annotate scoring_options.xml @ 0:5c72425b7f1b draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b

<macros>
    <xml name="scoring_options">
        <section name="scoring_options" expanded="false" title="Scoring Options">
            <param argument="--scoring" type="data" value="false" optional="true" format="txt" label="Scoring file in LASTZ format"/>
            <param name="ambiguous_selector" type="select" label="Ambiguous Nucleotides">
                <option value="x" selected="true">None</option>
                <option value="n">N</option>
                <option value="iupac">IUPAC</option>
            </param>
            <conditional name="ambiguous_params">
                <param name="set_ambiguous_params_selector" type="select" label="Set Ambiguous Nucleotide Scoring Parameters">
                    <option value="false" selected="true">No</option>
                    <option value="true">Yes</option>
                </param>
                <when value="false">
                    <!-- Do nothing -->
                </when>
                <when value="true">
                    <param name="ambiguous_reward" type="integer" value="0" label="Ambiguous Nucleotide Reward"/>
                    <param name="ambiguous_penalty" type="integer" value="0" label="Ambiguous Nucleotide Penalty"/>
                </when>
            </conditional>
        </section>
    </xml>
</macros>