# HG changeset patch
# User richard-burhans
# Date 1746478893 0
# Node ID 40a03830a38c627e3dc293470a00f82571436fe8
# Parent  24b05d3958d734b8a93fa99cbd2beff3d9fd5921
planemo upload for repository https://github.com/vgl-hub/rdeval commit 43ccb622d6797100955195be47409ab4a60dd1d5

diff -r 24b05d3958d7 -r 40a03830a38c macros.xml
--- a/macros.xml	Mon May 05 17:51:10 2025 +0000
+++ b/macros.xml	Mon May 05 21:01:33 2025 +0000
@@ -5,7 +5,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.0.7</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">23.02</token>
     <xml name="citations">
         <citations>
diff -r 24b05d3958d7 -r 40a03830a38c rdeval.xml
--- a/rdeval.xml	Mon May 05 17:51:10 2025 +0000
+++ b/rdeval.xml	Mon May 05 21:01:33 2025 +0000
@@ -9,10 +9,15 @@
     #set $mangled_inputs = []
     #for $input in $input_reads
         #set $mangled_base = re.sub(r"[^\w\-\s]", "_", str($input.element_identifier))
-        #if str($input.ext).lower().startswith("fastq")
-            #set $mangled_ext = "fastq"
+        #set $input_ext = str($input.ext).lower()
+        #if $input_ext.startswith("fastq")
+            #if $input_ext.endswith(".gz")
+                #set $mangled_ext = "fastq.gz"
+            #else
+                #set $mangled_ext = "fastq"
+            #end if
         #else
-            #set $mangled_ext = str($input.ext)
+            #set $mangled_ext = $input_ext
         #end if
         #set $mangled_input = $mangled_base + "." + $mangled_ext
         #silent $mangled_inputs.append($mangled_input)