Mercurial > repos > richard-burhans > segalign
annotate ungapped_extension_options.xml @ 9:08e987868f0f draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 062a761a340e095ea7ef7ed7cd1d3d55b1fdc5c4
author | richard-burhans |
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date | Wed, 10 Jul 2024 17:06:45 +0000 |
parents | 5c72425b7f1b |
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5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
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changeset
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1 <macros> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
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changeset
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2 <xml name="ungapped_extension_options"> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
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3 <section name="ungapped_extension_options" expanded="false" title="Ungapped Extension Options"> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
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4 <param argument="--xdrop" type="integer" value="910" label="X-drop value for gap-free extension"/> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
|
5 <param argument="--hspthresh" type="integer" value="3000" label="Segment score threshold for high scoring pairs"/> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
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6 <param argument="--noentropy" type="boolean" checked="false" label="Don't adjust low score segment pair scores using entropy factor after filtering stage"/> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
|
7 </section> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
|
8 </xml> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
|
9 </macros> |