Mercurial > repos > richard-burhans > segalign
comparison package_output.py @ 11:168b0a92edd3 draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 53e28d4dd9ab352c94f91f952ac855b89197f032
author | richard-burhans |
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date | Fri, 12 Jul 2024 23:00:03 +0000 |
parents | 08e987868f0f |
children | 4966e095e3c3 |
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10:ec709ce3d91b | 11:168b0a92edd3 |
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268 def visitheredoc(self, n: bashlex.ast.node, value: typing.Any) -> None: | 268 def visitheredoc(self, n: bashlex.ast.node, value: typing.Any) -> None: |
269 pass | 269 pass |
270 | 270 |
271 | 271 |
272 def main() -> None: | 272 def main() -> None: |
273 our_dirname: str = os.path.dirname(os.path.realpath(__file__)) | 273 parser = argparse.ArgumentParser() |
274 lastz_command_config_file: str = os.path.join(our_dirname, "lastz-cmd.ini") | 274 parser.add_argument("--tool_directory", type=str, required=True, help="tool directory") |
275 args = parser.parse_args() | |
276 | |
277 lastz_command_config_file: str = os.path.join(args.tool_directory, "lastz-cmd.ini") | |
275 | 278 |
276 config: configparser.ConfigParser = configparser.ConfigParser() | 279 config: configparser.ConfigParser = configparser.ConfigParser() |
277 config.read(lastz_command_config_file) | 280 config.read(lastz_command_config_file) |
278 | 281 |
279 package_file = PackageFile() | 282 package_file = PackageFile() |