comparison runner.py @ 20:96ff17622b17 draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 4b56e02cfd6394c55895dd013105c4ef04519842
author richard-burhans
date Wed, 07 Aug 2024 20:34:45 +0000
parents cefa7625d6cb
children 25fa179d9d0a
comparison
equal deleted inserted replaced
19:cefa7625d6cb 20:96ff17622b17
384 384
385 if args.debug: 385 if args.debug:
386 beg: int = time.monotonic_ns() 386 beg: int = time.monotonic_ns()
387 r_beg = resource.getrusage(resource.RUSAGE_CHILDREN) 387 r_beg = resource.getrusage(resource.RUSAGE_CHILDREN)
388 388
389 process = subprocess.run(run_args, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True) 389 process = subprocess.run(run_args, stdout=subprocess.PIPE, stderr=subprocess.PIPE, bufsize=1, text=True)
390 390
391 for line in process.stdout.splitlines(): 391 for line in process.stdout.splitlines():
392 commands.add(line) 392 commands.add(line)
393 segalign_q.put(line) 393 segalign_q.put(line)
394 394