Mercurial > repos > richard-burhans > segalign
annotate gapped_extension_options.xml @ 11:168b0a92edd3 draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 53e28d4dd9ab352c94f91f952ac855b89197f032
author | richard-burhans |
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date | Fri, 12 Jul 2024 23:00:03 +0000 (5 months ago) |
parents | 5c72425b7f1b |
children | f9e91add973c |
rev | line source |
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5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
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1 <macros> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
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2 <xml name="gapped_extension_options"> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
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3 <section name="gapped_extension_options" expanded="false" title="Gapped Extension Options"> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
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4 <param argument="--nogapped" type="boolean" checked="false" label="Don't perform gapped extension stage"/> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
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5 <param argument="--ydrop" type="integer" value="9430" label="Y-drop value for gapped extension"/> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
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6 <param argument="--gappedthresh" type="integer" value="" optional="true" label="Score threshold for gapped alignments"/> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
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7 <param argument="--notrivial" type="boolean" checked="false" label="Don't output a trivial self-alignment block if the target and query sequences are identical"/> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
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8 </section> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
diff
changeset
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9 </xml> |
5c72425b7f1b
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
richard-burhans
parents:
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10 </macros> |