annotate gapped_extension_options.xml @ 11:168b0a92edd3 draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 53e28d4dd9ab352c94f91f952ac855b89197f032
author richard-burhans
date Fri, 12 Jul 2024 23:00:03 +0000 (5 months ago)
parents 5c72425b7f1b
children f9e91add973c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
1 <macros>
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
2 <xml name="gapped_extension_options">
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
3 <section name="gapped_extension_options" expanded="false" title="Gapped Extension Options">
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
4 <param argument="--nogapped" type="boolean" checked="false" label="Don't perform gapped extension stage"/>
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
5 <param argument="--ydrop" type="integer" value="9430" label="Y-drop value for gapped extension"/>
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
6 <param argument="--gappedthresh" type="integer" value="" optional="true" label="Score threshold for gapped alignments"/>
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
7 <param argument="--notrivial" type="boolean" checked="false" label="Don't output a trivial self-alignment block if the target and query sequences are identical"/>
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
8 </section>
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
9 </xml>
5c72425b7f1b planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff changeset
10 </macros>