# HG changeset patch # User richard-burhans # Date 1746467470 0 # Node ID 24b05d3958d734b8a93fa99cbd2beff3d9fd5921 # Parent 7cfeba6facd11c2e8e3af2a2482b4e5281e71106 planemo upload for repository https://github.com/vgl-hub/rdeval commit 344add351131179b6c41777e7574823ef678e7a7 diff -r 7cfeba6facd1 -r 24b05d3958d7 macros.xml --- a/macros.xml Fri May 02 22:49:30 2025 +0000 +++ b/macros.xml Mon May 05 17:51:10 2025 +0000 @@ -5,7 +5,7 @@ 0.0.7 - 0 + 1 23.02 diff -r 7cfeba6facd1 -r 24b05d3958d7 rdeval.xml --- a/rdeval.xml Fri May 02 22:49:30 2025 +0000 +++ b/rdeval.xml Mon May 05 17:51:10 2025 +0000 @@ -9,7 +9,12 @@ #set $mangled_inputs = [] #for $input in $input_reads #set $mangled_base = re.sub(r"[^\w\-\s]", "_", str($input.element_identifier)) - #set $mangled_input = $mangled_base + "." + str($input.ext) + #if str($input.ext).lower().startswith("fastq") + #set $mangled_ext = "fastq" + #else + #set $mangled_ext = str($input.ext) + #end if + #set $mangled_input = $mangled_base + "." + $mangled_ext #silent $mangled_inputs.append($mangled_input) ln -s '$input' '$mangled_input' && #end for @@ -82,7 +87,7 @@ - + @@ -268,6 +273,8 @@ **rdeval** accepts an arbitrary number of sequencing files and optionally **filters**, **subsamples**, and/or **compresses homopolymers** within the reads. The retained reads can be saved in multiple formats, and metrics on these reads can be stored in a '*sketch*' file. Statistics can then be efficiently retrieved from these sketch files for further processing. .. image:: pipeline.svg + :alt: pipeline diagram + :align: left Filtering ========= diff -r 7cfeba6facd1 -r 24b05d3958d7 static/images/pipeline.svg --- a/static/images/pipeline.svg Fri May 02 22:49:30 2025 +0000 +++ b/static/images/pipeline.svg Mon May 05 17:51:10 2025 +0000 @@ -2,9 +2,9 @@ + id="layer1" + transform="translate(-16.361184,-35.29722)">