" + #end if #else - #set $mangled_ext = str($input.ext) + #set $mangled_ext = $input_ext #end if #set $mangled_input = $mangled_base + "." + $mangled_ext #silent $mangled_inputs.append($mangled_input)