comparison package_output.py @ 11:168b0a92edd3 draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 53e28d4dd9ab352c94f91f952ac855b89197f032
author richard-burhans
date Fri, 12 Jul 2024 23:00:03 +0000
parents 08e987868f0f
children 4966e095e3c3
comparison
equal deleted inserted replaced
10:ec709ce3d91b 11:168b0a92edd3
268 def visitheredoc(self, n: bashlex.ast.node, value: typing.Any) -> None: 268 def visitheredoc(self, n: bashlex.ast.node, value: typing.Any) -> None:
269 pass 269 pass
270 270
271 271
272 def main() -> None: 272 def main() -> None:
273 our_dirname: str = os.path.dirname(os.path.realpath(__file__)) 273 parser = argparse.ArgumentParser()
274 lastz_command_config_file: str = os.path.join(our_dirname, "lastz-cmd.ini") 274 parser.add_argument("--tool_directory", type=str, required=True, help="tool directory")
275 args = parser.parse_args()
276
277 lastz_command_config_file: str = os.path.join(args.tool_directory, "lastz-cmd.ini")
275 278
276 config: configparser.ConfigParser = configparser.ConfigParser() 279 config: configparser.ConfigParser = configparser.ConfigParser()
277 config.read(lastz_command_config_file) 280 config.read(lastz_command_config_file)
278 281
279 package_file = PackageFile() 282 package_file = PackageFile()