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comparison serve.log @ 1:d3f11ae6790c draft

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
author richard-burhans
date Thu, 18 Apr 2024 16:51:46 +0000
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0:5c72425b7f1b 1:d3f11ae6790c
1 Created directory for Galaxy configuration [/scratch/rico/tmp/tmp12w4107b]
2 Writing dependency_resolvers_config_file to path /scratch/rico/tmp/tmp12w4107b/resolvers_conf.xml with contents [<dependency_resolvers>
3 <tool_shed_packages />
4 <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/afs/bx.psu.edu/home/rico/.planemo/condarc" />
5 <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/afs/bx.psu.edu/home/rico/.planemo/condarc" />
6 </dependency_resolvers>
7 ]
8 Writing tool_conf to path /scratch/rico/tmp/tmp12w4107b/tool_conf.xml with contents [<toolbox>
9 <tool file="data_source/upload.xml" />
10 <tool file="/scratch/rico/galaxytools/tools/segalign/segalign.xml" />
11 </toolbox>
12 ]
13 Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/afs/bx.psu.edu/home/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --server-name main]
14 With environment variables:
15 ============================
16 GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key"
17 GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu"
18 GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True"
19 GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory"
20 GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True"
21 GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False"
22 GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True"
23 GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo"
24 GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True"
25 GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never"
26 GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org"
27 GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main"
28 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}"
29 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False"
30 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/segalign/test-data"
31 GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data"
32 GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False"
33 GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/scratch/rico/tmp/tmp12w4107b/deps"
34 GALAXY_CONFIG_OVERRIDE_FILE_PATH="/scratch/rico/tmp/tmp12w4107b/files"
35 GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/scratch/rico/tmp/tmp12w4107b/tmp"
36 GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/tool_conf.xml,/scratch/rico/tmp/tmp12w4107b/shed_tools_conf.xml"
37 GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml"
38 GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False"
39 GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/scratch/rico/tmp/tmp12w4107b/job_working_directory"
40 GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/scratch/rico/tmp/tmp12w4107b/compiled_templates"
41 GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file"
42 GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/scratch/rico/tmp/tmp12w4107b/citations/data"
43 GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/scratch/rico/tmp/tmp12w4107b/citations/lock"
44 GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True"
45 GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True"
46 GALAXY_CONFIG_OVERRIDE_ID_SECRET="6bf329f92f26d5526e6bcd233e8760d0"
47 GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG"
48 GALAXY_CONFIG_OVERRIDE_DEBUG="true"
49 GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto"
50 GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash"
51 GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/scratch/rico/tmp/tmp12w4107b/integrated_tool_panel_conf.xml"
52 GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/scratch/rico/tmp/tmp12w4107b/empty_tool_conf.xml"
53 GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/segalign/test-data"
54 GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/shed_data_manager_conf.xml"
55 GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True"
56 GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid"
57 GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite?isolation_level=IMMEDIATE"
58 GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/job_conf.xml"
59 GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/job_metrics_conf.xml"
60 GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/resolvers_conf.xml"
61 GALAXY_SKIP_CLIENT_BUILD="1"
62 GALAXY_DEVELOPMENT_ENVIRONMENT="1"
63 GALAXY_LOG="main.log"
64 GALAXY_PID="main.pid"
65 GALAXY_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/galaxy.yml"
66 GRAVITY_STATE_DIR="/scratch/rico/tmp/tmp12w4107b/gravity"
67 SUPERVISORD_SOCKET="/scratch/rico/tmp/tmpz69kch1_.sock"
68 ============================
69 galaxy.util.commands WARNING 2024-04-17 16:39:24,421: Passing program arguments as a string may be a security hazard if combined with untrusted input
70 Set $GALAXY_VIRTUAL_ENV to /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3
71 Virtual environment directory exists.
72 Set $GALAXY_VIRTUAL_ENV to /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3
73 Virtual environment directory exists.
74 Activated a virtualenv for Galaxy
75 /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3
76 /scratch/rico/galaxy
77 /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin/python
78 /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin/pip
79 /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3
80 /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3
81 .
82 ..
83 check_model.sh
84 .ci
85 .circleci
86 CITATION
87 client
88 CODE_OF_CONDUCT.md
89 config
90 contrib
91 CONTRIBUTING.md
92 CONTRIBUTORS.md
93 .coveragerc
94 create_toolshed_db.sh
95 cron
96 database
97 doc
98 .dockerignore
99 extract_dataset_parts.sh
100 .flake8
101 .git
102 .gitattributes
103 .git-blame-ignore-revs
104 .github
105 .gitignore
106 .gitpod.yml
107 hooks
108 .isort.cfg
109 .k8s_ci.Dockerfile
110 lib
111 LICENSE.txt
112 main.log
113 Makefile
114 manage_db.sh
115 manage_toolshed_db.sh
116 mypy.ini
117 package.json
118 packages
119 .pre-commit-config.yaml.sample
120 pyproject.toml
121 pytest.ini
122 README.rst
123 .redocly.lint-ignore.yaml
124 .redocly.yaml
125 requirements.txt
126 rolling_restart.sh
127 run_reports.sh
128 run.sh
129 run_tests.sh
130 run_tool_shed.sh
131 scripts
132 SECURITY.md
133 static
134 templates
135 test
136 test-data
137 tool-data
138 tools
139 tox.ini
140 tsconfig.json
141 .vscode
142 Activating virtualenv at /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3
143 Requirement already satisfied: pip>=20.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (24.0)
144 Requirement already satisfied: wheel in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (0.43.0)
145 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple, https://wheels.galaxyproject.org/simple
146 Ignoring asynctest: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
147 Ignoring cached-property: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
148 Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment
149 Ignoring numpy: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
150 Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment
151 Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment
152 Requirement already satisfied: a2wsgi==1.6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.6.0)
153 Requirement already satisfied: adal==1.2.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (1.2.7)
154 Requirement already satisfied: aiofiles==22.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 5)) (22.1.0)
155 Requirement already satisfied: aiohttp==3.8.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 6)) (3.8.3)
156 Requirement already satisfied: aiosignal==1.3.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 7)) (1.3.1)
157 Requirement already satisfied: alembic-utils==0.7.8 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 8)) (0.7.8)
158 Requirement already satisfied: alembic==1.9.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 9)) (1.9.2)
159 Requirement already satisfied: amqp==5.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 10)) (5.1.1)
160 Requirement already satisfied: anyio==3.6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 11)) (3.6.2)
161 Requirement already satisfied: apispec==6.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 12)) (6.0.2)
162 Requirement already satisfied: appdirs==1.4.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 13)) (1.4.4)
163 Requirement already satisfied: arcp==0.2.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 14)) (0.2.1)
164 Requirement already satisfied: argcomplete==2.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 15)) (2.0.0)
165 Requirement already satisfied: async-timeout==4.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 16)) (4.0.2)
166 Requirement already satisfied: attmap==0.13.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 18)) (0.13.2)
167 Requirement already satisfied: attrs==22.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 19)) (22.2.0)
168 Requirement already satisfied: babel==2.11.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 20)) (2.11.0)
169 Requirement already satisfied: bagit-profile==1.3.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 21)) (1.3.1)
170 Requirement already satisfied: bagit==1.8.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 22)) (1.8.1)
171 Requirement already satisfied: bcrypt==4.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 23)) (4.0.1)
172 Requirement already satisfied: bdbag==1.6.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 24)) (1.6.3)
173 Requirement already satisfied: beaker==1.11.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 25)) (1.11.0)
174 Requirement already satisfied: billiard==3.6.4.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 26)) (3.6.4.0)
175 Requirement already satisfied: bioblend==1.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 27)) (1.0.0)
176 Requirement already satisfied: bleach==5.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 28)) (5.0.1)
177 Requirement already satisfied: boltons==21.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 29)) (21.0.0)
178 Requirement already satisfied: boto==2.49.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 30)) (2.49.0)
179 Requirement already satisfied: bx-python==0.9.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 31)) (0.9.0)
180 Requirement already satisfied: cachecontrol==0.12.11 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 32)) (0.12.11)
181 Requirement already satisfied: celery==5.2.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 35)) (5.2.7)
182 Requirement already satisfied: certifi==2022.12.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 36)) (2022.12.7)
183 Requirement already satisfied: cffi==1.15.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 37)) (1.15.1)
184 Requirement already satisfied: charset-normalizer==2.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 38)) (2.1.1)
185 Requirement already satisfied: cheetah3==3.2.6.post1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 39)) (3.2.6.post1)
186 Requirement already satisfied: circus==0.18.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 40)) (0.18.0)
187 Requirement already satisfied: click-didyoumean==0.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 41)) (0.3.0)
188 Requirement already satisfied: click-plugins==1.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 42)) (1.1.1)
189 Requirement already satisfied: click-repl==0.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 43)) (0.2.0)
190 Requirement already satisfied: click==8.1.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 44)) (8.1.3)
191 Requirement already satisfied: cloudauthz==0.6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 45)) (0.6.0)
192 Requirement already satisfied: cloudbridge==3.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 46)) (3.1.0)
193 Requirement already satisfied: coloredlogs==15.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 48)) (15.0.1)
194 Requirement already satisfied: conda-package-streaming==0.7.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 49)) (0.7.0)
195 Requirement already satisfied: cryptography==39.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 50)) (39.0.0)
196 Requirement already satisfied: cwl-upgrader==1.2.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 51)) (1.2.4)
197 Requirement already satisfied: cwl-utils==0.21 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 52)) (0.21)
198 Requirement already satisfied: cwltool==3.1.20221109155812 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 53)) (3.1.20221109155812)
199 Requirement already satisfied: cython==0.29.34 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 54)) (0.29.34)
200 Requirement already satisfied: decorator==5.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 55)) (5.1.1)
201 Requirement already satisfied: defusedxml==0.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 56)) (0.7.1)
202 Requirement already satisfied: deprecation==2.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 57)) (2.1.0)
203 Requirement already satisfied: dictobj==0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 58)) (0.4)
204 Requirement already satisfied: dnspython==2.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 59)) (2.3.0)
205 Requirement already satisfied: docopt==0.6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 60)) (0.6.2)
206 Requirement already satisfied: docutils==0.16 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 61)) (0.16)
207 Requirement already satisfied: ecdsa==0.18.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 62)) (0.18.0)
208 Requirement already satisfied: edam-ontology==1.25.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 63)) (1.25.2)
209 Requirement already satisfied: email-validator==1.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 64)) (1.3.0)
210 Requirement already satisfied: fastapi-utils==0.2.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 65)) (0.2.1)
211 Requirement already satisfied: fastapi==0.91.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 66)) (0.91.0)
212 Requirement already satisfied: flupy==1.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 67)) (1.2.0)
213 Requirement already satisfied: frozenlist==1.3.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 68)) (1.3.3)
214 Requirement already satisfied: fs==2.4.16 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 69)) (2.4.16)
215 Requirement already satisfied: funcsigs==1.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 70)) (1.0.2)
216 Requirement already satisfied: future==0.18.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 71)) (0.18.3)
217 Requirement already satisfied: galaxy-sequence-utils==1.1.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 72)) (1.1.5)
218 Requirement already satisfied: galaxy2cwl==0.1.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 73)) (0.1.4)
219 Requirement already satisfied: gravity==1.0.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 74)) (1.0.3)
220 Requirement already satisfied: greenlet==2.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 75)) (2.0.1)
221 Requirement already satisfied: gunicorn==20.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 76)) (20.1.0)
222 Requirement already satisfied: gxformat2==0.18.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 77)) (0.18.0)
223 Requirement already satisfied: h11==0.14.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 78)) (0.14.0)
224 Requirement already satisfied: h5py==3.8.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 79)) (3.8.0)
225 Requirement already satisfied: humanfriendly==10.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 80)) (10.0)
226 Requirement already satisfied: idna==3.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 81)) (3.4)
227 Requirement already satisfied: importlib-metadata==4.13.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 82)) (4.13.0)
228 Requirement already satisfied: importlib-resources==5.10.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 83)) (5.10.2)
229 Requirement already satisfied: isa-rwval==0.10.10 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 84)) (0.10.10)
230 Requirement already satisfied: isodate==0.6.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 85)) (0.6.1)
231 Requirement already satisfied: jinja2==3.1.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 86)) (3.1.2)
232 Requirement already satisfied: jsonref==1.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 87)) (1.1.0)
233 Requirement already satisfied: jsonschema==4.17.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 88)) (4.17.3)
234 Requirement already satisfied: kombu==5.2.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 89)) (5.2.4)
235 Requirement already satisfied: lagom==2.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 90)) (2.2.0)
236 Requirement already satisfied: lockfile==0.12.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 91)) (0.12.2)
237 Requirement already satisfied: lxml==4.9.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 92)) (4.9.2)
238 Requirement already satisfied: mako==1.2.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 93)) (1.2.4)
239 Requirement already satisfied: markdown-it-py==2.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 94)) (2.1.0)
240 Requirement already satisfied: markdown==3.4.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 95)) (3.4.1)
241 Requirement already satisfied: markupsafe==2.1.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 96)) (2.1.2)
242 Requirement already satisfied: mdurl==0.1.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 97)) (0.1.2)
243 Requirement already satisfied: mercurial==6.3.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 98)) (6.3.2)
244 Requirement already satisfied: mistune==2.0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 99)) (2.0.4)
245 Requirement already satisfied: mrcfile==1.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 100)) (1.4.3)
246 Requirement already satisfied: msgpack==1.0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 101)) (1.0.4)
247 Requirement already satisfied: multidict==6.0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 102)) (6.0.4)
248 Requirement already satisfied: mypy-extensions==0.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 103)) (0.4.3)
249 Requirement already satisfied: networkx==2.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 104)) (2.5)
250 Requirement already satisfied: nodeenv==1.7.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 105)) (1.7.0)
251 Requirement already satisfied: numpy==1.24.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 107)) (1.24.1)
252 Requirement already satisfied: oauthlib==3.2.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 108)) (3.2.2)
253 Requirement already satisfied: oyaml==1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 109)) (1.0)
254 Requirement already satisfied: packaging==21.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 110)) (21.3)
255 Requirement already satisfied: paramiko==3.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 111)) (3.0.0)
256 Requirement already satisfied: parse==1.19.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 112)) (1.19.0)
257 Requirement already satisfied: parsley==1.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 113)) (1.3)
258 Requirement already satisfied: paste==3.5.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 114)) (3.5.2)
259 Requirement already satisfied: pastedeploy==3.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 115)) (3.0.1)
260 Requirement already satisfied: pbr==5.11.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 116)) (5.11.1)
261 Requirement already satisfied: pebble==5.0.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 117)) (5.0.3)
262 Requirement already satisfied: pkgutil-resolve-name==1.3.10 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 118)) (1.3.10)
263 Requirement already satisfied: prompt-toolkit==3.0.36 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 119)) (3.0.36)
264 Requirement already satisfied: prov==1.5.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 120)) (1.5.1)
265 Requirement already satisfied: psutil==5.9.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 121)) (5.9.4)
266 Requirement already satisfied: pulsar-galaxy-lib==0.15.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 122)) (0.15.5)
267 Requirement already satisfied: pyasn1==0.4.8 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 123)) (0.4.8)
268 Requirement already satisfied: pycparser==2.21 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 124)) (2.21)
269 Requirement already satisfied: pycryptodome==3.16.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 125)) (3.16.0)
270 Requirement already satisfied: pydantic-tes==0.1.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 126)) (0.1.5)
271 Requirement already satisfied: pydantic==1.10.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 127)) (1.10.4)
272 Requirement already satisfied: pydot==1.4.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 129)) (1.4.2)
273 Requirement already satisfied: pyeventsystem==0.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 130)) (0.1.0)
274 Requirement already satisfied: pyfaidx==0.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 131)) (0.7.1)
275 Requirement already satisfied: pygments==2.14.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 132)) (2.14.0)
276 Requirement already satisfied: pyjwt==2.6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 133)) (2.6.0)
277 Requirement already satisfied: pykwalify==1.8.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 134)) (1.8.0)
278 Requirement already satisfied: pylibmagic==0.2.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 135)) (0.2.2)
279 Requirement already satisfied: pynacl==1.5.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 136)) (1.5.0)
280 Requirement already satisfied: pyparsing==3.0.9 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 137)) (3.0.9)
281 Requirement already satisfied: pyrsistent==0.19.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 140)) (0.19.3)
282 Requirement already satisfied: pysam==0.21.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 141)) (0.21.0)
283 Requirement already satisfied: python-dateutil==2.8.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 142)) (2.8.2)
284 Requirement already satisfied: python-jose==3.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 143)) (3.3.0)
285 Requirement already satisfied: python-magic==0.4.27 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 144)) (0.4.27)
286 Requirement already satisfied: python-multipart==0.0.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 145)) (0.0.7)
287 Requirement already satisfied: python3-openid==3.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 146)) (3.2.0)
288 Requirement already satisfied: pytz==2022.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 147)) (2022.7.1)
289 Requirement already satisfied: pyyaml==6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 148)) (6.0)
290 Requirement already satisfied: pyzmq==25.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 149)) (25.0.0)
291 Requirement already satisfied: rdflib==6.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 150)) (6.2.0)
292 Requirement already satisfied: refgenconf==0.12.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 151)) (0.12.2)
293 Requirement already satisfied: repoze-lru==0.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 152)) (0.7)
294 Requirement already satisfied: requests-oauthlib==1.3.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 153)) (1.3.1)
295 Requirement already satisfied: requests-toolbelt==0.10.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 154)) (0.10.1)
296 Requirement already satisfied: requests-unixsocket==0.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 155)) (0.3.0)
297 Requirement already satisfied: requests==2.28.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 156)) (2.28.2)
298 Requirement already satisfied: rich==13.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 157)) (13.2.0)
299 Requirement already satisfied: rocrate==0.7.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 158)) (0.7.0)
300 Requirement already satisfied: routes==2.5.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 159)) (2.5.1)
301 Requirement already satisfied: rsa==4.9 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 160)) (4.9)
302 Requirement already satisfied: ruamel-yaml-clib==0.2.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 161)) (0.2.7)
303 Requirement already satisfied: ruamel-yaml==0.17.21 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 162)) (0.17.21)
304 Requirement already satisfied: schema-salad==8.3.20230109181936 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 163)) (8.3.20230109181936)
305 Requirement already satisfied: setuptools-scm==5.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 164)) (5.0.2)
306 Requirement already satisfied: setuptools==66.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 165)) (66.1.1)
307 Requirement already satisfied: shellescape==3.8.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 166)) (3.8.1)
308 Requirement already satisfied: six==1.16.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 167)) (1.16.0)
309 Requirement already satisfied: sniffio==1.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 168)) (1.3.0)
310 Requirement already satisfied: social-auth-core==4.0.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from social-auth-core[openidconnect]==4.0.3->-r requirements.txt (line 169)) (4.0.3)
311 Requirement already satisfied: sortedcontainers==2.4.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 170)) (2.4.0)
312 Requirement already satisfied: sqlalchemy-migrate==0.13.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 171)) (0.13.0)
313 Requirement already satisfied: sqlalchemy==1.4.46 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 172)) (1.4.46)
314 Requirement already satisfied: sqlitedict==2.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 173)) (2.1.0)
315 Requirement already satisfied: sqlparse==0.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 174)) (0.4.3)
316 Requirement already satisfied: starlette-context==0.3.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 175)) (0.3.5)
317 Requirement already satisfied: starlette==0.24.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 176)) (0.24.0)
318 Requirement already satisfied: supervisor==4.2.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 177)) (4.2.5)
319 Requirement already satisfied: svgwrite==1.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 178)) (1.4.3)
320 Requirement already satisfied: tempita==0.5.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 179)) (0.5.2)
321 Requirement already satisfied: tenacity==8.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 180)) (8.1.0)
322 Requirement already satisfied: tifffile==2021.11.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 181)) (2021.11.2)
323 Requirement already satisfied: tinydb==4.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 182)) (4.7.1)
324 Requirement already satisfied: tornado==6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 183)) (6.2)
325 Requirement already satisfied: tqdm==4.64.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 184)) (4.64.1)
326 Requirement already satisfied: tuspy==1.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 185)) (1.0.0)
327 Requirement already satisfied: tuswsgi==0.5.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 186)) (0.5.5)
328 Requirement already satisfied: typing-extensions==4.4.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 187)) (4.4.0)
329 Requirement already satisfied: tzlocal==2.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 188)) (2.1)
330 Requirement already satisfied: ubiquerg==0.6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 189)) (0.6.2)
331 Requirement already satisfied: urllib3==1.26.14 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 190)) (1.26.14)
332 Requirement already satisfied: uvicorn==0.20.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 191)) (0.20.0)
333 Requirement already satisfied: uvloop==0.17.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 192)) (0.17.0)
334 Requirement already satisfied: vine==5.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 193)) (5.0.0)
335 Requirement already satisfied: wcwidth==0.2.6 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 194)) (0.2.6)
336 Requirement already satisfied: webencodings==0.5.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 195)) (0.5.1)
337 Requirement already satisfied: webob==1.8.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 196)) (1.8.7)
338 Requirement already satisfied: whoosh==2.7.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 197)) (2.7.4)
339 Requirement already satisfied: yacman==0.8.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 198)) (0.8.4)
340 Requirement already satisfied: yarl==1.8.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 199)) (1.8.2)
341 Requirement already satisfied: zipp==3.11.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 200)) (3.11.0)
342 Requirement already satisfied: zipstream-new==1.1.8 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 201)) (1.1.8)
343 Requirement already satisfied: zstandard>=0.15 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from conda-package-streaming==0.7.0->-r requirements.txt (line 49)) (0.22.0)
344 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple
345 Requirement already satisfied: watchdog in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r /dev/stdin (line 1)) (4.0.0)
346 The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable.
347 Activating virtualenv at /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3
348 Adding service gunicorn
349 Adding service celery
350 Adding service celery-beat
351 Executing: galaxy
352 2024-04-17 16:40:05,126 WARN No file matches via include "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/*.conf"
353 2024-04-17 16:40:05,127 INFO Included extra file "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery-beat_celery-beat.conf" during parsing
354 2024-04-17 16:40:05,127 INFO Included extra file "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery_celery.conf" during parsing
355 2024-04-17 16:40:05,127 INFO Included extra file "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_gunicorn_gunicorn.conf" during parsing
356 2024-04-17 16:40:05,323 INFO RPC interface 'supervisor' initialized
357 2024-04-17 16:40:05,324 CRIT Server 'unix_http_server' running without any HTTP authentication checking
358 2024-04-17 16:40:05,324 INFO supervisord started with pid 100445
359 2024-04-17 16:40:05,764 INFO spawned: 'celery' with pid 100447
360 2024-04-17 16:40:05,766 INFO spawned: 'celery-beat' with pid 100448
361 2024-04-17 16:40:05,769 INFO spawned: 'gunicorn' with pid 100449
362 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
363
364 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
365
366 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
367
368 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
369 Working directory: /scratch/rico/galaxy
370 Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/scratch/rico/tmp/tmp12w4107b/galaxy.yml celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external
371
372 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
373 Working directory: /scratch/rico/galaxy
374 Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/scratch/rico/tmp/tmp12w4107b/galaxy.yml gunicorn 'galaxy.webapps.galaxy.fast_factory:factory()' --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b 127.0.0.1:9090 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload
375
376 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
377 Working directory: /scratch/rico/galaxy
378 Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/scratch/rico/tmp/tmp12w4107b/galaxy.yml celery --app galaxy.celery beat --loglevel DEBUG --schedule /scratch/rico/tmp/tmp12w4107b/gravity/celery-beat-schedule
379
380 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
381 Option master_api_key has been deprecated in favor of bootstrap_admin_api_key
382
383 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
384 Option master_api_key has been deprecated in favor of bootstrap_admin_api_key
385 2024-04-17 16:40:15,880 INFO success: celery entered RUNNING state, process has stayed up for > than 10 seconds (startsecs)
386 2024-04-17 16:40:15,880 INFO success: celery-beat entered RUNNING state, process has stayed up for > than 10 seconds (startsecs)
387 2024-04-17 16:40:20,886 INFO success: gunicorn entered RUNNING state, process has stayed up for > than 15 seconds (startsecs)
388 [2024-04-17 16:40:22,090: DEBUG/MainProcess] Setting default socket timeout to 30
389 [2024-04-17 16:40:22,091: INFO/MainProcess] beat: Starting...
390
391 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
392 [2024-04-17 16:40:22,097: DEBUG/MainProcess] | Worker: Preparing bootsteps.
393 [2024-04-17 16:40:22,177: DEBUG/MainProcess] | Worker: Building graph...
394 [2024-04-17 16:40:22,178: DEBUG/MainProcess] | Worker: New boot order: {Timer, Hub, Pool, Autoscaler, Beat, StateDB, Consumer}
395
396 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
397 [2024-04-17 16:40:22,205: DEBUG/MainProcess] Current schedule:
398 <ScheduleEntry: prune-history-audit-table galaxy.prune_history_audit_table() <freq: 1.00 hour>
399 <ScheduleEntry: cleanup-short-term-storage galaxy.cleanup_short_term_storage() <freq: 1.00 hour>
400 <ScheduleEntry: celery.backend_cleanup celery.backend_cleanup() <crontab: 0 4 * * * (m/h/d/dM/MY)>
401 [2024-04-17 16:40:22,205: DEBUG/MainProcess] beat: Ticking with max interval->5.00 minutes
402 [2024-04-17 16:40:22,207: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
403
404 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
405 [2024-04-17 16:40:22,448: DEBUG/MainProcess] | Consumer: Preparing bootsteps.
406 [2024-04-17 16:40:22,449: DEBUG/MainProcess] | Consumer: Building graph...
407 [2024-04-17 16:40:22,628: DEBUG/MainProcess] | Consumer: New boot order: {Connection, Events, Mingle, Gossip, Tasks, Control, Agent, Heart, event loop}
408
409 -------------- celery@laila v5.2.7 (dawn-chorus)
410 --- ***** -----
411 -- ******* ---- Linux-4.19.0-26-amd64-x86_64-with-glibc2.28 2024-04-17 16:40:22
412 - *** --- * ---
413 - ** ---------- [config]
414 - ** ---------- .> app: galaxy:0x7faa418fc190
415 - ** ---------- .> transport: sqlalchemy+sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite
416 - ** ---------- .> results: disabled://
417 - *** --- * --- .> concurrency: 2 (thread)
418 -- ******* ---- .> task events: OFF (enable -E to monitor tasks in this worker)
419 --- ***** -----
420 -------------- [queues]
421 .> celery exchange=celery(direct) key=celery
422 .> galaxy.external exchange=galaxy.external(direct) key=galaxy.external
423 .> galaxy.internal exchange=galaxy.internal(direct) key=galaxy.internal
424
425 [tasks]
426 . celery.accumulate
427 . celery.backend_cleanup
428 . celery.chain
429 . celery.chord
430 . celery.chord_unlock
431 . celery.chunks
432 . celery.group
433 . celery.map
434 . celery.starmap
435 . galaxy.change_datatype
436 . galaxy.cleanup_short_term_storage
437 . galaxy.compute_dataset_hash
438 . galaxy.export_history
439 . galaxy.fetch_data
440 . galaxy.finish_job
441 . galaxy.import_data_bundle
442 . galaxy.import_model_store
443 . galaxy.materialize
444 . galaxy.prepare_dataset_collection_download
445 . galaxy.prepare_history_content_download
446 . galaxy.prepare_history_download
447 . galaxy.prepare_invocation_download
448 . galaxy.prepare_pdf_download
449 . galaxy.prune_history_audit_table
450 . galaxy.purge_hda
451 . galaxy.recalculate_user_disk_usage
452 . galaxy.set_job_metadata
453 . galaxy.set_metadata
454 . galaxy.setup_fetch_data
455 . galaxy.touch
456 . galaxy.write_history_content_to
457 . galaxy.write_history_to
458 . galaxy.write_invocation_to
459
460 [2024-04-17 16:40:22,684: DEBUG/MainProcess] | Worker: Starting Pool
461 [2024-04-17 16:40:22,685: DEBUG/MainProcess] ^-- substep ok
462 [2024-04-17 16:40:22,685: DEBUG/MainProcess] | Worker: Starting Consumer
463 [2024-04-17 16:40:22,685: DEBUG/MainProcess] | Consumer: Starting Connection
464 [2024-04-17 16:40:22,691: INFO/MainProcess] Connected to sqlalchemy+sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite
465 [2024-04-17 16:40:22,692: DEBUG/MainProcess] ^-- substep ok
466 [2024-04-17 16:40:22,692: DEBUG/MainProcess] | Consumer: Starting Events
467 [2024-04-17 16:40:22,692: DEBUG/MainProcess] ^-- substep ok
468 [2024-04-17 16:40:22,692: DEBUG/MainProcess] | Consumer: Starting Tasks
469 [2024-04-17 16:40:22,773: DEBUG/MainProcess] ^-- substep ok
470 [2024-04-17 16:40:22,773: DEBUG/MainProcess] | Consumer: Starting Heart
471 [2024-04-17 16:40:22,773: DEBUG/MainProcess] ^-- substep ok
472 [2024-04-17 16:40:22,773: DEBUG/MainProcess] | Consumer: Starting event loop
473 [2024-04-17 16:40:22,773: INFO/MainProcess] celery@laila ready.
474
475 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
476 DEBUG:galaxy.app:python path is: /scratch/rico/galaxy, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/local/lib/python38.zip, /usr/local/lib/python3.8, /usr/local/lib/python3.8/lib-dynload, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages
477 DEBUG:galaxy.config:Configuration directory is /scratch/rico/tmp/tmp12w4107b
478 DEBUG:galaxy.config:Data directory is /scratch/rico/galaxy/database
479 DEBUG:galaxy.config:Managed config directory is /scratch/rico/tmp/tmp12w4107b
480 WARNING:galaxy.config:Option master_api_key has been deprecated in favor of bootstrap_admin_api_key
481 DEBUG:galaxy.config:No extra version JSON file detected at /scratch/rico/galaxy/version.json
482 INFO:alembic.runtime.migration:Context impl SQLiteImpl.
483 INFO:alembic.runtime.migration:Will assume non-transactional DDL.
484 INFO:alembic.runtime.migration:Running stamp_revision -> caa7742f7bca
485 DEBUG:alembic.runtime.migration:new branch insert caa7742f7bca
486 INFO:alembic.runtime.migration:Context impl SQLiteImpl.
487 INFO:alembic.runtime.migration:Will assume non-transactional DDL.
488 INFO:alembic.runtime.migration:Running stamp_revision -> d4a650f47a3c
489 DEBUG:alembic.runtime.migration:new branch insert d4a650f47a3c
490 INFO:galaxy.app:Install database targeting Galaxy's database configuration.
491 DEBUG:galaxy.web_stack:GunicornApplicationStack initialized
492 galaxy.jobs DEBUG 2024-04-17 16:40:31,417 [pN:main,p:100449,tN:MainThread] Loading job configuration from /scratch/rico/tmp/tmp12w4107b/job_conf.xml
493 galaxy.jobs DEBUG 2024-04-17 16:40:31,418 [pN:main,p:100449,tN:MainThread] Read job configuration from file: /scratch/rico/tmp/tmp12w4107b/job_conf.xml
494 galaxy.web_stack.handlers INFO 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default
495 galaxy.jobs INFO 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] Job handler assignment methods set to: db-skip-locked
496 galaxy.web_stack.handlers DEBUG 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] default set to child with id or tag 'planemo_dest'
497 galaxy.jobs DEBUG 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] Done loading job configuration
498 galaxy.security.vault WARNING 2024-04-17 16:40:32,451 [pN:main,p:100449,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml
499 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,495 [pN:main,p:100449,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample
500 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h.
501 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c.
502 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp.
503 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py.
504 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go.
505 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs.
506 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs.
507 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root.
508 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2.
509 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1.
510 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,498 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg.
511 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,499 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp.
512 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile.
513 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite.
514 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier.
515 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db.
516 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db.
517 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db.
518 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db.
519 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile.
520 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db.
521 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db.
522 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state.
523 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db.
524 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability.
525 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff.
526 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf.
527 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1.
528 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2.
529 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1.
530 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary.
531 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt.
532 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli.
533 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam.
534 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai.
535 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam.
536 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam.
537 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam.
538 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam.
539 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram.
540 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed.
541 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph.
542 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict.
543 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6.
544 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12.
545 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed.
546 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len.
547 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa.
548 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6.
549 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd.
550 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet.
551 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat.
552 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed.
553 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig.
554 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb.
555 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint.
556 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv.
557 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv.
558 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular.
559 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack.
560 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index.
561 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index.
562 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta.
563 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data.
564 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz.
565 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary.
566 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy.
567 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json.
568 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson.
569 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json.
570 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn.
571 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai.
572 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta.
573 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg.
574 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq.
575 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger.
576 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa.
577 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger.
578 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina.
579 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc.
580 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland.
581 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti.
582 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack.
583 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff.
584 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3.
585 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif.
586 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip.
587 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot.
588 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf.
589 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz.
590 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5.
591 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool.
592 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib.
593 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom.
594 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad.
595 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5.
596 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json.
597 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace.
598 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool.
599 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool.
600 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm.
601 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model.
602 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html.
603 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html.
604 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,512 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval.
605 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,512 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish.
606 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab.
607 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json.
608 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list.
609 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval.
610 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report.
611 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,911 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp.
612 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,911 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche.
613 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,911 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal.
614 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,912 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr.
615 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,912 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg.
616 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff.
617 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2.
618 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8.
619 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf.
620 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif.
621 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs.
622 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn.
623 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif.
624 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff.
625 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms.
626 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu.
627 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi.
628 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs.
629 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide.
630 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp.
631 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im.
632 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd.
633 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx.
634 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm.
635 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd.
636 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm.
637 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm.
638 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb.
639 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm.
640 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm.
641 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd.
642 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr.
643 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps.
644 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza.
645 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv.
646 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular.
647 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip.
648 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip.
649 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar.
650 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory.
651 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml.
652 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm.
653 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,920 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta.
654 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,920 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d.
655 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,920 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta.
656 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml.
657 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml.
658 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml.
659 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml.
660 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml.
661 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml.
662 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik.
663 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist.
664 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms.
665 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv.
666 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv.
667 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat.
668 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid.
669 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml.
670 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem.
671 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms.
672 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw.
673 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar.
674 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar.
675 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar.
676 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar.
677 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar.
678 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar.
679 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar.
680 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml.
681 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab.
682 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2.
683 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml.
684 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml.
685 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb.
686 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3.
687 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf.
688 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff.
689 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2.
690 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml.
691 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata.
692 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2.
693 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq.
694 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite.
695 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite.
696 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw.
697 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp.
698 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml.
699 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml.
700 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml.
701 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml.
702 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml.
703 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml.
704 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml.
705 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml.
706 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc.
707 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp.
708 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex.
709 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib.
710 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib.
711 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib.
712 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib.
713 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf.
714 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb.
715 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3.
716 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps.
717 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct.
718 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql.
719 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive.
720 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar.
721 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz.
722 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2.
723 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive.
724 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin.
725 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout.
726 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor.
727 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik.
728 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml.
729 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75.
730 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1.
731 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2.
732 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii.
733 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck.
734 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk.
735 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc.
736 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star.
737 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff.
738 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml.
739 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs.
740 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext.
741 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr.
742 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi.
743 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1.
744 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2.
745 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3.
746 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore.
747 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe.
748 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom.
749 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset.
750 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt.
751 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt.
752 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt.
753 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive.
754 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix.
755 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf.
756 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps.
757 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast.
758 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj.
759 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav.
760 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf.
761 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack.
762 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx.
763 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap.
764 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak.
765 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf.
766 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup.
767 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl.
768 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo.
769 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl.
770 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png.
771 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual.
772 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa.
773 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina.
774 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid.
775 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454.
776 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps.
777 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam.
778 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf.
779 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences.
780 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb.
781 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp.
782 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular.
783 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff.
784 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra.
785 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular.
786 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg.
787 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy.
788 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular.
789 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit.
790 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass.
791 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite.
792 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite.
793 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite.
794 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite.
795 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite.
796 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt.
797 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount.
798 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp.
799 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml.
800 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml.
801 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml.
802 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd.
803 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi.
804 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf.
805 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf.
806 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip.
807 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed.
808 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet.
809 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig.
810 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index.
811 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi.
812 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg.
813 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg.
814 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2.
815 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3.
816 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx.
817 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix.
818 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz.
819 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz.
820 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz.
821 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz.
822 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip.
823 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip.
824 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus.
825 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx.
826 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml.
827 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick.
828 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx.
829 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex.
830 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree.
831 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,939 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist.
832 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,941 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch.
833 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno.
834 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca.
835 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset.
836 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped.
837 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe.
838 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg.
839 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep.
840 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist.
841 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped.
842 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed.
843 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno.
844 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe.
845 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase.
846 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics.
847 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest.
848 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix.
849 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls.
850 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb.
851 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json.
852 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json.
853 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,944 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml.
854 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,944 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif.
855 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,945 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples.
856 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,945 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt.
857 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt.
858 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3.
859 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl.
860 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf.
861 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld.
862 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls.
863 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx.
864 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted.
865 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai.
866 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db.
867 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge.
868 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans.
869 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips.
870 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp.
871 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet.
872 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq.
873 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot.
874 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport.
875 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp.
876 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut.
877 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan.
878 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest.
879 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg.
880 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted.
881 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind.
882 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem.
883 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome.
884 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem.
885 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak.
886 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc.
887 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro.
888 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran.
889 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier.
890 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee.
891 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix.
892 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment.
893 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore.
894 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match.
895 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable.
896 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle.
897 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport.
898 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek.
899 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn.
900 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome.
901 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil.
902 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo.
903 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats.
904 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot.
905 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg.
906 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq.
907 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch.
908 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat.
909 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf.
910 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack.
911 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider.
912 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher.
913 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco.
914 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch.
915 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip.
916 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble.
917 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount.
918 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif.
919 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq.
920 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel.
921 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable.
922 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif.
923 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions.
924 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable.
925 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple.
926 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table.
927 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq.
928 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb.
929 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal.
930 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata.
931 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl.
932 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch.
933 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg.
934 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank.
935 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86.
936 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig.
937 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer.
938 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon.
939 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega.
940 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon.
941 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi.
942 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus.
943 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon.
944 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip.
945 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon.
946 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir.
947 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden.
948 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss.
949 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,955 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf.
950 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0.
951 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1.
952 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10.
953 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2.
954 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3.
955 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair.
956 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score.
957 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs.
958 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair.
959 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm.
960 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus.
961 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm.
962 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm.
963 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2.
964 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3.
965 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm.
966 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa.
967 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel.
968 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr.
969 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal.
970 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds.
971 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq.
972 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.
973 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce.
974 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw.
975 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw.
976 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks.
977 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group.
978 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor.
979 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks.
980 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive.
981 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative.
982 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick.
983 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se.
984 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as.
985 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg.
986 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling.
987 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits.
988 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist.
989 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss.
990 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,961 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl.
991 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl.
992 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii.
993 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary.
994 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii.
995 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary.
996 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1.
997 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2.
998 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh.
999 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx.
1000 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi.
1001 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf.
1002 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi.
1003 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol.
1004 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2.
1005 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml.
1006 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps.
1007 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs.
1008 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf.
1009 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar.
1010 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb.
1011 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt.
1012 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr.
1013 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell.
1014 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif.
1015 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz.
1016 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz.
1017 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr.
1018 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd.
1019 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top.
1020 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop.
1021 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp.
1022 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp.
1023 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx.
1024 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg.
1025 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc.
1026 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt.
1027 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr.
1028 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr.
1029 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro.
1030 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd.
1031 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel.
1032 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd.
1033 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz.
1034 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu.
1035 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list.
1036 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund.
1037 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund.
1038 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared.
1039 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund.
1040 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names.
1041 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design.
1042 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary.
1043 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups.
1044 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos.
1045 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align.
1046 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos.
1047 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels.
1048 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr.
1049 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map.
1050 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check.
1051 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report.
1052 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter.
1053 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist.
1054 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre.
1055 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist.
1056 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist.
1057 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist.
1058 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy.
1059 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy.
1060 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy.
1061 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy.
1062 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary.
1063 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq.
1064 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan.
1065 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan.
1066 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan.
1067 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan.
1068 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes.
1069 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow.
1070 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table.
1071 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,159 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore.
1072 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,159 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip.
1073 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,159 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub.
1074 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,160 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml.
1075 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,160 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn.
1076 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,160 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp.
1077 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd.
1078 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb.
1079 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5.
1080 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5.
1081 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5.
1082 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1.
1083 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary.
1084 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1.
1085 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp.
1086 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat.
1087 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts.
1088 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map.
1089 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf.
1090 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped.
1091 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin.
1092 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain.
1093 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map.
1094 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo.
1095 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent.
1096 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam.
1097 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre.
1098 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml.
1099 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp.
1100 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba.
1101 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada.
1102 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates.
1103 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs.
1104 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable.
1105 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques.
1106 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2.
1107 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,165 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt.
1108 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,165 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz.
1109 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav.
1110 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3.
1111 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv.
1112 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4.
1113 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv.
1114 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg.
1115 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid.
1116 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par.
1117 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex.
1118 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata.
1119 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext.
1120 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html.
1121 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5.
1122 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz.
1123 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz.
1124 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz.
1125 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz.
1126 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations.
1127 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml.
1128 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess.
1129 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr.
1130 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points.
1131 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv.
1132 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell.
1133 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh.
1134 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo.
1135 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof.
1136 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov.
1137 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result.
1138 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property.
1139 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model.
1140 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts.
1141 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model.
1142 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample.
1143 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check.
1144 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result.
1145 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep.
1146 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param.
1147 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt.
1148 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil.
1149 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr.
1150 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp.
1151 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents'
1152 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat'
1153 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund'
1154 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu'
1155 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund'
1156 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap'
1157 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix'
1158 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix'
1159 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix'
1160 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos'
1161 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile'
1162 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency'
1163 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask'
1164 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy'
1165 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes'
1166 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii'
1167 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary'
1168 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii'
1169 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary'
1170 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess'
1171 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr'
1172 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh'
1173 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath'
1174 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx'
1175 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf'
1176 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2'
1177 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit'
1178 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite'
1179 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass'
1180 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite'
1181 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW'
1182 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP'
1183 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB'
1184 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite'
1185 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite'
1186 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite'
1187 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite'
1188 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite'
1189 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite'
1190 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite'
1191 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite'
1192 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM'
1193 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool'
1194 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool'
1195 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom'
1196 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata'
1197 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2'
1198 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials'
1199 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5'
1200 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib'
1201 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz'
1202 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz'
1203 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz'
1204 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam'
1205 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted'
1206 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative'
1207 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM'
1208 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff'
1209 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra'
1210 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF'
1211 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA'
1212 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6'
1213 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND'
1214 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet'
1215 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar'
1216 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar'
1217 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar'
1218 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar'
1219 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar'
1220 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar'
1221 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz'
1222 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2'
1223 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive'
1224 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb'
1225 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3'
1226 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive'
1227 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM'
1228 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat'
1229 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr'
1230 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd'
1231 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc'
1232 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt'
1233 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr'
1234 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel'
1235 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx'
1236 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata'
1237 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact'
1238 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization'
1239 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive'
1240 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext'
1241 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus'
1242 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl'
1243 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf'
1244 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml'
1245 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti'
1246 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml'
1247 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi'
1248 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml'
1249 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d'
1250 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta'
1251 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML'
1252 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML'
1253 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML'
1254 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML'
1255 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf'
1256 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2'
1257 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp'
1258 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData'
1259 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML'
1260 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML'
1261 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML'
1262 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab'
1263 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2'
1264 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml'
1265 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML'
1266 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML'
1267 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik'
1268 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList'
1269 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS'
1270 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml'
1271 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML'
1272 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib'
1273 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML'
1274 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW'
1275 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML'
1276 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML'
1277 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML'
1278 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML'
1279 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML'
1280 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML'
1281 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff'
1282 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF'
1283 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML'
1284 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml'
1285 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT'
1286 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle'
1287 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples'
1288 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld'
1289 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf'
1290 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav'
1291 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp'
1292 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg'
1293 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta'
1294 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD'
1295 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454'
1296 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF'
1297 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB'
1298 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell'
1299 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF'
1300 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ'
1301 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ'
1302 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2'
1303 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI'
1304 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS'
1305 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR'
1306 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO'
1307 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip'
1308 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta'
1309 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger'
1310 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger'
1311 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq'
1312 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle'
1313 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html'
1314 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf'
1315 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt'
1316 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank'
1317 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed'
1318 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack'
1319 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf'
1320 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff'
1321 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3'
1322 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup'
1323 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl'
1324 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf'
1325 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval'
1326 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam'
1327 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick'
1328 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus'
1329 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree'
1330 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo'
1331 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff'
1332 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb'
1333 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1'
1334 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson'
1335 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson'
1336 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult'
1337 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts'
1338 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json'
1339 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix'
1340 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn'
1341 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap'
1342 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD'
1343 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix'
1344 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket'
1345 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP'
1346 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable'
1347 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV'
1348 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary'
1349 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats'
1350 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV'
1351 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket'
1352 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2'
1353 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3'
1354 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0'
1355 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa'
1356 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM'
1357 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm'
1358 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel'
1359 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr'
1360 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal'
1361 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData'
1362 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS'
1363 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014'
1364 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg'
1365 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png'
1366 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff'
1367 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff'
1368 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp'
1369 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif'
1370 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im'
1371 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd'
1372 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx'
1373 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm'
1374 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd'
1375 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm'
1376 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb'
1377 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm'
1378 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm'
1379 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm'
1380 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps'
1381 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast'
1382 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck'
1383 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk'
1384 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1'
1385 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2'
1386 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star'
1387 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav'
1388 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv'
1389 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3'
1390 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4'
1391 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv'
1392 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg'
1393 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid'
1394 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF'
1395 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep'
1396 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult'
1397 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity'
1398 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param'
1399 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml'
1400 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph'
1401 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph'
1402 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet'
1403 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags'
1404 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset'
1405 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels'
1406 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip'
1407 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty'
1408 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel'
1409 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel'
1410 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample'
1411 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck'
1412 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample].
1413 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla']
1414 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225']
1415 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt
1416 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt
1417 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample].
1418 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample
1419 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample].
1420 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,192 [pN:main,p:100449,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample
1421 galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-04-17 16:40:33,192 [pN:main,p:100449,tN:MainThread] Loading references to tool sheds from /scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml
1422 galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-04-17 16:40:33,192 [pN:main,p:100449,tN:MainThread] Loaded reference to tool shed: Target Shed
1423 galaxy.queue_worker INFO 2024-04-17 16:40:33,193 [pN:main,p:100449,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite?isolation_level=IMMEDIATE
1424 galaxy.visualization.genomes ERROR 2024-04-17 16:40:33,209 [pN:main,p:100449,tN:MainThread] Error reading twobit.loc
1425 Traceback (most recent call last):
1426 File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 218, in reload_genomes
1427 with open(twobit_path) as f:
1428 FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc'
1429 galaxy.util WARNING 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities
1430 galaxy.tools WARNING 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] The default shed tool config file (/scratch/rico/tmp/tmp12w4107b/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
1431 galaxy.tool_util.toolbox.base INFO 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] Parsing the tool configuration /scratch/rico/tmp/tmp12w4107b/tool_conf.xml
1432 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] Tool path for tool configuration /scratch/rico/tmp/tmp12w4107b/tool_conf.xml is None
1433 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,261 [pN:main,p:100449,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel..
1434 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Loaded tool id: segalign, version: 0.1.2.1+galaxy0 into tool panel..
1435 galaxy.tools WARNING 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] The default shed tool config file (/scratch/rico/tmp/tmp12w4107b/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
1436 galaxy.tool_util.toolbox.base INFO 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Parsing the tool configuration /scratch/rico/tmp/tmp12w4107b/shed_tools_conf.xml
1437 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Tool path for shed tool configuration /scratch/rico/tmp/tmp12w4107b/shed_tools_conf.xml is /scratch/rico/tmp/tmp12w4107b/shed_tools
1438 galaxy.tools WARNING 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] The default shed tool config file (/scratch/rico/tmp/tmp12w4107b/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
1439 galaxy.tool_util.toolbox.base INFO 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Parsing the tool configuration /scratch/rico/tmp/tmp12w4107b/empty_tool_conf.xml
1440 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Tool path for tool configuration /scratch/rico/tmp/tmp12w4107b/empty_tool_conf.xml is None
1441 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Reading tools from config files finished (18.841 ms)
1442 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,272 [pN:main,p:100449,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel..
1443 galaxy.tool_util.toolbox.views.edam DEBUG 2024-04-17 16:40:33,273 [pN:main,p:100449,tN:MainThread] Loading EDAM tool panel finished (1.648 ms)
1444 galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,274 [pN:main,p:100449,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel..
1445 galaxy.tool_util.toolbox.views.edam DEBUG 2024-04-17 16:40:33,274 [pN:main,p:100449,tN:MainThread] Loading EDAM tool panel finished (1.272 ms)
1446 galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-04-17 16:40:33,274 [pN:main,p:100449,tN:MainThread] Writing integrated tool panel config file to '/scratch/rico/tmp/tmp12w4107b/integrated_tool_panel_conf.xml'
1447 galaxy.util ERROR 2024-04-17 16:40:33,970 [pN:main,p:100449,tN:MainThread] Error parsing file /scratch/rico/tmp/tmp12w4107b
1448 Traceback (most recent call last):
1449 File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 309, in parse_xml
1450 tree = etree.parse(str(fname), parser=parser)
1451 File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse
1452 File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument
1453 File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL
1454 File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile
1455 File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile
1456 File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc
1457 File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult
1458 File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError
1459 File "/scratch/rico/tmp/tmp12w4107b", line 1
1460 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1
1461 galaxy.tools.data_manager.manager ERROR 2024-04-17 16:40:33,971 [pN:main,p:100449,tN:MainThread] There was an error parsing your Data Manager config file "/scratch/rico/tmp/tmp12w4107b": Document is empty, line 1, column 1 (tmp12w4107b, line 1)
1462 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,973 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False.
1463 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,974 [pN:main,p:100449,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False.
1464 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,975 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes".
1465 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,976 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False.
1466 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,976 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False.
1467 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,976 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio".
1468 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,977 [pN:main,p:100449,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False.
1469 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,977 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False.
1470 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,978 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False.
1471 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,978 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False.
1472 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,978 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False.
1473 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,979 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False.
1474 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,979 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False.
1475 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,980 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False.
1476 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,980 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display".
1477 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,980 [pN:main,p:100449,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False.
1478 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,981 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes".
1479 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,981 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True.
1480 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,982 [pN:main,p:100449,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True.
1481 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,982 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes".
1482 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,982 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True.
1483 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,983 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False.
1484 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,984 [pN:main,p:100449,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True.
1485 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,985 [pN:main,p:100449,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True.
1486 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,985 [pN:main,p:100449,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True.
1487 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes".
1488 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True.
1489 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False.
1490 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display".
1491 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False.
1492 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display".
1493 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False.
1494 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False.
1495 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,988 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False.
1496 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes".
1497 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False.
1498 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True.
1499 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio".
1500 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False.
1501 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False.
1502 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,990 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes".
1503 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,990 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False.
1504 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes".
1505 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False.
1506 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display".
1507 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False.
1508 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display".
1509 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False.
1510 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display".
1511 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False.
1512 galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display".
1513 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False.
1514 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False.
1515 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed'
1516 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed'
1517 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed'
1518 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed'
1519 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph'
1520 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph'
1521 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph'
1522 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph'
1523 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict'
1524 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict'
1525 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict'
1526 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict'
1527 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6'
1528 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6'
1529 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6'
1530 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6'
1531 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12'
1532 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12'
1533 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12'
1534 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12'
1535 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed'
1536 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed'
1537 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed'
1538 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed'
1539 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint'
1540 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint'
1541 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint'
1542 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint'
1543 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz'
1544 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3'
1545 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3'
1546 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz'
1547 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz'
1548 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2'
1549 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2'
1550 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf'
1551 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf'
1552 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak'
1553 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak'
1554 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak'
1555 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak'
1556 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences'
1557 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz'
1558 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz'
1559 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz'
1560 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz'
1561 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz'
1562 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz'
1563 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz'
1564 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz'
1565 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz'
1566 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz'
1567 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz'
1568 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz'
1569 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz'
1570 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz'
1571 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz'
1572 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz'
1573 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,996 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align'
1574 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,998 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1575 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,999 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1576 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,000 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1577 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,001 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1578 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,002 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1579 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,003 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1580 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,003 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0
1581 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,004 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0
1582 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,005 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam
1583 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,005 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0
1584 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,006 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam
1585 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,007 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam
1586 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,008 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0
1587 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,008 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0
1588 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,010 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0
1589 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,011 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0
1590 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,011 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0
1591 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,012 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0
1592 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,013 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig
1593 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,013 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount
1594 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,014 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv
1595 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,016 [pN:main,p:100449,tN:MainThread] Loaded converter: bigwigtowig
1596 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,017 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0
1597 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,018 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0
1598 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,018 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0
1599 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,019 [pN:main,p:100449,tN:MainThread] Loaded converter: csv_to_tabular
1600 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,020 [pN:main,p:100449,tN:MainThread] Loaded converter: tabular_to_csv
1601 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,021 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular
1602 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,021 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index
1603 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,022 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index
1604 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,023 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit
1605 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,023 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len
1606 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,024 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai
1607 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,025 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1608 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,026 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1609 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,026 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0
1610 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,027 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1611 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,028 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1612 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,029 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed
1613 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,030 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0
1614 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,031 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1615 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,031 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1616 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,032 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed
1617 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,033 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0
1618 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,034 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1619 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,034 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1620 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,035 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed
1621 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,036 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0
1622 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,037 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1623 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,038 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1624 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,038 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed
1625 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,039 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0
1626 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,040 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1627 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,041 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1628 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,042 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed
1629 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,042 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0
1630 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,043 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0
1631 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,044 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0
1632 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,044 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0
1633 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,046 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0
1634 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,046 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0
1635 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,048 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1636 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,049 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1637 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,050 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed
1638 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,051 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0
1639 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,051 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0
1640 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,052 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0
1641 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,053 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0
1642 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,053 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0
1643 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,054 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0
1644 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,055 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0
1645 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,056 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0
1646 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,057 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0
1647 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,058 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6
1648 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,058 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory
1649 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,059 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1650 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,060 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1651 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,061 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1652 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,062 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1653 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,063 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1654 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,064 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1655 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,064 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0
1656 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,065 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0
1657 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,066 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0
1658 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,067 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0
1659 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,068 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0
1660 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,069 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0
1661 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,070 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0
1662 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,071 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam
1663 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,072 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam
1664 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,073 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam
1665 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,073 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0
1666 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,074 [pN:main,p:100449,tN:MainThread] Loaded converter: tabular_to_dbnsfp
1667 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,075 [pN:main,p:100449,tN:MainThread] Loaded converter: tabular_to_csv
1668 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,076 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1669 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,076 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1670 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,078 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0
1671 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,079 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0
1672 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,079 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0
1673 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,080 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0
1674 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,081 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1675 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,082 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf
1676 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,083 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf
1677 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,084 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig
1678 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,084 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0
1679 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,085 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0
1680 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,086 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1681 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,086 [pN:main,p:100449,tN:MainThread] Loaded converter: lped2fpedconvert
1682 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,087 [pN:main,p:100449,tN:MainThread] Loaded converter: lped2pbedconvert
1683 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,088 [pN:main,p:100449,tN:MainThread] Loaded converter: pbed2lpedconvert
1684 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,089 [pN:main,p:100449,tN:MainThread] Loaded converter: pbed2ldindepconvert
1685 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,090 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz
1686 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,090 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed
1687 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,091 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_biom
1688 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,092 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_biom
1689 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,093 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1690 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,094 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1691 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,096 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1692 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,096 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL
1693 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,097 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1694 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,098 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles
1695 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,099 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1696 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,100 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1697 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,101 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1698 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,102 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1699 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,104 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1700 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,105 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1701 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,105 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol
1702 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,106 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1703 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,107 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1704 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,108 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1705 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,110 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1706 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,111 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1707 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,112 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1708 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,113 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1709 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,114 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1710 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,115 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1711 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,116 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1712 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,116 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol
1713 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,118 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1714 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,118 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles
1715 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,119 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1716 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,121 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1717 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,122 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules
1718 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,122 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0
1719 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,124 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert
1720 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,125 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert
1721 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,125 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert
1722 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,126 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert
1723 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,127 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert
1724 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,128 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert
1725 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,129 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0
1726 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,129 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony
1727 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,130 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore
1728 galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,131 [pN:main,p:100449,tN:MainThread] Loaded external metadata tool: __SET_METADATA__
1729 galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,133 [pN:main,p:100449,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__
1730 galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,133 [pN:main,p:100449,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__
1731 galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,134 [pN:main,p:100449,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__
1732 galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,135 [pN:main,p:100449,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__
1733 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,136 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot
1734 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,137 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus
1735 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,138 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image
1736 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,139 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1737 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,139 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz
1738 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,140 [pN:main,p:100449,tN:MainThread] Visualizations plugin disabled: Circster. Skipping...
1739 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,140 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1740 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,140 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: csg
1741 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,141 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape
1742 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,142 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna
1743 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,143 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: editor
1744 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,144 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: example
1745 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,145 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1746 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,145 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz
1747 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,147 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster
1748 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,149 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default
1749 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1750 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace
1751 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1752 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision
1753 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,153 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar
1754 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,154 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box
1755 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,156 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram
1756 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,158 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line
1757 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,160 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter
1758 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,160 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1759 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player
1760 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1761 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player
1762 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: msa
1763 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,162 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1764 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,163 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp
1765 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,164 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl
1766 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,165 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nora
1767 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,167 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar
1768 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,169 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked
1769 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,171 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram
1770 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,173 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete
1771 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,175 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal
1772 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,176 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked
1773 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,178 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line
1774 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,180 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus
1775 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,182 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie
1776 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,183 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter
1777 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,185 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea
1778 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,187 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full
1779 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,189 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream
1780 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,190 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers
1781 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,191 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon
1782 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,192 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas
1783 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,193 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz
1784 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,194 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: pv
1785 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,195 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot
1786 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,195 [pN:main,p:100449,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping...
1787 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster
1788 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs
1789 galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead
1790 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept
1791 galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,197 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: venn
1792 galaxy.tours._impl INFO 2024-04-17 16:40:34,220 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.galaxy_ui'
1793 galaxy.tours._impl INFO 2024-04-17 16:40:34,237 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.deferred'
1794 galaxy.tours._impl INFO 2024-04-17 16:40:34,250 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.history'
1795 galaxy.tours._impl INFO 2024-04-17 16:40:34,261 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.windows'
1796 galaxy.workflow.scheduling_manager INFO 2024-04-17 16:40:34,267 [pN:main,p:100449,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler.
1797 galaxy.web_stack.handlers INFO 2024-04-17 16:40:34,267 [pN:main,p:100449,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default
1798 galaxy.workflow.scheduling_manager DEBUG 2024-04-17 16:40:34,267 [pN:main,p:100449,tN:MainThread] Starting workflow schedulers
1799 galaxy.app INFO 2024-04-17 16:40:34,269 [pN:main,p:100449,tN:MainThread] Galaxy app startup finished (5057.528 ms)
1800 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,347 [pN:main,p:100449,tN:MainThread] Enabling 'user' controller, class: User
1801 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,348 [pN:main,p:100449,tN:MainThread] Enabling 'data_manager' controller, class: DataManager
1802 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,349 [pN:main,p:100449,tN:MainThread] Enabling 'async' controller, class: ASync
1803 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,350 [pN:main,p:100449,tN:MainThread] Enabling 'tag' controller, class: TagsController
1804 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,358 [pN:main,p:100449,tN:MainThread] Enabling 'page' controller, class: PageController
1805 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,359 [pN:main,p:100449,tN:MainThread] Enabling 'root' controller, class: RootController
1806 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,359 [pN:main,p:100449,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner
1807 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,360 [pN:main,p:100449,tN:MainThread] Enabling 'error' controller, class: Error
1808 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,360 [pN:main,p:100449,tN:MainThread] Enabling 'forms' controller, class: Forms
1809 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,375 [pN:main,p:100449,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy
1810 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,376 [pN:main,p:100449,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed
1811 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,377 [pN:main,p:100449,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController
1812 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,377 [pN:main,p:100449,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic
1813 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,511 [pN:main,p:100449,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher
1814 galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,511 [pN:main,p:100449,tN:MainThread] Enabling 'authnz' controller, class: OIDC
1815 galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,134 [pN:main,p:100449,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController
1816 galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,138 [pN:main,p:100449,tN:MainThread] Enabling 'history' controller, class: HistoryController
1817 galaxy.config DEBUG 2024-04-17 16:40:35,174 [pN:main,p:100449,tN:MainThread] Configuration directory is /scratch/rico/tmp/tmp12w4107b
1818 galaxy.config DEBUG 2024-04-17 16:40:35,175 [pN:main,p:100449,tN:MainThread] Data directory is /scratch/rico/galaxy/database
1819 galaxy.config DEBUG 2024-04-17 16:40:35,175 [pN:main,p:100449,tN:MainThread] Managed config directory is /scratch/rico/tmp/tmp12w4107b
1820 galaxy.config WARNING 2024-04-17 16:40:35,203 [pN:main,p:100449,tN:MainThread] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key
1821 galaxy.config DEBUG 2024-04-17 16:40:35,204 [pN:main,p:100449,tN:MainThread] No extra version JSON file detected at /scratch/rico/galaxy/version.json
1822 galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,231 [pN:main,p:100449,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface
1823 galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,232 [pN:main,p:100449,tN:MainThread] Enabling 'userskeys' controller, class: User
1824 galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,232 [pN:main,p:100449,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy
1825 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,477 [pN:main,p:100449,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController
1826 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,500 [pN:main,p:100449,tN:MainThread] Enabling 'jobs' API controller, class: JobController
1827 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,602 [pN:main,p:100449,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController
1828 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,725 [pN:main,p:100449,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController
1829 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,740 [pN:main,p:100449,tN:MainThread] Enabling 'tools' API controller, class: ToolsController
1830 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,885 [pN:main,p:100449,tN:MainThread] Enabling 'groups' API controller, class: GroupAPIController
1831 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,886 [pN:main,p:100449,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController
1832 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,888 [pN:main,p:100449,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController
1833 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,888 [pN:main,p:100449,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController
1834 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,889 [pN:main,p:100449,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController
1835 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,890 [pN:main,p:100449,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController
1836 galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,891 [pN:main,p:100449,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController
1837 galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,060 [pN:main,p:100449,tN:MainThread] Enabling 'cloud' API controller, class: CloudController
1838 galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,323 [pN:main,p:100449,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController
1839 galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,323 [pN:main,p:100449,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController
1840 galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,324 [pN:main,p:100449,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController
1841 galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,338 [pN:main,p:100449,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController
1842 galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,137 [pN:main,p:100449,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController
1843 galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,199 [pN:main,p:100449,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController
1844 galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,200 [pN:main,p:100449,tN:MainThread] Enabling 'display_applications' API controller, class: DisplayApplicationsController
1845 galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,601 [pN:main,p:100449,tN:MainThread] Enabling 'search' API controller, class: SearchController
1846 galaxy.web.framework.base DEBUG 2024-04-17 16:40:40,109 [pN:main,p:100449,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController
1847 galaxy.web.framework.base DEBUG 2024-04-17 16:40:40,439 [pN:main,p:100449,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController
1848 galaxy.web.framework.base DEBUG 2024-04-17 16:40:40,439 [pN:main,p:100449,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController
1849 galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,828 [pN:main,p:100449,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController
1850 galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,828 [pN:main,p:100449,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController
1851 galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,828 [pN:main,p:100449,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController
1852 galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,909 [pN:main,p:100449,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController
1853 galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,909 [pN:main,p:100449,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController
1854 galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,909 [pN:main,p:100449,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController
1855 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,047 [pN:main,p:100449,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController
1856 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,081 [pN:main,p:100449,tN:MainThread] Enabling 'users' API controller, class: UserAPIController
1857 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,082 [pN:main,p:100449,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController
1858 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,082 [pN:main,p:100449,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController
1859 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,083 [pN:main,p:100449,tN:MainThread] Enabling 'history_content_tags' API controller, class: HistoryContentTagsController
1860 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,083 [pN:main,p:100449,tN:MainThread] Enabling 'history_tags' API controller, class: HistoryTagsController
1861 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,083 [pN:main,p:100449,tN:MainThread] Enabling 'workflow_tags' API controller, class: WorkflowTagsController
1862 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,092 [pN:main,p:100449,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController
1863 galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,455 [pN:main,p:100449,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController
1864 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,790 [pN:main,p:100449,tN:MainThread] Enabling 'paste.httpexceptions' middleware
1865 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,791 [pN:main,p:100449,tN:MainThread] Enabling 'RemoteUser' middleware
1866 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'RecursiveMiddleware' middleware
1867 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'ErrorMiddleware' middleware
1868 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'TusMiddleware' middleware
1869 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware
1870 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'RequestIDMiddleware' middleware
1871 galaxy.webapps.util DEBUG 2024-04-17 16:40:42,818 [pN:main,p:100449,tN:MainThread] Enabling 'build_url_map' middleware
1872 galaxy.webapps.galaxy.buildapp DEBUG 2024-04-17 16:40:42,818 [pN:main,p:100449,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140179676497728)> is alive.
1873 /scratch/rico/galaxy/lib/galaxy/webapps/openapi/utils.py:463: UserWarning: Merging operation with id fetch_json_api_tools_fetch_post with operation with id fetch_form_api_tools_fetch_post.
1874 warnings.warn(message)
1875 [2024-04-17 16:40:45 -0400] [100449] [INFO] Starting gunicorn 20.1.0
1876 [2024-04-17 16:40:45 -0400] [100449] [INFO] Listening at: http://127.0.0.1:9090 (100449)
1877 [2024-04-17 16:40:45 -0400] [100449] [INFO] Using worker: galaxy.webapps.galaxy.workers.Worker
1878 [2024-04-17 16:40:45 -0400] [100659] [INFO] Booting worker with pid: 100659
1879 galaxy.web_stack DEBUG 2024-04-17 16:40:45,637 [pN:main.1,p:100659,tN:Thread-2] server_name set to: main.1
1880 galaxy.jobs.manager DEBUG 2024-04-17 16:40:45,638 [pN:main.1,p:100659,tN:Thread-2] Initializing job handler
1881 galaxy.jobs INFO 2024-04-17 16:40:45,639 [pN:main.1,p:100659,tN:Thread-2] Handler 'main.1' will load all configured runner plugins
1882 galaxy.jobs.runners.state_handler_factory DEBUG 2024-04-17 16:40:45,662 [pN:main.1,p:100659,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit
1883 galaxy.jobs DEBUG 2024-04-17 16:40:45,662 [pN:main.1,p:100659,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'planemo_runner'
1884 galaxy.jobs.handler DEBUG 2024-04-17 16:40:45,663 [pN:main.1,p:100659,tN:Thread-2] Loaded job runners plugins: planemo_runner
1885 galaxy.jobs.handler INFO 2024-04-17 16:40:45,663 [pN:main.1,p:100659,tN:Thread-2] job handler stop queue started
1886 galaxy.jobs.runners DEBUG 2024-04-17 16:40:45,664 [pN:main.1,p:100659,tN:Thread-2] Starting 4 LocalRunner workers
1887 galaxy.jobs.handler DEBUG 2024-04-17 16:40:45,665 [pN:main.1,p:100659,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1
1888 galaxy.jobs.handler INFO 2024-04-17 16:40:47,126 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s):
1889 galaxy.jobs.handler INFO 2024-04-17 16:40:47,126 [pN:main.1,p:100659,tN:Thread-2] job handler queue started
1890 galaxy.jobs.handler INFO 2024-04-17 16:40:47,132 [pN:main.1,p:100659,tN:Thread-2] job handler stop queue started
1891 galaxy.jobs.handler INFO 2024-04-17 16:40:47,135 [pN:main.1,p:100659,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): _default_, None
1892 galaxy.queue_worker INFO 2024-04-17 16:40:47,144 [pN:main.1,p:100659,tN:Thread-2] Binding and starting galaxy control worker for main.1
1893 galaxy.queue_worker INFO 2024-04-17 16:40:47,154 [pN:main.1,p:100659,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1.
1894 [2024-04-17 16:40:47 -0400] [100659] [INFO] Started server process [100659]
1895 [2024-04-17 16:40:47 -0400] [100659] [INFO] Waiting for application startup.
1896 [2024-04-17 16:40:47 -0400] [100659] [INFO] Application startup complete.
1897 galaxy.model.database_heartbeat DEBUG 2024-04-17 16:40:47,249 [pN:main.1,p:100659,tN:database_heartbeart_main.1.thread] main.1 is config watcher
1898 galaxy.web_stack INFO 2024-04-17 16:40:47,281 [pN:main.1,p:100659,tN:Thread-2] Galaxy server instance 'main.1' is running
1899 serving on http://127.0.0.1:9090
1900 galaxy.queue_worker INFO 2024-04-17 16:40:47,293 [pN:main.1,p:100659,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now.
1901 galaxy.tools.search DEBUG 2024-04-17 16:40:47,293 [pN:main.1,p:100659,tN:Thread-1] Starting to build toolbox index of panel default.
1902 galaxy.tools.search DEBUG 2024-04-17 16:40:47,302 [pN:main.1,p:100659,tN:Thread-1] Toolbox index of panel default finished (8.935 ms)
1903 galaxy.tools.search DEBUG 2024-04-17 16:40:47,303 [pN:main.1,p:100659,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations.
1904 galaxy.tools.search DEBUG 2024-04-17 16:40:47,306 [pN:main.1,p:100659,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.617 ms)
1905 galaxy.tools.search DEBUG 2024-04-17 16:40:47,306 [pN:main.1,p:100659,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics.
1906 galaxy.tools.search DEBUG 2024-04-17 16:40:47,310 [pN:main.1,p:100659,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.674 ms)
1907 galaxy.webapps.base.webapp DEBUG 2024-04-17 16:41:35,014 [pN:main.1,p:100659,tN:WSGI_0] Received invalid session key '{secure_id}', setting a new session key
1908 /scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:740: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
1909 self.sa_session.query(self.app.model.User)
1910 /scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:329: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
1911 if config.use_remote_user and self.galaxy_session.user.deleted:
1912 uvicorn.access INFO 2024-04-17 16:41:35,220 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET / HTTP/1.1" 200
1913 uvicorn.access INFO 2024-04-17 16:41:35,236 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /static/dist/base.css?v=1713286767000 HTTP/1.1" 200
1914 uvicorn.access INFO 2024-04-17 16:41:35,259 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /static/dist/analysis.bundled.js?v=1713286767000 HTTP/1.1" 200
1915 uvicorn.access INFO 2024-04-17 16:41:35,717 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/webhooks HTTP/1.1" 200
1916 uvicorn.access INFO 2024-04-17 16:41:35,771 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /api/entry_points?running=true HTTP/1.1" 200
1917 uvicorn.access INFO 2024-04-17 16:41:35,781 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/users/current HTTP/1.1" 200
1918 uvicorn.access INFO 2024-04-17 16:41:35,809 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40036 - "GET /welcome HTTP/1.1" 302
1919 uvicorn.access INFO 2024-04-17 16:41:35,834 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40050 - "GET /api/webhooks HTTP/1.1" 200
1920 uvicorn.access INFO 2024-04-17 16:41:35,846 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /api/tools?in_panel=true&view=default HTTP/1.1" 200
1921 uvicorn.access INFO 2024-04-17 16:41:35,862 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40026 - "GET /api/configuration HTTP/1.1" 200
1922 uvicorn.access INFO 2024-04-17 16:41:35,887 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/histories?view=summary HTTP/1.1" 200
1923 /scratch/rico/galaxy/lib/galaxy/model/__init__.py:2895: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
1924 rval = db_session.query(
1925 uvicorn.access INFO 2024-04-17 16:41:35,939 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40064 - "GET /history/current_history_json HTTP/1.1" 200
1926 /scratch/rico/galaxy/lib/galaxy/managers/history_contents.py:259: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
1927 contents_results = self._union_of_contents_query(container, **kwargs).all()
1928 uvicorn.access INFO 2024-04-17 16:41:36,075 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40064 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:41:35.459Z HTTP/1.1" 200
1929 uvicorn.access INFO 2024-04-17 16:41:36,082 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /history/current_history_json HTTP/1.1" 200
1930 uvicorn.access INFO 2024-04-17 16:41:36,178 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /api/datatypes?extension_only=False HTTP/1.1" 200
1931 uvicorn.access INFO 2024-04-17 16:41:36,179 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40064 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200
1932 uvicorn.access INFO 2024-04-17 16:41:36,284 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40050 - "GET /api/genomes HTTP/1.1" 200
1933 uvicorn.access INFO 2024-04-17 16:41:36,313 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/histories/d23b2492b9db9f5f?view=summary&keys=size,contents_active,user_id HTTP/1.1" 200
1934 uvicorn.access INFO 2024-04-17 16:41:36,318 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40026 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200
1935 uvicorn.access INFO 2024-04-17 16:41:39,142 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40080 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1936 uvicorn.access INFO 2024-04-17 16:41:42,174 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40092 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1937 uvicorn.access INFO 2024-04-17 16:41:45,215 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40096 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1938 uvicorn.access INFO 2024-04-17 16:41:45,771 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40096 - "GET /api/entry_points?running=true HTTP/1.1" 200
1939 uvicorn.access INFO 2024-04-17 16:41:48,250 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51078 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1940 uvicorn.access INFO 2024-04-17 16:41:51,288 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51082 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1941 uvicorn.access INFO 2024-04-17 16:41:54,323 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51084 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1942 uvicorn.access INFO 2024-04-17 16:41:55,773 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51084 - "GET /api/entry_points?running=true HTTP/1.1" 200
1943 uvicorn.access INFO 2024-04-17 16:41:57,358 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51084 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1944 uvicorn.access INFO 2024-04-17 16:42:00,393 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:52308 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1945 uvicorn.access INFO 2024-04-17 16:42:03,436 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:52322 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1946 uvicorn.access INFO 2024-04-17 16:42:05,772 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35856 - "GET /api/entry_points?running=true HTTP/1.1" 200
1947 uvicorn.access INFO 2024-04-17 16:42:06,471 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35856 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1948 uvicorn.access INFO 2024-04-17 16:42:09,506 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35870 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1949 uvicorn.access INFO 2024-04-17 16:42:12,549 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35880 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1950 uvicorn.access INFO 2024-04-17 16:42:15,583 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35886 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1951 uvicorn.access INFO 2024-04-17 16:42:15,771 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35886 - "GET /api/entry_points?running=true HTTP/1.1" 200
1952 uvicorn.access INFO 2024-04-17 16:42:18,618 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42486 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1953 uvicorn.access INFO 2024-04-17 16:42:21,651 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42494 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1954 uvicorn.access INFO 2024-04-17 16:42:24,686 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42498 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1955 uvicorn.access INFO 2024-04-17 16:42:25,775 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42498 - "GET /api/entry_points?running=true HTTP/1.1" 200
1956 uvicorn.access INFO 2024-04-17 16:42:27,722 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42498 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1957 uvicorn.access INFO 2024-04-17 16:42:30,758 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35394 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1958 uvicorn.access INFO 2024-04-17 16:42:33,791 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35400 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1959 uvicorn.access INFO 2024-04-17 16:42:35,775 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35400 - "GET /api/entry_points?running=true HTTP/1.1" 200
1960 uvicorn.access INFO 2024-04-17 16:42:36,826 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35400 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1961 uvicorn.access INFO 2024-04-17 16:42:39,858 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53056 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1962 uvicorn.access INFO 2024-04-17 16:42:42,895 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53072 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1963 galaxy.files.uris DEBUG 2024-04-17 16:42:45,545 [pN:main.1,p:100659,tN:MainThread] parsed url, port: hgdownload.soe.ucsc.edu : None
1964 galaxy.files.uris DEBUG 2024-04-17 16:42:45,546 [pN:main.1,p:100659,tN:MainThread] parsed url, port: hgdownload.soe.ucsc.edu : None
1965 galaxy.tools INFO 2024-04-17 16:42:45,559 [pN:main.1,p:100659,tN:MainThread] Validated and populated state for tool request (0.162 ms)
1966 galaxy.tools.actions.upload DEBUG 2024-04-17 16:42:45,578 [pN:main.1,p:100659,tN:MainThread] Persisted uploads (0.012 ms)
1967 galaxy.tools.actions.upload DEBUG 2024-04-17 16:42:45,750 [pN:main.1,p:100659,tN:MainThread] Created upload job (15.530 ms)
1968 galaxy.tools.execute DEBUG 2024-04-17 16:42:45,750 [pN:main.1,p:100659,tN:MainThread] Tool __DATA_FETCH__ created job None (172.521 ms)
1969 galaxy.web_stack.handlers INFO 2024-04-17 16:42:45,786 [pN:main.1,p:100659,tN:MainThread] (Job[id=1,tool_id=__DATA_FETCH__]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method
1970 galaxy.tools.execute DEBUG 2024-04-17 16:42:45,797 [pN:main.1,p:100659,tN:MainThread] Created 1 job(s) for tool __DATA_FETCH__ request (237.858 ms)
1971 uvicorn.access INFO 2024-04-17 16:42:45,844 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "POST /api/tools/fetch HTTP/1.1" 200
1972 uvicorn.access INFO 2024-04-17 16:42:45,888 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59400 - "GET /api/entry_points?running=true HTTP/1.1" 200
1973 uvicorn.access INFO 2024-04-17 16:42:45,906 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200
1974 uvicorn.access INFO 2024-04-17 16:42:45,970 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:41:35.946Z HTTP/1.1" 200
1975 uvicorn.access INFO 2024-04-17 16:42:46,022 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200
1976 uvicorn.access INFO 2024-04-17 16:42:46,063 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59400 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200
1977 galaxy.jobs.mapper DEBUG 2024-04-17 16:42:46,325 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: planemo_dest
1978 galaxy.jobs.handler DEBUG 2024-04-17 16:42:46,347 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to planemo_runner runner
1979 galaxy.jobs DEBUG 2024-04-17 16:42:46,382 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: planemo_dest)
1980 galaxy.jobs DEBUG 2024-04-17 16:42:46,407 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1
1981 galaxy.jobs.runners DEBUG 2024-04-17 16:42:46,415 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [1] queued (67.323 ms)
1982 galaxy.jobs.handler INFO 2024-04-17 16:42:46,424 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched
1983 galaxy.jobs DEBUG 2024-04-17 16:42:46,672 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (217.489 ms)
1984 galaxy.jobs.command_factory INFO 2024-04-17 16:42:46,695 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/lib/galaxy/tools/data_fetch.py' --galaxy-root '/scratch/rico/galaxy' --datatypes-registry '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/registry.xml' --request-version '1' --request '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/configs/tmpsgrlxr_o']
1985 galaxy.jobs.runners DEBUG 2024-04-17 16:42:46,842 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs
1986 if [ -d _working ]; then
1987 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs
1988 else
1989 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs
1990 fi
1991 cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/galaxy_1.ec; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1';
1992 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code"
1993 galaxy.jobs.runners.local DEBUG 2024-04-17 16:42:46,863 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (1) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/galaxy_1.sh
1994 uvicorn.access INFO 2024-04-17 16:42:49,080 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59408 - "GET /history/current_history_json?since=2024-04-17T20:42:45.000727 HTTP/1.1" 200
1995 uvicorn.access INFO 2024-04-17 16:42:49,142 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59408 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:42:45.913Z HTTP/1.1" 200
1996 uvicorn.access INFO 2024-04-17 16:42:49,195 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59408 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200
1997 uvicorn.access INFO 2024-04-17 16:42:49,233 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59410 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200
1998 uvicorn.access INFO 2024-04-17 16:42:52,194 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59426 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
1999 uvicorn.access INFO 2024-04-17 16:42:55,228 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59434 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2000 uvicorn.access INFO 2024-04-17 16:42:55,779 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59434 - "GET /api/entry_points?running=true HTTP/1.1" 200
2001 uvicorn.access INFO 2024-04-17 16:42:58,263 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34840 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2002 uvicorn.access INFO 2024-04-17 16:43:01,306 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34844 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2003 uvicorn.access INFO 2024-04-17 16:43:04,343 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34846 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2004 uvicorn.access INFO 2024-04-17 16:43:05,783 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34846 - "GET /api/entry_points?running=true HTTP/1.1" 200
2005 uvicorn.access INFO 2024-04-17 16:43:07,373 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34846 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2006 uvicorn.access INFO 2024-04-17 16:43:10,410 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33714 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2007 uvicorn.access INFO 2024-04-17 16:43:13,443 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33730 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2008 uvicorn.access INFO 2024-04-17 16:43:15,794 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33358 - "GET /api/entry_points?running=true HTTP/1.1" 200
2009 uvicorn.access INFO 2024-04-17 16:43:16,477 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33358 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2010 uvicorn.access INFO 2024-04-17 16:43:19,519 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33374 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2011 uvicorn.access INFO 2024-04-17 16:43:22,560 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33382 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2012 uvicorn.access INFO 2024-04-17 16:43:25,594 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33388 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2013 uvicorn.access INFO 2024-04-17 16:43:25,782 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33388 - "GET /api/entry_points?running=true HTTP/1.1" 200
2014 uvicorn.access INFO 2024-04-17 16:43:28,627 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56312 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2015 uvicorn.access INFO 2024-04-17 16:43:31,663 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56328 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2016 uvicorn.access INFO 2024-04-17 16:43:34,699 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56330 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2017 uvicorn.access INFO 2024-04-17 16:43:35,786 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56330 - "GET /api/entry_points?running=true HTTP/1.1" 200
2018 uvicorn.access INFO 2024-04-17 16:43:37,731 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56330 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2019 uvicorn.access INFO 2024-04-17 16:43:40,766 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33212 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2020 uvicorn.access INFO 2024-04-17 16:43:43,801 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33216 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2021 uvicorn.access INFO 2024-04-17 16:43:45,788 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33216 - "GET /api/entry_points?running=true HTTP/1.1" 200
2022 uvicorn.access INFO 2024-04-17 16:43:46,834 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33216 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2023 uvicorn.access INFO 2024-04-17 16:43:49,870 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44378 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2024 uvicorn.access INFO 2024-04-17 16:43:52,907 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44384 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2025 galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 16:43:54,966 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 100756
2026 galaxy.jobs.runners.local DEBUG 2024-04-17 16:43:54,967 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/galaxy_1.sh
2027 galaxy.jobs DEBUG 2024-04-17 16:43:55,001 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/outputs/dataset_f942d97c-6c27-4ee4-8ad1-bb1227186612.dat to /scratch/rico/tmp/tmp12w4107b/files/f/9/4/dataset_f942d97c-6c27-4ee4-8ad1-bb1227186612.dat
2028 galaxy.jobs DEBUG 2024-04-17 16:43:55,001 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/outputs/dataset_fe981322-ad11-477a-8c4f-623aad83cb29.dat to /scratch/rico/tmp/tmp12w4107b/files/f/e/9/dataset_fe981322-ad11-477a-8c4f-623aad83cb29.dat
2029 galaxy.tool_util.provided_metadata DEBUG 2024-04-17 16:43:55,033 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'hg38.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [{'source_uri': 'https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz'}], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/working/gx_file_streamqer1e837', 'object_id': 1}, {'name': 'mm39.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [{'source_uri': 'https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa.gz'}], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/working/gx_file_streambdx1tghy', 'object_id': 2}]}]}]
2030 uvicorn.access INFO 2024-04-17 16:43:55,803 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42166 - "GET /api/entry_points?running=true HTTP/1.1" 200
2031 uvicorn.access INFO 2024-04-17 16:43:55,939 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42166 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2032 uvicorn.access INFO 2024-04-17 16:43:58,978 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42170 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2033 uvicorn.access INFO 2024-04-17 16:44:02,016 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42176 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2034 uvicorn.access INFO 2024-04-17 16:44:05,063 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42188 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2035 uvicorn.access INFO 2024-04-17 16:44:05,792 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42188 - "GET /api/entry_points?running=true HTTP/1.1" 200
2036 uvicorn.access INFO 2024-04-17 16:44:08,102 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51382 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2037 uvicorn.access INFO 2024-04-17 16:44:11,137 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51388 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2038 uvicorn.access INFO 2024-04-17 16:44:14,172 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51398 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2039 uvicorn.access INFO 2024-04-17 16:44:15,808 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51398 - "GET /api/entry_points?running=true HTTP/1.1" 200
2040 uvicorn.access INFO 2024-04-17 16:44:17,204 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51398 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2041 uvicorn.access INFO 2024-04-17 16:44:20,246 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37780 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2042 uvicorn.access INFO 2024-04-17 16:44:23,288 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37796 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2043 uvicorn.access INFO 2024-04-17 16:44:25,802 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59346 - "GET /api/entry_points?running=true HTTP/1.1" 200
2044 uvicorn.access INFO 2024-04-17 16:44:26,324 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59346 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2045 uvicorn.access INFO 2024-04-17 16:44:29,368 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59358 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2046 uvicorn.access INFO 2024-04-17 16:44:32,403 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59370 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2047 uvicorn.access INFO 2024-04-17 16:44:35,436 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59372 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2048 uvicorn.access INFO 2024-04-17 16:44:35,802 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59372 - "GET /api/entry_points?running=true HTTP/1.1" 200
2049 uvicorn.access INFO 2024-04-17 16:44:38,463 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44694 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2050 uvicorn.access INFO 2024-04-17 16:44:41,501 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44704 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2051 uvicorn.access INFO 2024-04-17 16:44:44,545 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44706 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2052 uvicorn.access INFO 2024-04-17 16:44:45,800 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44706 - "GET /api/entry_points?running=true HTTP/1.1" 200
2053 uvicorn.access INFO 2024-04-17 16:44:47,586 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44706 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2054 uvicorn.access INFO 2024-04-17 16:44:50,623 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43634 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2055 uvicorn.access INFO 2024-04-17 16:44:53,663 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43650 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2056 uvicorn.access INFO 2024-04-17 16:44:55,810 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36894 - "GET /api/entry_points?running=true HTTP/1.1" 200
2057 uvicorn.access INFO 2024-04-17 16:44:56,696 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36894 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2058 uvicorn.access INFO 2024-04-17 16:44:59,744 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36896 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2059 uvicorn.access INFO 2024-04-17 16:45:02,784 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36902 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2060 uvicorn.access INFO 2024-04-17 16:45:05,816 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48862 - "GET /api/entry_points?running=true HTTP/1.1" 200
2061 uvicorn.access INFO 2024-04-17 16:45:05,826 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48874 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2062 uvicorn.access INFO 2024-04-17 16:45:08,859 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48882 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2063 uvicorn.access INFO 2024-04-17 16:45:11,897 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48894 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2064 uvicorn.access INFO 2024-04-17 16:45:14,962 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48898 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2065 uvicorn.access INFO 2024-04-17 16:45:15,805 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48898 - "GET /api/entry_points?running=true HTTP/1.1" 200
2066 uvicorn.access INFO 2024-04-17 16:45:17,999 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39084 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2067 uvicorn.access INFO 2024-04-17 16:45:21,032 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39092 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2068
2069 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
2070 [2024-04-17 16:45:22,308: DEBUG/MainProcess] beat: Synchronizing schedule...
2071 [2024-04-17 16:45:22,309: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2072
2073 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
2074 uvicorn.access INFO 2024-04-17 16:45:24,069 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39094 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2075 uvicorn.access INFO 2024-04-17 16:45:25,805 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39094 - "GET /api/entry_points?running=true HTTP/1.1" 200
2076 uvicorn.access INFO 2024-04-17 16:45:27,103 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39094 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2077 uvicorn.access INFO 2024-04-17 16:45:30,140 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:50906 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2078 uvicorn.access INFO 2024-04-17 16:45:33,179 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:50910 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2079 uvicorn.access INFO 2024-04-17 16:45:35,820 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32770 - "GET /api/entry_points?running=true HTTP/1.1" 200
2080 uvicorn.access INFO 2024-04-17 16:45:36,219 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32770 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2081 uvicorn.access INFO 2024-04-17 16:45:39,259 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32782 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2082 uvicorn.access INFO 2024-04-17 16:45:42,291 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32796 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2083 uvicorn.access INFO 2024-04-17 16:45:45,332 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32808 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2084 uvicorn.access INFO 2024-04-17 16:45:45,814 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32808 - "GET /api/entry_points?running=true HTTP/1.1" 200
2085 uvicorn.access INFO 2024-04-17 16:45:48,369 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49528 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2086 uvicorn.access INFO 2024-04-17 16:45:51,409 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49542 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2087 uvicorn.access INFO 2024-04-17 16:45:54,449 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49548 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2088 uvicorn.access INFO 2024-04-17 16:45:55,810 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49548 - "GET /api/entry_points?running=true HTTP/1.1" 200
2089 uvicorn.access INFO 2024-04-17 16:45:57,484 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49548 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2090 uvicorn.access INFO 2024-04-17 16:46:00,521 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42846 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2091 uvicorn.access INFO 2024-04-17 16:46:03,558 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42852 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2092 uvicorn.access INFO 2024-04-17 16:46:05,812 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51930 - "GET /api/entry_points?running=true HTTP/1.1" 200
2093 uvicorn.access INFO 2024-04-17 16:46:06,594 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51930 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2094 uvicorn.access INFO 2024-04-17 16:46:09,629 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51936 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2095 uvicorn.access INFO 2024-04-17 16:46:12,665 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51944 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2096 galaxy.jobs DEBUG 2024-04-17 16:46:13,804 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (138813.240 ms)
2097 uvicorn.access INFO 2024-04-17 16:46:15,719 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48740 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200
2098 uvicorn.access INFO 2024-04-17 16:46:15,780 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48740 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:42:49.088Z HTTP/1.1" 200
2099 uvicorn.access INFO 2024-04-17 16:46:15,833 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48742 - "GET /api/entry_points?running=true HTTP/1.1" 200
2100 uvicorn.access INFO 2024-04-17 16:46:15,838 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48740 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200
2101 uvicorn.access INFO 2024-04-17 16:46:15,888 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48746 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200
2102 uvicorn.access INFO 2024-04-17 16:46:18,833 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48754 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200
2103 uvicorn.access INFO 2024-04-17 16:46:21,869 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200
2104 uvicorn.access INFO 2024-04-17 16:46:22,229 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48782 - "GET /api/users/current HTTP/1.1" 200
2105 uvicorn.access INFO 2024-04-17 16:46:22,255 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48776 - "GET /api/configuration HTTP/1.1" 200
2106 uvicorn.access INFO 2024-04-17 16:46:22,298 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48798 - "GET /api/histories?view=summary HTTP/1.1" 200
2107 uvicorn.access INFO 2024-04-17 16:46:22,380 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48782 - "GET /history/current_history_json HTTP/1.1" 200
2108 uvicorn.access INFO 2024-04-17 16:46:22,939 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /api/tools/segalign/build?version=0.1.2.1+galaxy0&tool_version=0.1.2.1+galaxy0 HTTP/1.1" 200
2109 uvicorn.access INFO 2024-04-17 16:46:24,127 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /api/tools/segalign/citations HTTP/1.1" 200
2110 uvicorn.access INFO 2024-04-17 16:46:24,141 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /static/dist/CitationJS.bundled.js HTTP/1.1" 200
2111 uvicorn.access INFO 2024-04-17 16:46:24,902 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200
2112 uvicorn.access INFO 2024-04-17 16:46:25,130 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /static/dist/56d4c7ce2d3591a02107.gif HTTP/1.1" 304
2113 uvicorn.access INFO 2024-04-17 16:46:25,811 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /api/entry_points?running=true HTTP/1.1" 200
2114 uvicorn.access INFO 2024-04-17 16:46:26,581 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "POST /api/tools/segalign/build HTTP/1.1" 200
2115 uvicorn.access INFO 2024-04-17 16:46:27,963 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200
2116 uvicorn.access INFO 2024-04-17 16:46:31,000 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60936 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200
2117 uvicorn.access INFO 2024-04-17 16:46:34,050 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200
2118 galaxy.tools INFO 2024-04-17 16:46:35,234 [pN:main.1,p:100659,tN:WSGI_3] Validated and populated state for tool request (26.011 ms)
2119 galaxy.tools.actions INFO 2024-04-17 16:46:35,258 [pN:main.1,p:100659,tN:WSGI_3] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (1.010 ms)
2120 galaxy.tools.actions INFO 2024-04-17 16:46:35,258 [pN:main.1,p:100659,tN:WSGI_3] Added output datasets to history (0.253 ms)
2121 galaxy.tools.actions INFO 2024-04-17 16:46:35,260 [pN:main.1,p:100659,tN:WSGI_3] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.278 ms)
2122 galaxy.tools.actions INFO 2024-04-17 16:46:35,284 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for job Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (24.575 ms)
2123 galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,297 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (12.006 ms)
2124 galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,297 [pN:main.1,p:100659,tN:WSGI_3] (Job[id=2,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method
2125 galaxy.tools.actions INFO 2024-04-17 16:46:35,464 [pN:main.1,p:100659,tN:WSGI_3] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (0.846 ms)
2126 galaxy.tools.actions INFO 2024-04-17 16:46:35,465 [pN:main.1,p:100659,tN:WSGI_3] Added output datasets to history (0.251 ms)
2127 galaxy.tools.actions INFO 2024-04-17 16:46:35,466 [pN:main.1,p:100659,tN:WSGI_3] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.090 ms)
2128 galaxy.tools.actions INFO 2024-04-17 16:46:35,485 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for job Job[id=3,tool_id=CONVERTER_gz_to_uncompressed] (19.052 ms)
2129 galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,496 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for Job[id=3,tool_id=CONVERTER_gz_to_uncompressed] (10.959 ms)
2130 galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,496 [pN:main.1,p:100659,tN:WSGI_3] (Job[id=3,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method
2131 galaxy.security.object_wrapper WARNING 2024-04-17 16:46:35,592 [pN:main.1,p:100659,tN:WSGI_3] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class()
2132 galaxy.tools.actions INFO 2024-04-17 16:46:35,596 [pN:main.1,p:100659,tN:WSGI_3] Handled output named segalign_diagonal_partition_output for tool segalign (3.076 ms)
2133 galaxy.tools.actions INFO 2024-04-17 16:46:35,602 [pN:main.1,p:100659,tN:WSGI_3] Added output datasets to history (6.030 ms)
2134 galaxy.tools.actions INFO 2024-04-17 16:46:35,604 [pN:main.1,p:100659,tN:WSGI_3] Setup for job Job[unflushed,tool_id=segalign] complete, ready to be enqueued (1.362 ms)
2135 galaxy.tools.execute DEBUG 2024-04-17 16:46:35,604 [pN:main.1,p:100659,tN:WSGI_3] Tool segalign created job None (360.449 ms)
2136 galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,622 [pN:main.1,p:100659,tN:WSGI_3] (Job[id=4,tool_id=segalign]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method
2137 galaxy.tools.execute DEBUG 2024-04-17 16:46:35,628 [pN:main.1,p:100659,tN:WSGI_3] Created 1 job(s) for tool segalign request (394.017 ms)
2138 uvicorn.access INFO 2024-04-17 16:46:35,653 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "POST /api/tools HTTP/1.1" 200
2139 uvicorn.access INFO 2024-04-17 16:46:35,689 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55074 - "GET /static/dist/b7327582a95704df7902.png HTTP/1.1" 304
2140 uvicorn.access INFO 2024-04-17 16:46:35,705 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200
2141 uvicorn.access INFO 2024-04-17 16:46:35,768 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:46:15.726Z HTTP/1.1" 200
2142 uvicorn.access INFO 2024-04-17 16:46:35,859 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200
2143 uvicorn.access INFO 2024-04-17 16:46:35,877 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55076 - "GET /api/entry_points?running=true HTTP/1.1" 200
2144 uvicorn.access INFO 2024-04-17 16:46:35,910 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55074 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200
2145 galaxy.jobs.mapper DEBUG 2024-04-17 16:46:35,917 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: planemo_dest
2146 galaxy.jobs.handler DEBUG 2024-04-17 16:46:35,933 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to planemo_runner runner
2147 galaxy.jobs DEBUG 2024-04-17 16:46:35,965 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: planemo_dest)
2148 galaxy.jobs DEBUG 2024-04-17 16:46:35,976 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2
2149 galaxy.jobs.runners DEBUG 2024-04-17 16:46:35,985 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [2] queued (52.149 ms)
2150 galaxy.jobs.handler INFO 2024-04-17 16:46:35,995 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched
2151 galaxy.jobs.mapper DEBUG 2024-04-17 16:46:36,022 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: planemo_dest
2152 galaxy.jobs.handler DEBUG 2024-04-17 16:46:36,048 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to planemo_runner runner
2153 galaxy.jobs DEBUG 2024-04-17 16:46:36,121 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: planemo_dest)
2154 galaxy.jobs DEBUG 2024-04-17 16:46:36,142 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3
2155 galaxy.jobs.runners DEBUG 2024-04-17 16:46:36,158 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [3] queued (109.619 ms)
2156 galaxy.jobs.handler INFO 2024-04-17 16:46:36,169 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched
2157 galaxy.jobs DEBUG 2024-04-17 16:46:36,255 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (211.172 ms)
2158 galaxy.jobs.command_factory INFO 2024-04-17 16:46:36,279 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/tool_script.sh] for tool command [cp '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/configs/tmp4en5ovlk' 'galaxy.json' && gzip -dcf '/scratch/rico/tmp/tmp12w4107b/files/f/9/4/dataset_f942d97c-6c27-4ee4-8ad1-bb1227186612.dat' > '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/outputs/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat']
2159 galaxy.jobs DEBUG 2024-04-17 16:46:36,431 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Job wrapper for Job [3] prepared (216.640 ms)
2160 galaxy.jobs.command_factory INFO 2024-04-17 16:46:36,453 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/tool_script.sh] for tool command [cp '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/configs/tmpv3xndsel' 'galaxy.json' && gzip -dcf '/scratch/rico/tmp/tmp12w4107b/files/f/e/9/dataset_fe981322-ad11-477a-8c4f-623aad83cb29.dat' > '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/outputs/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat']
2161 galaxy.jobs.runners DEBUG 2024-04-17 16:46:36,552 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs
2162 if [ -d _working ]; then
2163 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs
2164 else
2165 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs
2166 fi
2167 cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/galaxy_2.ec; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2';
2168 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code"
2169 galaxy.jobs.runners.local DEBUG 2024-04-17 16:46:36,575 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (2) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/galaxy_2.sh
2170 galaxy.jobs.runners DEBUG 2024-04-17 16:46:36,796 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (3) command is: mkdir -p working outputs configs
2171 if [ -d _working ]; then
2172 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs
2173 else
2174 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs
2175 fi
2176 cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/galaxy_3.ec; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3';
2177 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code"
2178 galaxy.jobs.runners.local DEBUG 2024-04-17 16:46:36,817 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (3) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/galaxy_3.sh
2179 uvicorn.access INFO 2024-04-17 16:46:38,847 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55092 - "GET /history/current_history_json?since=2024-04-17T20:46:35.000614 HTTP/1.1" 200
2180 uvicorn.access INFO 2024-04-17 16:46:38,901 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55092 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:46:35.712Z HTTP/1.1" 200
2181 uvicorn.access INFO 2024-04-17 16:46:38,952 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55092 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200
2182 uvicorn.access INFO 2024-04-17 16:46:38,992 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55098 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200
2183 uvicorn.access INFO 2024-04-17 16:46:41,942 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55100 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200
2184 uvicorn.access INFO 2024-04-17 16:46:44,979 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55108 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200
2185 uvicorn.access INFO 2024-04-17 16:46:45,828 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55108 - "GET /api/entry_points?running=true HTTP/1.1" 200
2186 uvicorn.access INFO 2024-04-17 16:46:48,012 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40404 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200
2187 uvicorn.access INFO 2024-04-17 16:46:51,045 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40420 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200
2188 uvicorn.access INFO 2024-04-17 16:46:54,082 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40422 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200
2189 uvicorn.access INFO 2024-04-17 16:46:55,831 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40422 - "GET /api/entry_points?running=true HTTP/1.1" 200
2190 uvicorn.access INFO 2024-04-17 16:46:57,115 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40422 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200
2191 uvicorn.access INFO 2024-04-17 16:47:00,147 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40818 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200
2192 galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 16:47:25,303 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 101735
2193 galaxy.jobs.runners.local DEBUG 2024-04-17 16:47:25,305 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/galaxy_3.sh
2194 galaxy.jobs DEBUG 2024-04-17 16:47:25,335 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/outputs/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat to /scratch/rico/tmp/tmp12w4107b/files/f/1/3/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat
2195 galaxy.tool_util.provided_metadata DEBUG 2024-04-17 16:47:25,367 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] unnamed outputs [{'output1': {'name': 'mm39.fa uncompressed', 'ext': 'fasta'}}]
2196 galaxy.model.metadata DEBUG 2024-04-17 16:47:25,391 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 4
2197 galaxy.jobs DEBUG 2024-04-17 16:47:25,458 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 3 executed (133.021 ms)
2198 galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 16:47:30,678 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 101719
2199 galaxy.jobs.runners.local DEBUG 2024-04-17 16:47:30,679 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/galaxy_2.sh
2200 galaxy.jobs DEBUG 2024-04-17 16:47:30,708 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/outputs/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat to /scratch/rico/tmp/tmp12w4107b/files/6/9/9/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat
2201 galaxy.tool_util.provided_metadata DEBUG 2024-04-17 16:47:30,740 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] unnamed outputs [{'output1': {'name': 'hg38.fa uncompressed', 'ext': 'fasta'}}]
2202 galaxy.model.metadata DEBUG 2024-04-17 16:47:30,757 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3
2203 galaxy.jobs.mapper DEBUG 2024-04-17 16:47:30,839 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: planemo_dest
2204 galaxy.jobs DEBUG 2024-04-17 16:47:30,861 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (162.272 ms)
2205 galaxy.jobs.handler DEBUG 2024-04-17 16:47:30,867 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to planemo_runner runner
2206 galaxy.jobs DEBUG 2024-04-17 16:47:30,893 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: planemo_dest)
2207 galaxy.jobs DEBUG 2024-04-17 16:47:30,901 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4
2208 galaxy.jobs.runners DEBUG 2024-04-17 16:47:30,909 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [4] queued (41.920 ms)
2209 galaxy.jobs.handler INFO 2024-04-17 16:47:30,916 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched
2210 galaxy.jobs DEBUG 2024-04-17 16:47:31,089 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Job wrapper for Job [4] prepared (147.029 ms)
2211 galaxy.tool_util.deps.conda_util DEBUG 2024-04-17 16:47:39,701 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Executing command: /afs/bx.psu.edu/home/rico/miniconda3/bin/conda list -f --json conda-libmamba-solver > '/scratch/rico/tmp/tmp12w4107b/tmp/tmp840by705'
2212 galaxy.tool_util.deps.conda_util DEBUG 2024-04-17 16:47:40,633 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Executing command: /afs/bx.psu.edu/home/rico/miniconda3/bin/conda create -y --quiet --strict-channel-priority --solver libmamba --override-channels --channel conda-forge --channel bioconda --channel defaults --name mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580 segalign-full=0.1.2.1 bashlex=0.18
2213 Channels:
2214 - conda-forge
2215 - bioconda
2216 - defaults
2217 Platform: linux-64
2218 Collecting package metadata (repodata.json): ...working... done
2219 Solving environment: ...working... done
2220
2221 ## Package Plan ##
2222
2223 environment location: /afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580
2224
2225 added / updated specs:
2226 - bashlex=0.18
2227 - segalign-full=0.1.2.1
2228
2229
2230 The following packages will be downloaded:
2231
2232 package | build
2233 ---------------------------|-----------------
2234 libsqlite-3.45.3 | h2797004_0 840 KB conda-forge
2235 ------------------------------------------------------------
2236 Total: 840 KB
2237
2238 The following NEW packages will be INSTALLED:
2239
2240 _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
2241 _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
2242 bashlex conda-forge/linux-64::bashlex-0.18-py312h7900ff3_1
2243 bzip2 conda-forge/linux-64::bzip2-1.0.8-hd590300_5
2244 ca-certificates conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0
2245 coreutils conda-forge/linux-64::coreutils-9.5-hd590300_0
2246 cuda-version conda-forge/noarch::cuda-version-11.8-h70ddcb2_3
2247 cudatoolkit conda-forge/linux-64::cudatoolkit-11.8.0-h4ba93d1_13
2248 grep conda-forge/linux-64::grep-3.11-he2e7a12_1
2249 icu conda-forge/linux-64::icu-73.2-h59595ed_0
2250 lastz bioconda/linux-64::lastz-1.04.22-h031d066_0
2251 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
2252 libboost conda-forge/linux-64::libboost-1.84.0-h8013b2b_2
2253 libexpat conda-forge/linux-64::libexpat-2.6.2-h59595ed_0
2254 libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
2255 libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_5
2256 libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_5
2257 libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
2258 libpng conda-forge/linux-64::libpng-1.6.43-h2797004_0
2259 libsqlite conda-forge/linux-64::libsqlite-3.45.3-h2797004_0
2260 libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_5
2261 libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
2262 libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
2263 libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
2264 mysql-connector-c conda-forge/linux-64::mysql-connector-c-6.1.11-h659d440_1008
2265 ncurses conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0
2266 openssl conda-forge/linux-64::openssl-3.2.1-hd590300_1
2267 pcre2 conda-forge/linux-64::pcre2-10.43-hcad00b1_0
2268 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
2269 python conda-forge/linux-64::python-3.12.3-hab00c5b_0_cpython
2270 python_abi conda-forge/linux-64::python_abi-3.12-4_cp312
2271 readline conda-forge/linux-64::readline-8.2-h8228510_1
2272 sed conda-forge/linux-64::sed-4.8-he412f7d_0
2273 segalign conda-forge/linux-64::segalign-0.1.2.1-h232f886_0
2274 segalign-full bioconda/noarch::segalign-full-0.1.2.1-hdfd78af_0
2275 setuptools conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
2276 tbb conda-forge/linux-64::tbb-2020.2-h4bd325d_4
2277 tbb-devel conda-forge/linux-64::tbb-devel-2020.2-h4bd325d_4
2278 tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
2279 tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0
2280 ucsc-fatotwobit bioconda/linux-64::ucsc-fatotwobit-455-h2a80c09_1
2281 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
2282 xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
2283 zstd conda-forge/linux-64::zstd-1.5.5-hfc55251_0
2284
2285
2286 Preparing transaction: ...working... done
2287 Verifying transaction: ...working... done
2288 Executing transaction: ...working...
2289 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
2290 [2024-04-17 16:50:22,410: DEBUG/MainProcess] beat: Synchronizing schedule...
2291 [2024-04-17 16:50:22,411: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2292 [2024-04-17 16:55:22,512: DEBUG/MainProcess] beat: Synchronizing schedule...
2293 [2024-04-17 16:55:22,514: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2294
2295 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
2296 By downloading and using the CUDA Toolkit conda packages, you accept the terms and conditions of the CUDA End User License Agreement (EULA): https://docs.nvidia.com/cuda/eula/index.html
2297
2298 done
2299 galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,634 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency segalign-full version 0.1.2.1 of type conda
2300 galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,634 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency bashlex version 0.18 of type conda
2301 galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,636 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency segalign-full version 0.1.2.1 of type conda
2302 galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,636 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency bashlex version 0.18 of type conda
2303 galaxy.jobs.command_factory INFO 2024-04-17 16:56:24,663 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/tool_script.sh] for tool command [[ "$(basename "$CONDA_DEFAULT_ENV")" = "$(basename '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580')" ] || {
2304 MAX_TRIES=3
2305 COUNT=0
2306 while [ $COUNT -lt $MAX_TRIES ]; do
2307 . '/afs/bx.psu.edu/home/rico/miniconda3/bin/activate' '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580' > conda_activate.log 2>&1
2308 if [ $? -eq 0 ];then
2309 break
2310 else
2311 let COUNT=COUNT+1
2312 if [ $COUNT -eq $MAX_TRIES ];then
2313 echo "Failed to activate conda environment! Error was:"
2314 cat conda_activate.log
2315 exit 1
2316 fi
2317 sleep 10s
2318 fi
2319 done
2320 } ; [ "$(basename "$CONDA_DEFAULT_ENV")" = "$(basename '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580')" ] || {
2321 MAX_TRIES=3
2322 COUNT=0
2323 while [ $COUNT -lt $MAX_TRIES ]; do
2324 . '/afs/bx.psu.edu/home/rico/miniconda3/bin/activate' '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580' > conda_activate.log 2>&1
2325 if [ $? -eq 0 ];then
2326 break
2327 else
2328 let COUNT=COUNT+1
2329 if [ $COUNT -eq $MAX_TRIES ];then
2330 echo "Failed to activate conda environment! Error was:"
2331 cat conda_activate.log
2332 exit 1
2333 fi
2334 sleep 10s
2335 fi
2336 done
2337 } ; OMP_THREAD_LIMIT=${GALAXY_SLOTS:-2} '/scratch/rico/galaxytools/tools/segalign/run_segalign_diagonal_partition' --tool_directory '/scratch/rico/galaxytools/tools/segalign' --max_segments '20000' '/scratch/rico/tmp/tmp12w4107b/files/6/9/9/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat' '/scratch/rico/tmp/tmp12w4107b/files/f/1/3/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat' --strand 'both' --seed '12of19' --step '1' --xdrop '910' --hspthresh '3000' --ydrop '9430' --format 'maf-' --wga_chunk_size '250000' --lastz_interval_size '10000000' --seq_block_size '500000000' --num_gpu '-1' && '/scratch/rico/galaxytools/tools/segalign/package_output.py']
2338 galaxy.jobs.runners DEBUG 2024-04-17 16:56:24,787 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (4) command is: mkdir -p working outputs configs
2339 if [ -d _working ]; then
2340 rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs
2341 else
2342 cp -R working _working; cp -R outputs _outputs; cp -R configs _configs
2343 fi
2344 cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/galaxy_4.ec;
2345 if [ -f "/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/working/data_package.tgz" ] ; then cp "/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/working/data_package.tgz" "/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/outputs/dataset_1d496340-1818-4e76-86a7-2b787301634c.dat" ; fi; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4';
2346 [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code"
2347 galaxy.jobs.runners.local DEBUG 2024-04-17 16:56:24,808 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (4) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/galaxy_4.sh
2348
2349 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
2350 [2024-04-17 17:00:22,614: DEBUG/MainProcess] beat: Synchronizing schedule...
2351 [2024-04-17 17:00:22,615: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2352 [2024-04-17 17:05:22,713: DEBUG/MainProcess] beat: Synchronizing schedule...
2353 [2024-04-17 17:05:22,715: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2354 [2024-04-17 17:10:22,815: DEBUG/MainProcess] beat: Synchronizing schedule...
2355 [2024-04-17 17:10:22,817: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2356 [2024-04-17 17:15:22,913: DEBUG/MainProcess] beat: Synchronizing schedule...
2357 [2024-04-17 17:15:22,914: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2358 [2024-04-17 17:20:23,014: DEBUG/MainProcess] beat: Synchronizing schedule...
2359 [2024-04-17 17:20:23,016: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2360 [2024-04-17 17:25:23,116: DEBUG/MainProcess] beat: Synchronizing schedule...
2361 [2024-04-17 17:25:23,118: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2362 [2024-04-17 17:30:23,218: DEBUG/MainProcess] beat: Synchronizing schedule...
2363 [2024-04-17 17:30:23,219: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2364 [2024-04-17 17:35:23,319: DEBUG/MainProcess] beat: Synchronizing schedule...
2365 [2024-04-17 17:35:23,320: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
2366 [2024-04-17 17:40:22,201: DEBUG/MainProcess] beat: Synchronizing schedule...
2367 [2024-04-17 17:40:22,213: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
2368 [2024-04-17 17:40:22,268: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->a53db5e6-3ad7-463e-9c71-58b0cca1e6f9
2369 [2024-04-17 17:40:22,269: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
2370 [2024-04-17 17:40:22,275: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->9f43558c-252f-4782-a230-b3676057864b
2371 [2024-04-17 17:40:22,276: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
2372
2373 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
2374 [2024-04-17 17:40:22,576: INFO/MainProcess] Task galaxy.prune_history_audit_table[a53db5e6-3ad7-463e-9c71-58b0cca1e6f9] received
2375 [2024-04-17 17:40:22,577: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'd53240c6-f1d5-4de4-8451-f7dbd0211234'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
2376 [2024-04-17 17:40:22,599: INFO/MainProcess] Task galaxy.cleanup_short_term_storage[9f43558c-252f-4782-a230-b3676057864b] received
2377 [2024-04-17 17:40:22,599: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '9f43558c-252f-4782-a230-b3676057864b', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '9f43558c-252f-4782-a230-b3676057864b', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '9f43558c-252f-4782-a230-b3676057864b', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '9f43558c-252f-4782-a230-b3676057864b', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '9fa55259-d6e7-4691-ae93-dfedcdf4ca9f'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '9f43558c-252f-4782-a230-b3676057864b', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
2378 [2024-04-17 17:40:23,768: DEBUG/MainProcess] python path is: /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/local/lib/python38.zip, /usr/local/lib/python3.8, /usr/local/lib/python3.8/lib-dynload, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages
2379 [2024-04-17 17:40:23,769: DEBUG/MainProcess] python path is: /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/local/lib/python38.zip, /usr/local/lib/python3.8, /usr/local/lib/python3.8/lib-dynload, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages
2380 [2024-04-17 17:40:23,769: DEBUG/MainProcess] Configuration directory is /scratch/rico/tmp/tmp12w4107b
2381 [2024-04-17 17:40:23,769: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database
2382 [2024-04-17 17:40:23,769: DEBUG/MainProcess] Managed config directory is /scratch/rico/tmp/tmp12w4107b
2383 [2024-04-17 17:40:23,770: DEBUG/MainProcess] Configuration directory is /scratch/rico/tmp/tmp12w4107b
2384 [2024-04-17 17:40:23,770: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database
2385 [2024-04-17 17:40:23,770: DEBUG/MainProcess] Managed config directory is /scratch/rico/tmp/tmp12w4107b
2386 [2024-04-17 17:40:23,970: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key
2387 [2024-04-17 17:40:23,975: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key
2388 [2024-04-17 17:40:23,978: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json
2389 [2024-04-17 17:40:23,978: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json
2390 [2024-04-17 17:40:23,982: INFO/MainProcess] Install database targeting Galaxy's database configuration.
2391 [2024-04-17 17:40:23,985: INFO/MainProcess] Install database targeting Galaxy's database configuration.
2392 [2024-04-17 17:40:23,986: DEBUG/main] WeblessApplicationStack initialized
2393 [2024-04-17 17:40:23,987: DEBUG/main] WeblessApplicationStack initialized
2394 [2024-04-17 17:40:23,993: DEBUG/main] Loading job configuration from /scratch/rico/tmp/tmp12w4107b/job_conf.xml
2395 [2024-04-17 17:40:23,993: DEBUG/main] Loading job configuration from /scratch/rico/tmp/tmp12w4107b/job_conf.xml
2396 [2024-04-17 17:40:23,994: DEBUG/main] Read job configuration from file: /scratch/rico/tmp/tmp12w4107b/job_conf.xml
2397 [2024-04-17 17:40:23,994: DEBUG/main] Read job configuration from file: /scratch/rico/tmp/tmp12w4107b/job_conf.xml
2398 [2024-04-17 17:40:24,004: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default
2399 [2024-04-17 17:40:24,004: INFO/main] Job handler assignment methods set to: db-skip-locked
2400 [2024-04-17 17:40:24,004: DEBUG/main] default set to child with id or tag 'planemo_dest'
2401 [2024-04-17 17:40:24,004: DEBUG/main] Done loading job configuration
2402 [2024-04-17 17:40:24,010: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default
2403 [2024-04-17 17:40:24,010: INFO/main] Job handler assignment methods set to: db-skip-locked
2404 [2024-04-17 17:40:24,010: DEBUG/main] default set to child with id or tag 'planemo_dest'
2405 [2024-04-17 17:40:24,010: DEBUG/main] Done loading job configuration
2406 [2024-04-17 17:40:24,144: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml
2407 [2024-04-17 17:40:24,147: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml
2408 [2024-04-17 17:40:24,362: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample
2409 [2024-04-17 17:40:24,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h.
2410 [2024-04-17 17:40:24,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c.
2411 [2024-04-17 17:40:24,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp.
2412 [2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py.
2413 [2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go.
2414 [2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs.
2415 [2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs.
2416 [2024-04-17 17:40:24,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root.
2417 [2024-04-17 17:40:24,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2.
2418 [2024-04-17 17:40:24,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1.
2419 [2024-04-17 17:40:24,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg.
2420 [2024-04-17 17:40:24,416: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp.
2421 [2024-04-17 17:40:24,417: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile.
2422 [2024-04-17 17:40:24,418: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite.
2423 [2024-04-17 17:40:24,418: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample
2424 [2024-04-17 17:40:24,419: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier.
2425 [2024-04-17 17:40:24,419: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h.
2426 [2024-04-17 17:40:24,419: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db.
2427 [2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c.
2428 [2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db.
2429 [2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp.
2430 [2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db.
2431 [2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py.
2432 [2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db.
2433 [2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go.
2434 [2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile.
2435 [2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs.
2436 [2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db.
2437 [2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs.
2438 [2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db.
2439 [2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root.
2440 [2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state.
2441 [2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2.
2442 [2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db.
2443 [2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1.
2444 [2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability.
2445 [2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg.
2446 [2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff.
2447 [2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp.
2448 [2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf.
2449 [2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile.
2450 [2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1.
2451 [2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite.
2452 [2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2.
2453 [2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier.
2454 [2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1.
2455 [2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db.
2456 [2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary.
2457 [2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db.
2458 [2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt.
2459 [2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db.
2460 [2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli.
2461 [2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db.
2462 [2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam.
2463 [2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile.
2464 [2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai.
2465 [2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db.
2466 [2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam.
2467 [2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db.
2468 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam.
2469 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state.
2470 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam.
2471 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db.
2472 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam.
2473 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability.
2474 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram.
2475 [2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff.
2476 [2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed.
2477 [2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf.
2478 [2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph.
2479 [2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1.
2480 [2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict.
2481 [2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2.
2482 [2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6.
2483 [2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1.
2484 [2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12.
2485 [2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary.
2486 [2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed.
2487 [2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt.
2488 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli.
2489 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam.
2490 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai.
2491 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam.
2492 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam.
2493 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam.
2494 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam.
2495 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram.
2496 [2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed.
2497 [2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph.
2498 [2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict.
2499 [2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6.
2500 [2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12.
2501 [2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed.
2502 [2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len.
2503 [2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len.
2504 [2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa.
2505 [2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa.
2506 [2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6.
2507 [2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6.
2508 [2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd.
2509 [2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd.
2510 [2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet.
2511 [2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet.
2512 [2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat.
2513 [2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat.
2514 [2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed.
2515 [2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed.
2516 [2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig.
2517 [2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig.
2518 [2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb.
2519 [2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb.
2520 [2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint.
2521 [2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint.
2522 [2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv.
2523 [2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv.
2524 [2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv.
2525 [2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv.
2526 [2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular.
2527 [2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular.
2528 [2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack.
2529 [2024-04-17 17:40:24,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack.
2530 [2024-04-17 17:40:24,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index.
2531 [2024-04-17 17:40:24,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index.
2532 [2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index.
2533 [2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index.
2534 [2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta.
2535 [2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta.
2536 [2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data.
2537 [2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data.
2538 [2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz.
2539 [2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz.
2540 [2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary.
2541 [2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary.
2542 [2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy.
2543 [2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy.
2544 [2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json.
2545 [2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json.
2546 [2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson.
2547 [2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson.
2548 [2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json.
2549 [2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json.
2550 [2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn.
2551 [2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn.
2552 [2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai.
2553 [2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai.
2554 [2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta.
2555 [2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta.
2556 [2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg.
2557 [2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg.
2558 [2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq.
2559 [2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq.
2560 [2024-04-17 17:40:24,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger.
2561 [2024-04-17 17:40:24,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger.
2562 [2024-04-17 17:40:24,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa.
2563 [2024-04-17 17:40:24,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa.
2564 [2024-04-17 17:40:24,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger.
2565 [2024-04-17 17:40:24,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger.
2566 [2024-04-17 17:40:24,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina.
2567 [2024-04-17 17:40:24,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina.
2568 [2024-04-17 17:40:24,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc.
2569 [2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc.
2570 [2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland.
2571 [2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland.
2572 [2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti.
2573 [2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti.
2574 [2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack.
2575 [2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack.
2576 [2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff.
2577 [2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff.
2578 [2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3.
2579 [2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3.
2580 [2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif.
2581 [2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif.
2582 [2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip.
2583 [2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip.
2584 [2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot.
2585 [2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot.
2586 [2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf.
2587 [2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf.
2588 [2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz.
2589 [2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz.
2590 [2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5.
2591 [2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5.
2592 [2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool.
2593 [2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool.
2594 [2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib.
2595 [2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib.
2596 [2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom.
2597 [2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom.
2598 [2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad.
2599 [2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad.
2600 [2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5.
2601 [2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5.
2602 [2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json.
2603 [2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json.
2604 [2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace.
2605 [2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace.
2606 [2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool.
2607 [2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool.
2608 [2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool.
2609 [2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool.
2610 [2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm.
2611 [2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm.
2612 [2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model.
2613 [2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model.
2614 [2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html.
2615 [2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html.
2616 [2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html.
2617 [2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html.
2618 [2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval.
2619 [2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval.
2620 [2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish.
2621 [2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish.
2622 [2024-04-17 17:40:25,333: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab.
2623 [2024-04-17 17:40:25,333: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab.
2624 [2024-04-17 17:40:25,333: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json.
2625 [2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json.
2626 [2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list.
2627 [2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list.
2628 [2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval.
2629 [2024-04-17 17:40:25,335: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval.
2630 [2024-04-17 17:40:25,335: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report.
2631 [2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report.
2632 [2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp.
2633 [2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp.
2634 [2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche.
2635 [2024-04-17 17:40:25,337: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche.
2636 [2024-04-17 17:40:25,337: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal.
2637 [2024-04-17 17:40:25,337: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal.
2638 [2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr.
2639 [2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr.
2640 [2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg.
2641 [2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg.
2642 [2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff.
2643 [2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff.
2644 [2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2.
2645 [2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2.
2646 [2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8.
2647 [2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8.
2648 [2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf.
2649 [2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf.
2650 [2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif.
2651 [2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif.
2652 [2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs.
2653 [2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs.
2654 [2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn.
2655 [2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn.
2656 [2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif.
2657 [2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif.
2658 [2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff.
2659 [2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff.
2660 [2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms.
2661 [2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms.
2662 [2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu.
2663 [2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu.
2664 [2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi.
2665 [2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi.
2666 [2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs.
2667 [2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs.
2668 [2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide.
2669 [2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide.
2670 [2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp.
2671 [2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp.
2672 [2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im.
2673 [2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im.
2674 [2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd.
2675 [2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd.
2676 [2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx.
2677 [2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx.
2678 [2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm.
2679 [2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm.
2680 [2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd.
2681 [2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd.
2682 [2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm.
2683 [2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm.
2684 [2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm.
2685 [2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm.
2686 [2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb.
2687 [2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb.
2688 [2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm.
2689 [2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm.
2690 [2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm.
2691 [2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm.
2692 [2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd.
2693 [2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd.
2694 [2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr.
2695 [2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr.
2696 [2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps.
2697 [2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps.
2698 [2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza.
2699 [2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza.
2700 [2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv.
2701 [2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv.
2702 [2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular.
2703 [2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular.
2704 [2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip.
2705 [2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip.
2706 [2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip.
2707 [2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip.
2708 [2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar.
2709 [2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar.
2710 [2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory.
2711 [2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory.
2712 [2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml.
2713 [2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml.
2714 [2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm.
2715 [2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm.
2716 [2024-04-17 17:40:25,355: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta.
2717 [2024-04-17 17:40:25,355: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta.
2718 [2024-04-17 17:40:25,355: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d.
2719 [2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d.
2720 [2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta.
2721 [2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta.
2722 [2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml.
2723 [2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml.
2724 [2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml.
2725 [2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml.
2726 [2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml.
2727 [2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml.
2728 [2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml.
2729 [2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml.
2730 [2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml.
2731 [2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml.
2732 [2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml.
2733 [2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml.
2734 [2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik.
2735 [2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik.
2736 [2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist.
2737 [2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist.
2738 [2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms.
2739 [2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms.
2740 [2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv.
2741 [2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv.
2742 [2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv.
2743 [2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv.
2744 [2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat.
2745 [2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat.
2746 [2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid.
2747 [2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid.
2748 [2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml.
2749 [2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml.
2750 [2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem.
2751 [2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem.
2752 [2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms.
2753 [2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms.
2754 [2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw.
2755 [2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw.
2756 [2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar.
2757 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar.
2758 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar.
2759 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar.
2760 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar.
2761 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar.
2762 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar.
2763 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar.
2764 [2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar.
2765 [2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar.
2766 [2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar.
2767 [2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar.
2768 [2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar.
2769 [2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar.
2770 [2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml.
2771 [2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml.
2772 [2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab.
2773 [2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab.
2774 [2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2.
2775 [2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2.
2776 [2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml.
2777 [2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml.
2778 [2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml.
2779 [2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml.
2780 [2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb.
2781 [2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb.
2782 [2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3.
2783 [2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3.
2784 [2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf.
2785 [2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf.
2786 [2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff.
2787 [2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff.
2788 [2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2.
2789 [2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2.
2790 [2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml.
2791 [2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml.
2792 [2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata.
2793 [2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata.
2794 [2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2.
2795 [2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2.
2796 [2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq.
2797 [2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq.
2798 [2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite.
2799 [2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite.
2800 [2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite.
2801 [2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite.
2802 [2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw.
2803 [2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw.
2804 [2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp.
2805 [2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp.
2806 [2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml.
2807 [2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml.
2808 [2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml.
2809 [2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml.
2810 [2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml.
2811 [2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml.
2812 [2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml.
2813 [2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml.
2814 [2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml.
2815 [2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml.
2816 [2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml.
2817 [2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml.
2818 [2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml.
2819 [2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml.
2820 [2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml.
2821 [2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml.
2822 [2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc.
2823 [2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc.
2824 [2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp.
2825 [2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp.
2826 [2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex.
2827 [2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex.
2828 [2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib.
2829 [2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib.
2830 [2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib.
2831 [2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib.
2832 [2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib.
2833 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib.
2834 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib.
2835 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib.
2836 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf.
2837 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf.
2838 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb.
2839 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb.
2840 [2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3.
2841 [2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3.
2842 [2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps.
2843 [2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps.
2844 [2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct.
2845 [2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct.
2846 [2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql.
2847 [2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql.
2848 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive.
2849 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive.
2850 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar.
2851 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar.
2852 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz.
2853 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz.
2854 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2.
2855 [2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2.
2856 [2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive.
2857 [2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive.
2858 [2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin.
2859 [2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin.
2860 [2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout.
2861 [2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout.
2862 [2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor.
2863 [2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor.
2864 [2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik.
2865 [2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik.
2866 [2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml.
2867 [2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml.
2868 [2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75.
2869 [2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75.
2870 [2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1.
2871 [2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1.
2872 [2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2.
2873 [2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2.
2874 [2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii.
2875 [2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii.
2876 [2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck.
2877 [2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck.
2878 [2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk.
2879 [2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk.
2880 [2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc.
2881 [2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc.
2882 [2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star.
2883 [2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star.
2884 [2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff.
2885 [2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff.
2886 [2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml.
2887 [2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml.
2888 [2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs.
2889 [2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs.
2890 [2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext.
2891 [2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext.
2892 [2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr.
2893 [2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr.
2894 [2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi.
2895 [2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi.
2896 [2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1.
2897 [2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1.
2898 [2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2.
2899 [2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2.
2900 [2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3.
2901 [2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3.
2902 [2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore.
2903 [2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore.
2904 [2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe.
2905 [2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe.
2906 [2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom.
2907 [2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom.
2908 [2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset.
2909 [2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset.
2910 [2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt.
2911 [2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt.
2912 [2024-04-17 17:40:25,387: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt.
2913 [2024-04-17 17:40:25,387: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt.
2914 [2024-04-17 17:40:25,387: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt.
2915 [2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt.
2916 [2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive.
2917 [2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive.
2918 [2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix.
2919 [2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix.
2920 [2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf.
2921 [2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf.
2922 [2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps.
2923 [2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps.
2924 [2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast.
2925 [2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast.
2926 [2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj.
2927 [2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj.
2928 [2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav.
2929 [2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav.
2930 [2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf.
2931 [2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf.
2932 [2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack.
2933 [2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack.
2934 [2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx.
2935 [2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx.
2936 [2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap.
2937 [2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap.
2938 [2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak.
2939 [2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak.
2940 [2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf.
2941 [2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf.
2942 [2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup.
2943 [2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup.
2944 [2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl.
2945 [2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl.
2946 [2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo.
2947 [2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo.
2948 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl.
2949 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl.
2950 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png.
2951 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png.
2952 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual.
2953 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual.
2954 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa.
2955 [2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa.
2956 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina.
2957 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina.
2958 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid.
2959 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid.
2960 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454.
2961 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454.
2962 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps.
2963 [2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps.
2964 [2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam.
2965 [2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam.
2966 [2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf.
2967 [2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf.
2968 [2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences.
2969 [2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences.
2970 [2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb.
2971 [2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb.
2972 [2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp.
2973 [2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp.
2974 [2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular.
2975 [2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular.
2976 [2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff.
2977 [2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff.
2978 [2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra.
2979 [2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra.
2980 [2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular.
2981 [2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular.
2982 [2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg.
2983 [2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg.
2984 [2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy.
2985 [2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy.
2986 [2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular.
2987 [2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular.
2988 [2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit.
2989 [2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit.
2990 [2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass.
2991 [2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass.
2992 [2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite.
2993 [2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite.
2994 [2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite.
2995 [2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite.
2996 [2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite.
2997 [2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite.
2998 [2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite.
2999 [2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite.
3000 [2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite.
3001 [2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite.
3002 [2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt.
3003 [2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt.
3004 [2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount.
3005 [2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount.
3006 [2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp.
3007 [2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp.
3008 [2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml.
3009 [2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml.
3010 [2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml.
3011 [2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml.
3012 [2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml.
3013 [2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml.
3014 [2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd.
3015 [2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd.
3016 [2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi.
3017 [2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi.
3018 [2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf.
3019 [2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf.
3020 [2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf.
3021 [2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf.
3022 [2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip.
3023 [2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip.
3024 [2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed.
3025 [2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed.
3026 [2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet.
3027 [2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet.
3028 [2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig.
3029 [2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig.
3030 [2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index.
3031 [2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index.
3032 [2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi.
3033 [2024-04-17 17:40:25,408: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi.
3034 [2024-04-17 17:40:25,408: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg.
3035 [2024-04-17 17:40:25,409: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg.
3036 [2024-04-17 17:40:25,409: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg.
3037 [2024-04-17 17:40:25,409: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg.
3038 [2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2.
3039 [2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2.
3040 [2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3.
3041 [2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3.
3042 [2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx.
3043 [2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx.
3044 [2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix.
3045 [2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix.
3046 [2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz.
3047 [2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz.
3048 [2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz.
3049 [2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz.
3050 [2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz.
3051 [2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz.
3052 [2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz.
3053 [2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz.
3054 [2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip.
3055 [2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip.
3056 [2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip.
3057 [2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip.
3058 [2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus.
3059 [2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus.
3060 [2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx.
3061 [2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx.
3062 [2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml.
3063 [2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml.
3064 [2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick.
3065 [2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick.
3066 [2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx.
3067 [2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx.
3068 [2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex.
3069 [2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex.
3070 [2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree.
3071 [2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree.
3072 [2024-04-17 17:40:25,418: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist.
3073 [2024-04-17 17:40:25,418: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist.
3074 [2024-04-17 17:40:25,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch.
3075 [2024-04-17 17:40:25,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch.
3076 [2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno.
3077 [2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno.
3078 [2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca.
3079 [2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca.
3080 [2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset.
3081 [2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset.
3082 [2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped.
3083 [2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped.
3084 [2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe.
3085 [2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe.
3086 [2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg.
3087 [2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg.
3088 [2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep.
3089 [2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep.
3090 [2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist.
3091 [2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist.
3092 [2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped.
3093 [2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped.
3094 [2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed.
3095 [2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed.
3096 [2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno.
3097 [2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno.
3098 [2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe.
3099 [2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe.
3100 [2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase.
3101 [2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase.
3102 [2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics.
3103 [2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics.
3104 [2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest.
3105 [2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest.
3106 [2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix.
3107 [2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix.
3108 [2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls.
3109 [2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls.
3110 [2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb.
3111 [2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb.
3112 [2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json.
3113 [2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json.
3114 [2024-04-17 17:40:25,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json.
3115 [2024-04-17 17:40:25,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json.
3116 [2024-04-17 17:40:25,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml.
3117 [2024-04-17 17:40:25,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml.
3118 [2024-04-17 17:40:25,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif.
3119 [2024-04-17 17:40:25,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif.
3120 [2024-04-17 17:40:25,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples.
3121 [2024-04-17 17:40:25,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples.
3122 [2024-04-17 17:40:25,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt.
3123 [2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt.
3124 [2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt.
3125 [2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt.
3126 [2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3.
3127 [2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3.
3128 [2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl.
3129 [2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl.
3130 [2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf.
3131 [2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf.
3132 [2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld.
3133 [2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld.
3134 [2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls.
3135 [2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls.
3136 [2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx.
3137 [2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx.
3138 [2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted.
3139 [2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted.
3140 [2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai.
3141 [2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai.
3142 [2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db.
3143 [2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db.
3144 [2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge.
3145 [2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge.
3146 [2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans.
3147 [2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans.
3148 [2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips.
3149 [2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips.
3150 [2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp.
3151 [2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp.
3152 [2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet.
3153 [2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet.
3154 [2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq.
3155 [2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq.
3156 [2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot.
3157 [2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot.
3158 [2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport.
3159 [2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport.
3160 [2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp.
3161 [2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp.
3162 [2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut.
3163 [2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut.
3164 [2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan.
3165 [2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan.
3166 [2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest.
3167 [2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest.
3168 [2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg.
3169 [2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg.
3170 [2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted.
3171 [2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted.
3172 [2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind.
3173 [2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind.
3174 [2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem.
3175 [2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem.
3176 [2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome.
3177 [2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome.
3178 [2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem.
3179 [2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem.
3180 [2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak.
3181 [2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak.
3182 [2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc.
3183 [2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc.
3184 [2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro.
3185 [2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro.
3186 [2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran.
3187 [2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran.
3188 [2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier.
3189 [2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier.
3190 [2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee.
3191 [2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee.
3192 [2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix.
3193 [2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix.
3194 [2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment.
3195 [2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment.
3196 [2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore.
3197 [2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore.
3198 [2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match.
3199 [2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match.
3200 [2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable.
3201 [2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable.
3202 [2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle.
3203 [2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle.
3204 [2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport.
3205 [2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport.
3206 [2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek.
3207 [2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek.
3208 [2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn.
3209 [2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn.
3210 [2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome.
3211 [2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome.
3212 [2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil.
3213 [2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil.
3214 [2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo.
3215 [2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo.
3216 [2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats.
3217 [2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats.
3218 [2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot.
3219 [2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot.
3220 [2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg.
3221 [2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg.
3222 [2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq.
3223 [2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq.
3224 [2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch.
3225 [2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch.
3226 [2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat.
3227 [2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat.
3228 [2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf.
3229 [2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf.
3230 [2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack.
3231 [2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack.
3232 [2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider.
3233 [2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider.
3234 [2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher.
3235 [2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher.
3236 [2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco.
3237 [2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco.
3238 [2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch.
3239 [2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch.
3240 [2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip.
3241 [2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip.
3242 [2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble.
3243 [2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble.
3244 [2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount.
3245 [2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount.
3246 [2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif.
3247 [2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif.
3248 [2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq.
3249 [2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq.
3250 [2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel.
3251 [2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel.
3252 [2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable.
3253 [2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable.
3254 [2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif.
3255 [2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif.
3256 [2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions.
3257 [2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions.
3258 [2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable.
3259 [2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable.
3260 [2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple.
3261 [2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple.
3262 [2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table.
3263 [2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table.
3264 [2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq.
3265 [2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq.
3266 [2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb.
3267 [2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb.
3268 [2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal.
3269 [2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal.
3270 [2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata.
3271 [2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata.
3272 [2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl.
3273 [2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl.
3274 [2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch.
3275 [2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch.
3276 [2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg.
3277 [2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg.
3278 [2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank.
3279 [2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank.
3280 [2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86.
3281 [2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86.
3282 [2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig.
3283 [2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig.
3284 [2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer.
3285 [2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer.
3286 [2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon.
3287 [2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon.
3288 [2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega.
3289 [2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega.
3290 [2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon.
3291 [2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon.
3292 [2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi.
3293 [2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi.
3294 [2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus.
3295 [2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus.
3296 [2024-04-17 17:40:25,461: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon.
3297 [2024-04-17 17:40:25,461: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon.
3298 [2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip.
3299 [2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip.
3300 [2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon.
3301 [2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon.
3302 [2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir.
3303 [2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir.
3304 [2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden.
3305 [2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden.
3306 [2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss.
3307 [2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss.
3308 [2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf.
3309 [2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf.
3310 [2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0.
3311 [2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0.
3312 [2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1.
3313 [2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1.
3314 [2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10.
3315 [2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10.
3316 [2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2.
3317 [2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2.
3318 [2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3.
3319 [2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3.
3320 [2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair.
3321 [2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair.
3322 [2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score.
3323 [2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score.
3324 [2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs.
3325 [2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs.
3326 [2024-04-17 17:40:25,468: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair.
3327 [2024-04-17 17:40:25,468: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair.
3328 [2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm.
3329 [2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm.
3330 [2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus.
3331 [2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus.
3332 [2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm.
3333 [2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm.
3334 [2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm.
3335 [2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm.
3336 [2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2.
3337 [2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2.
3338 [2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3.
3339 [2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3.
3340 [2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm.
3341 [2024-04-17 17:40:25,471: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm.
3342 [2024-04-17 17:40:25,471: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa.
3343 [2024-04-17 17:40:25,471: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa.
3344 [2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel.
3345 [2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel.
3346 [2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr.
3347 [2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr.
3348 [2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal.
3349 [2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal.
3350 [2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds.
3351 [2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds.
3352 [2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq.
3353 [2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq.
3354 [2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.
3355 [2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.
3356 [2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce.
3357 [2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce.
3358 [2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw.
3359 [2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw.
3360 [2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw.
3361 [2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw.
3362 [2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks.
3363 [2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks.
3364 [2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group.
3365 [2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group.
3366 [2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor.
3367 [2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor.
3368 [2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks.
3369 [2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks.
3370 [2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive.
3371 [2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive.
3372 [2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative.
3373 [2024-04-17 17:40:25,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative.
3374 [2024-04-17 17:40:25,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick.
3375 [2024-04-17 17:40:25,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick.
3376 [2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se.
3377 [2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se.
3378 [2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as.
3379 [2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as.
3380 [2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg.
3381 [2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg.
3382 [2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling.
3383 [2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling.
3384 [2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits.
3385 [2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits.
3386 [2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist.
3387 [2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist.
3388 [2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss.
3389 [2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss.
3390 [2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl.
3391 [2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl.
3392 [2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl.
3393 [2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl.
3394 [2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii.
3395 [2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii.
3396 [2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary.
3397 [2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary.
3398 [2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii.
3399 [2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii.
3400 [2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary.
3401 [2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary.
3402 [2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1.
3403 [2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1.
3404 [2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2.
3405 [2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2.
3406 [2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh.
3407 [2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh.
3408 [2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx.
3409 [2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx.
3410 [2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi.
3411 [2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi.
3412 [2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf.
3413 [2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf.
3414 [2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi.
3415 [2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi.
3416 [2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol.
3417 [2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol.
3418 [2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2.
3419 [2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2.
3420 [2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml.
3421 [2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml.
3422 [2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps.
3423 [2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps.
3424 [2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs.
3425 [2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs.
3426 [2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf.
3427 [2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf.
3428 [2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar.
3429 [2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar.
3430 [2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb.
3431 [2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb.
3432 [2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt.
3433 [2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt.
3434 [2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr.
3435 [2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr.
3436 [2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell.
3437 [2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell.
3438 [2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif.
3439 [2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif.
3440 [2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz.
3441 [2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz.
3442 [2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz.
3443 [2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz.
3444 [2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr.
3445 [2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr.
3446 [2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd.
3447 [2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd.
3448 [2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top.
3449 [2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top.
3450 [2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop.
3451 [2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop.
3452 [2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp.
3453 [2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp.
3454 [2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp.
3455 [2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp.
3456 [2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx.
3457 [2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx.
3458 [2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg.
3459 [2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg.
3460 [2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc.
3461 [2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc.
3462 [2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt.
3463 [2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt.
3464 [2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr.
3465 [2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr.
3466 [2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr.
3467 [2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr.
3468 [2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro.
3469 [2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro.
3470 [2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd.
3471 [2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd.
3472 [2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel.
3473 [2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel.
3474 [2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd.
3475 [2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd.
3476 [2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz.
3477 [2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz.
3478 [2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu.
3479 [2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu.
3480 [2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list.
3481 [2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list.
3482 [2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund.
3483 [2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund.
3484 [2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund.
3485 [2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund.
3486 [2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared.
3487 [2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared.
3488 [2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund.
3489 [2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund.
3490 [2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names.
3491 [2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names.
3492 [2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design.
3493 [2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design.
3494 [2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary.
3495 [2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary.
3496 [2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups.
3497 [2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups.
3498 [2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos.
3499 [2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos.
3500 [2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align.
3501 [2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align.
3502 [2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos.
3503 [2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos.
3504 [2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels.
3505 [2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels.
3506 [2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr.
3507 [2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr.
3508 [2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map.
3509 [2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map.
3510 [2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check.
3511 [2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check.
3512 [2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report.
3513 [2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report.
3514 [2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter.
3515 [2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter.
3516 [2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist.
3517 [2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist.
3518 [2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre.
3519 [2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre.
3520 [2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist.
3521 [2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist.
3522 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist.
3523 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist.
3524 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist.
3525 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist.
3526 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy.
3527 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy.
3528 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy.
3529 [2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy.
3530 [2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy.
3531 [2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy.
3532 [2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy.
3533 [2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy.
3534 [2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary.
3535 [2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary.
3536 [2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq.
3537 [2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq.
3538 [2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan.
3539 [2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan.
3540 [2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan.
3541 [2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan.
3542 [2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan.
3543 [2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan.
3544 [2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan.
3545 [2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan.
3546 [2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes.
3547 [2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes.
3548 [2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow.
3549 [2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow.
3550 [2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table.
3551 [2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table.
3552 [2024-04-17 17:40:25,511: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore.
3553 [2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore.
3554 [2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip.
3555 [2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip.
3556 [2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub.
3557 [2024-04-17 17:40:25,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub.
3558 [2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml.
3559 [2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml.
3560 [2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn.
3561 [2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn.
3562 [2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp.
3563 [2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp.
3564 [2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd.
3565 [2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd.
3566 [2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb.
3567 [2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb.
3568 [2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5.
3569 [2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5.
3570 [2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5.
3571 [2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5.
3572 [2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5.
3573 [2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5.
3574 [2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1.
3575 [2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1.
3576 [2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary.
3577 [2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary.
3578 [2024-04-17 17:40:25,518: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1.
3579 [2024-04-17 17:40:25,518: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1.
3580 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp.
3581 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp.
3582 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat.
3583 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat.
3584 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts.
3585 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts.
3586 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map.
3587 [2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map.
3588 [2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf.
3589 [2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf.
3590 [2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped.
3591 [2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped.
3592 [2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin.
3593 [2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin.
3594 [2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain.
3595 [2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain.
3596 [2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map.
3597 [2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map.
3598 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo.
3599 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo.
3600 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent.
3601 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent.
3602 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam.
3603 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam.
3604 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre.
3605 [2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre.
3606 [2024-04-17 17:40:25,523: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml.
3607 [2024-04-17 17:40:25,523: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml.
3608 [2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp.
3609 [2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp.
3610 [2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba.
3611 [2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba.
3612 [2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada.
3613 [2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada.
3614 [2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates.
3615 [2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates.
3616 [2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs.
3617 [2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs.
3618 [2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable.
3619 [2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable.
3620 [2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques.
3621 [2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques.
3622 [2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2.
3623 [2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2.
3624 [2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt.
3625 [2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt.
3626 [2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz.
3627 [2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz.
3628 [2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav.
3629 [2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav.
3630 [2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3.
3631 [2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3.
3632 [2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv.
3633 [2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv.
3634 [2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4.
3635 [2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4.
3636 [2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv.
3637 [2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv.
3638 [2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg.
3639 [2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg.
3640 [2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid.
3641 [2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid.
3642 [2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par.
3643 [2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par.
3644 [2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex.
3645 [2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex.
3646 [2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata.
3647 [2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata.
3648 [2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext.
3649 [2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext.
3650 [2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html.
3651 [2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html.
3652 [2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5.
3653 [2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5.
3654 [2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz.
3655 [2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz.
3656 [2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz.
3657 [2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz.
3658 [2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz.
3659 [2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz.
3660 [2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz.
3661 [2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz.
3662 [2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations.
3663 [2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations.
3664 [2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml.
3665 [2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml.
3666 [2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess.
3667 [2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess.
3668 [2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr.
3669 [2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr.
3670 [2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points.
3671 [2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points.
3672 [2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv.
3673 [2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv.
3674 [2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell.
3675 [2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell.
3676 [2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh.
3677 [2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh.
3678 [2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo.
3679 [2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo.
3680 [2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof.
3681 [2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof.
3682 [2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov.
3683 [2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov.
3684 [2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result.
3685 [2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result.
3686 [2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property.
3687 [2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property.
3688 [2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model.
3689 [2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model.
3690 [2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts.
3691 [2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts.
3692 [2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model.
3693 [2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model.
3694 [2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample.
3695 [2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample.
3696 [2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check.
3697 [2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check.
3698 [2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result.
3699 [2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result.
3700 [2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep.
3701 [2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep.
3702 [2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param.
3703 [2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param.
3704 [2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt.
3705 [2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt.
3706 [2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil.
3707 [2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil.
3708 [2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr.
3709 [2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr.
3710 [2024-04-17 17:40:25,544: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp.
3711 [2024-04-17 17:40:25,544: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp.
3712 [2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents'
3713 [2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents'
3714 [2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat'
3715 [2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat'
3716 [2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund'
3717 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund'
3718 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu'
3719 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu'
3720 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund'
3721 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund'
3722 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap'
3723 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap'
3724 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix'
3725 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix'
3726 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix'
3727 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix'
3728 [2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix'
3729 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix'
3730 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos'
3731 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos'
3732 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile'
3733 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile'
3734 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency'
3735 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency'
3736 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask'
3737 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask'
3738 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy'
3739 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy'
3740 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes'
3741 [2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes'
3742 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii'
3743 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii'
3744 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary'
3745 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary'
3746 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii'
3747 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii'
3748 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary'
3749 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary'
3750 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess'
3751 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess'
3752 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr'
3753 [2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr'
3754 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh'
3755 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh'
3756 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath'
3757 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath'
3758 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx'
3759 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx'
3760 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf'
3761 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf'
3762 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2'
3763 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2'
3764 [2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit'
3765 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit'
3766 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite'
3767 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite'
3768 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass'
3769 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass'
3770 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite'
3771 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite'
3772 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW'
3773 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW'
3774 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP'
3775 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP'
3776 [2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB'
3777 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB'
3778 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite'
3779 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite'
3780 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite'
3781 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite'
3782 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite'
3783 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite'
3784 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite'
3785 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite'
3786 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite'
3787 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite'
3788 [2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite'
3789 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite'
3790 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite'
3791 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite'
3792 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite'
3793 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite'
3794 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM'
3795 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM'
3796 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool'
3797 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool'
3798 [2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool'
3799 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool'
3800 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom'
3801 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom'
3802 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata'
3803 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata'
3804 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2'
3805 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2'
3806 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials'
3807 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials'
3808 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5'
3809 [2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5'
3810 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib'
3811 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib'
3812 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz'
3813 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz'
3814 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz'
3815 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz'
3816 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz'
3817 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz'
3818 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam'
3819 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam'
3820 [2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted'
3821 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted'
3822 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative'
3823 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative'
3824 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM'
3825 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM'
3826 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff'
3827 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff'
3828 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra'
3829 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra'
3830 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF'
3831 [2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF'
3832 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA'
3833 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA'
3834 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6'
3835 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6'
3836 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND'
3837 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND'
3838 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet'
3839 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet'
3840 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar'
3841 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar'
3842 [2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar'
3843 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar'
3844 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar'
3845 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar'
3846 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar'
3847 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar'
3848 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar'
3849 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar'
3850 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar'
3851 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar'
3852 [2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz'
3853 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz'
3854 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2'
3855 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2'
3856 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive'
3857 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive'
3858 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb'
3859 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb'
3860 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3'
3861 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3'
3862 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive'
3863 [2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive'
3864 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM'
3865 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM'
3866 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat'
3867 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat'
3868 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr'
3869 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr'
3870 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd'
3871 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd'
3872 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc'
3873 [2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc'
3874 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt'
3875 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt'
3876 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr'
3877 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr'
3878 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel'
3879 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel'
3880 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx'
3881 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx'
3882 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata'
3883 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata'
3884 [2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact'
3885 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact'
3886 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization'
3887 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization'
3888 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive'
3889 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive'
3890 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext'
3891 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext'
3892 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus'
3893 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus'
3894 [2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl'
3895 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl'
3896 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf'
3897 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf'
3898 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml'
3899 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml'
3900 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti'
3901 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti'
3902 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml'
3903 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml'
3904 [2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi'
3905 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi'
3906 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml'
3907 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml'
3908 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d'
3909 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d'
3910 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta'
3911 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta'
3912 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML'
3913 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML'
3914 [2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML'
3915 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML'
3916 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML'
3917 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML'
3918 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML'
3919 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML'
3920 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf'
3921 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf'
3922 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2'
3923 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2'
3924 [2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp'
3925 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp'
3926 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData'
3927 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData'
3928 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML'
3929 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML'
3930 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML'
3931 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML'
3932 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML'
3933 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML'
3934 [2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab'
3935 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab'
3936 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2'
3937 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2'
3938 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml'
3939 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml'
3940 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML'
3941 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML'
3942 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML'
3943 [2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML'
3944 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik'
3945 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik'
3946 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList'
3947 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList'
3948 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS'
3949 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS'
3950 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml'
3951 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml'
3952 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML'
3953 [2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML'
3954 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib'
3955 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib'
3956 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML'
3957 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML'
3958 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW'
3959 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW'
3960 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML'
3961 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML'
3962 [2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML'
3963 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML'
3964 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML'
3965 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML'
3966 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML'
3967 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML'
3968 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML'
3969 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML'
3970 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML'
3971 [2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML'
3972 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff'
3973 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff'
3974 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF'
3975 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF'
3976 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML'
3977 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML'
3978 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml'
3979 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml'
3980 [2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT'
3981 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT'
3982 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle'
3983 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle'
3984 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples'
3985 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples'
3986 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld'
3987 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld'
3988 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf'
3989 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf'
3990 [2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav'
3991 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav'
3992 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp'
3993 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp'
3994 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg'
3995 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg'
3996 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta'
3997 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta'
3998 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD'
3999 [2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD'
4000 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454'
4001 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454'
4002 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF'
4003 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF'
4004 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB'
4005 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB'
4006 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell'
4007 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell'
4008 [2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF'
4009 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF'
4010 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ'
4011 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ'
4012 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ'
4013 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ'
4014 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2'
4015 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2'
4016 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI'
4017 [2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI'
4018 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS'
4019 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS'
4020 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR'
4021 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR'
4022 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO'
4023 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO'
4024 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip'
4025 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip'
4026 [2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta'
4027 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta'
4028 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger'
4029 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger'
4030 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger'
4031 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger'
4032 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq'
4033 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq'
4034 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle'
4035 [2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle'
4036 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html'
4037 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html'
4038 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf'
4039 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf'
4040 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt'
4041 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt'
4042 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank'
4043 [2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank'
4044 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed'
4045 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed'
4046 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack'
4047 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack'
4048 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf'
4049 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf'
4050 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff'
4051 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff'
4052 [2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3'
4053 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3'
4054 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup'
4055 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup'
4056 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl'
4057 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl'
4058 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf'
4059 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf'
4060 [2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval'
4061 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval'
4062 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam'
4063 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam'
4064 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick'
4065 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick'
4066 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus'
4067 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus'
4068 [2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree'
4069 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree'
4070 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo'
4071 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo'
4072 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff'
4073 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff'
4074 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb'
4075 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb'
4076 [2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1'
4077 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1'
4078 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson'
4079 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson'
4080 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson'
4081 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson'
4082 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult'
4083 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult'
4084 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts'
4085 [2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts'
4086 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json'
4087 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json'
4088 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix'
4089 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix'
4090 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn'
4091 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn'
4092 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap'
4093 [2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap'
4094 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD'
4095 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD'
4096 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix'
4097 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix'
4098 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket'
4099 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket'
4100 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP'
4101 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP'
4102 [2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable'
4103 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable'
4104 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV'
4105 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV'
4106 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary'
4107 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary'
4108 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats'
4109 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats'
4110 [2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV'
4111 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV'
4112 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket'
4113 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket'
4114 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2'
4115 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2'
4116 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3'
4117 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3'
4118 [2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0'
4119 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0'
4120 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa'
4121 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa'
4122 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM'
4123 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM'
4124 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm'
4125 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm'
4126 [2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel'
4127 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel'
4128 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr'
4129 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr'
4130 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal'
4131 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal'
4132 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData'
4133 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData'
4134 [2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS'
4135 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS'
4136 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014'
4137 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014'
4138 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg'
4139 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg'
4140 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png'
4141 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png'
4142 [2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff'
4143 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff'
4144 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff'
4145 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff'
4146 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp'
4147 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp'
4148 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif'
4149 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif'
4150 [2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im'
4151 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im'
4152 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd'
4153 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd'
4154 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx'
4155 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx'
4156 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm'
4157 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm'
4158 [2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd'
4159 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd'
4160 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm'
4161 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm'
4162 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb'
4163 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb'
4164 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm'
4165 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm'
4166 [2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm'
4167 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm'
4168 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm'
4169 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm'
4170 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps'
4171 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps'
4172 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast'
4173 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast'
4174 [2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck'
4175 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck'
4176 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk'
4177 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk'
4178 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1'
4179 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1'
4180 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2'
4181 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2'
4182 [2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star'
4183 [2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star'
4184 [2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav'
4185 [2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav'
4186 [2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv'
4187 [2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv'
4188 [2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3'
4189 [2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3'
4190 [2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4'
4191 [2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4'
4192 [2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv'
4193 [2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv'
4194 [2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg'
4195 [2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg'
4196 [2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid'
4197 [2024-04-17 17:40:25,597: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid'
4198 [2024-04-17 17:40:25,597: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF'
4199 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF'
4200 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep'
4201 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep'
4202 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult'
4203 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult'
4204 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity'
4205 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity'
4206 [2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param'
4207 [2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param'
4208 [2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml'
4209 [2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml'
4210 [2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph'
4211 [2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph'
4212 [2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph'
4213 [2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph'
4214 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet'
4215 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet'
4216 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags'
4217 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags'
4218 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset'
4219 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset'
4220 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels'
4221 [2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels'
4222 [2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip'
4223 [2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip'
4224 [2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty'
4225 [2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty'
4226 [2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel'
4227 [2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel'
4228 [2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel'
4229 [2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel'
4230 [2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample'
4231 [2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample'
4232 [2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck'
4233 [2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck'
4234 [2024-04-17 17:40:25,615: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample].
4235 [2024-04-17 17:40:25,615: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample].
4236 [2024-04-17 17:40:25,615: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla']
4237 [2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla']
4238 [2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225']
4239 [2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt
4240 [2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt
4241 [2024-04-17 17:40:25,616: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample].
4242 [2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample
4243 [2024-04-17 17:40:25,616: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample].
4244 [2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample
4245 [2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225']
4246 [2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt
4247 [2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt
4248 [2024-04-17 17:40:25,617: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample].
4249 [2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample
4250 [2024-04-17 17:40:25,618: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample].
4251 [2024-04-17 17:40:25,618: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample
4252 [2024-04-17 17:40:25,618: DEBUG/main] Loading references to tool sheds from /scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml
4253 [2024-04-17 17:40:25,618: DEBUG/main] Loaded reference to tool shed: Target Shed
4254 [2024-04-17 17:40:25,620: DEBUG/main] Loading references to tool sheds from /scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml
4255 [2024-04-17 17:40:25,626: DEBUG/main] Loaded reference to tool shed: Target Shed
4256 [2024-04-17 17:40:25,637: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (5.570 ms)
4257 [2024-04-17 17:40:26,260: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (641.245 ms)
4258 [2024-04-17 17:40:27,787: INFO/main] Task galaxy.prune_history_audit_table[a53db5e6-3ad7-463e-9c71-58b0cca1e6f9] succeeded in 5.20867227204144s: None
4259 [2024-04-17 17:40:27,788: INFO/main] Task galaxy.cleanup_short_term_storage[9f43558c-252f-4782-a230-b3676057864b] succeeded in 5.188165600411594s: None
4260
4261 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4262 galaxy.util.task DEBUG 2024-04-17 17:40:45,655 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (16.622 ms)
4263
4264 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4265 [2024-04-17 17:45:22,376: DEBUG/MainProcess] beat: Synchronizing schedule...
4266 [2024-04-17 17:45:22,377: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4267 [2024-04-17 17:50:22,477: DEBUG/MainProcess] beat: Synchronizing schedule...
4268 [2024-04-17 17:50:22,478: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4269 [2024-04-17 17:55:22,578: DEBUG/MainProcess] beat: Synchronizing schedule...
4270 [2024-04-17 17:55:22,579: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4271 [2024-04-17 18:00:22,679: DEBUG/MainProcess] beat: Synchronizing schedule...
4272 [2024-04-17 18:00:22,680: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4273 [2024-04-17 18:05:22,777: DEBUG/MainProcess] beat: Synchronizing schedule...
4274 [2024-04-17 18:05:22,779: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4275 [2024-04-17 18:10:22,879: DEBUG/MainProcess] beat: Synchronizing schedule...
4276 [2024-04-17 18:10:22,880: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4277 [2024-04-17 18:15:22,981: DEBUG/MainProcess] beat: Synchronizing schedule...
4278 [2024-04-17 18:15:22,982: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4279 [2024-04-17 18:20:23,081: DEBUG/MainProcess] beat: Synchronizing schedule...
4280 [2024-04-17 18:20:23,082: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4281 [2024-04-17 18:25:23,182: DEBUG/MainProcess] beat: Synchronizing schedule...
4282 [2024-04-17 18:25:23,183: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4283
4284 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4285 galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 18:26:42,103 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 102620
4286 galaxy.jobs.runners.local DEBUG 2024-04-17 18:26:42,105 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/galaxy_4.sh
4287 galaxy.jobs DEBUG 2024-04-17 18:26:42,137 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/outputs/dataset_1d496340-1818-4e76-86a7-2b787301634c.dat to /scratch/rico/tmp/tmp12w4107b/files/1/d/4/dataset_1d496340-1818-4e76-86a7-2b787301634c.dat
4288 galaxy.model.metadata DEBUG 2024-04-17 18:26:42,183 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 5
4289 galaxy.jobs DEBUG 2024-04-17 18:26:42,246 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 4 executed (119.368 ms)
4290
4291 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4292 [2024-04-17 18:30:23,284: DEBUG/MainProcess] beat: Synchronizing schedule...
4293 [2024-04-17 18:30:23,285: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4294 [2024-04-17 18:35:23,385: DEBUG/MainProcess] beat: Synchronizing schedule...
4295 [2024-04-17 18:35:23,386: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4296 [2024-04-17 18:40:22,289: DEBUG/MainProcess] beat: Synchronizing schedule...
4297 [2024-04-17 18:40:22,291: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4298 [2024-04-17 18:40:22,305: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->23d46db2-021b-4a9a-bfe7-e19b74c40727
4299 [2024-04-17 18:40:22,305: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4300 [2024-04-17 18:40:22,313: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7
4301 [2024-04-17 18:40:22,313: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4302
4303 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4304 [2024-04-17 18:40:22,884: INFO/main] Task galaxy.prune_history_audit_table[23d46db2-021b-4a9a-bfe7-e19b74c40727] received
4305 [2024-04-17 18:40:22,885: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '23d46db2-021b-4a9a-bfe7-e19b74c40727', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '6fc8f858-fc5f-4147-89d3-311c0d4146f4'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4306 [2024-04-17 18:40:22,908: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (21.650 ms)
4307 [2024-04-17 18:40:22,908: INFO/main] Task galaxy.prune_history_audit_table[23d46db2-021b-4a9a-bfe7-e19b74c40727] succeeded in 0.02240056823939085s: None
4308 [2024-04-17 18:40:22,924: INFO/main] Task galaxy.cleanup_short_term_storage[ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7] received
4309 [2024-04-17 18:40:22,924: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '1801faf9-795d-4ceb-8695-daaae074cd23'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4310 [2024-04-17 18:40:22,926: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (1.141 ms)
4311 [2024-04-17 18:40:22,926: INFO/main] Task galaxy.cleanup_short_term_storage[ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7] succeeded in 0.0015790751203894615s: None
4312
4313 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4314 galaxy.util.task DEBUG 2024-04-17 18:40:45,672 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (16.467 ms)
4315
4316 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4317 [2024-04-17 18:45:22,413: DEBUG/MainProcess] beat: Synchronizing schedule...
4318 [2024-04-17 18:45:22,415: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4319 [2024-04-17 18:50:22,513: DEBUG/MainProcess] beat: Synchronizing schedule...
4320 [2024-04-17 18:50:22,515: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4321 [2024-04-17 18:55:22,615: DEBUG/MainProcess] beat: Synchronizing schedule...
4322 [2024-04-17 18:55:22,616: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4323 [2024-04-17 19:00:22,716: DEBUG/MainProcess] beat: Synchronizing schedule...
4324 [2024-04-17 19:00:22,718: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4325 [2024-04-17 19:05:22,818: DEBUG/MainProcess] beat: Synchronizing schedule...
4326 [2024-04-17 19:05:22,820: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4327 [2024-04-17 19:10:22,920: DEBUG/MainProcess] beat: Synchronizing schedule...
4328 [2024-04-17 19:10:22,921: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4329 [2024-04-17 19:15:23,022: DEBUG/MainProcess] beat: Synchronizing schedule...
4330 [2024-04-17 19:15:23,023: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4331 [2024-04-17 19:20:23,123: DEBUG/MainProcess] beat: Synchronizing schedule...
4332 [2024-04-17 19:20:23,125: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4333 [2024-04-17 19:25:23,225: DEBUG/MainProcess] beat: Synchronizing schedule...
4334 [2024-04-17 19:25:23,227: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4335 [2024-04-17 19:30:23,327: DEBUG/MainProcess] beat: Synchronizing schedule...
4336 [2024-04-17 19:30:23,328: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4337 [2024-04-17 19:35:23,428: DEBUG/MainProcess] beat: Synchronizing schedule...
4338 [2024-04-17 19:35:23,430: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4339 [2024-04-17 19:40:22,381: DEBUG/MainProcess] beat: Synchronizing schedule...
4340 [2024-04-17 19:40:22,383: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4341 [2024-04-17 19:40:22,397: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->db7a2df4-7068-4bdd-a894-61ccf279a411
4342 [2024-04-17 19:40:22,397: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4343 [2024-04-17 19:40:22,402: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->ca4a4fda-8edb-4c76-8a80-4522e0504d18
4344 [2024-04-17 19:40:22,403: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4345
4346 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4347 [2024-04-17 19:40:22,481: INFO/main] Task galaxy.prune_history_audit_table[db7a2df4-7068-4bdd-a894-61ccf279a411] received
4348 [2024-04-17 19:40:22,482: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'db7a2df4-7068-4bdd-a894-61ccf279a411', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '7ad4db53-22ef-478f-ac95-d3096db9ca8c'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4349 [2024-04-17 19:40:22,507: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (23.302 ms)
4350 [2024-04-17 19:40:22,508: INFO/main] Task galaxy.prune_history_audit_table[db7a2df4-7068-4bdd-a894-61ccf279a411] succeeded in 0.024009098298847675s: None
4351 [2024-04-17 19:40:22,520: INFO/main] Task galaxy.cleanup_short_term_storage[ca4a4fda-8edb-4c76-8a80-4522e0504d18] received
4352 [2024-04-17 19:40:22,520: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'ca87b97f-e4cf-4a0d-a3a8-1bf2668effc6'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4353 [2024-04-17 19:40:22,521: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.610 ms)
4354 [2024-04-17 19:40:22,522: INFO/main] Task galaxy.cleanup_short_term_storage[ca4a4fda-8edb-4c76-8a80-4522e0504d18] succeeded in 0.0010134056210517883s: None
4355
4356 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4357 galaxy.util.task DEBUG 2024-04-17 19:40:45,686 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.946 ms)
4358
4359 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4360 [2024-04-17 19:45:22,503: DEBUG/MainProcess] beat: Synchronizing schedule...
4361 [2024-04-17 19:45:22,505: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4362 [2024-04-17 19:50:22,508: DEBUG/MainProcess] beat: Synchronizing schedule...
4363 [2024-04-17 19:50:22,510: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4364 [2024-04-17 19:55:22,610: DEBUG/MainProcess] beat: Synchronizing schedule...
4365 [2024-04-17 19:55:22,611: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4366 [2024-04-17 20:00:22,669: DEBUG/MainProcess] beat: Synchronizing schedule...
4367 [2024-04-17 20:00:22,670: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4368 [2024-04-17 20:05:22,771: DEBUG/MainProcess] beat: Synchronizing schedule...
4369 [2024-04-17 20:05:22,773: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4370 [2024-04-17 20:10:22,873: DEBUG/MainProcess] beat: Synchronizing schedule...
4371 [2024-04-17 20:10:22,874: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4372 [2024-04-17 20:15:22,974: DEBUG/MainProcess] beat: Synchronizing schedule...
4373 [2024-04-17 20:15:22,976: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4374 [2024-04-17 20:20:22,996: DEBUG/MainProcess] beat: Synchronizing schedule...
4375 [2024-04-17 20:20:22,998: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4376 [2024-04-17 20:25:23,059: DEBUG/MainProcess] beat: Synchronizing schedule...
4377 [2024-04-17 20:25:23,060: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4378 [2024-04-17 20:30:23,068: DEBUG/MainProcess] beat: Synchronizing schedule...
4379 [2024-04-17 20:30:23,070: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4380 [2024-04-17 20:35:23,170: DEBUG/MainProcess] beat: Synchronizing schedule...
4381 [2024-04-17 20:35:23,172: DEBUG/MainProcess] beat: Waking up in 4.99 minutes.
4382 [2024-04-17 20:40:22,473: DEBUG/MainProcess] beat: Synchronizing schedule...
4383 [2024-04-17 20:40:22,475: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4384 [2024-04-17 20:40:22,490: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->e8ddf705-776f-4c84-b80e-bb18f38cad75
4385 [2024-04-17 20:40:22,490: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4386 [2024-04-17 20:40:22,498: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->1aefecb8-332b-40d6-b213-aa1c690d56a8
4387 [2024-04-17 20:40:22,498: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4388
4389 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4390 [2024-04-17 20:40:23,028: INFO/main] Task galaxy.prune_history_audit_table[e8ddf705-776f-4c84-b80e-bb18f38cad75] received
4391 [2024-04-17 20:40:23,029: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'e8ddf705-776f-4c84-b80e-bb18f38cad75', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '1d81c90e-96c6-4243-abb7-946fdb2e2571'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4392 [2024-04-17 20:40:23,049: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (18.926 ms)
4393 [2024-04-17 20:40:23,050: INFO/main] Task galaxy.prune_history_audit_table[e8ddf705-776f-4c84-b80e-bb18f38cad75] succeeded in 0.01952252257615328s: None
4394 [2024-04-17 20:40:23,065: INFO/main] Task galaxy.cleanup_short_term_storage[1aefecb8-332b-40d6-b213-aa1c690d56a8] received
4395 [2024-04-17 20:40:23,065: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '1aefecb8-332b-40d6-b213-aa1c690d56a8', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '32f5a1d2-1ae8-4494-a803-3ac7fddeba4b'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4396 [2024-04-17 20:40:23,067: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.666 ms)
4397 [2024-04-17 20:40:23,067: INFO/main] Task galaxy.cleanup_short_term_storage[1aefecb8-332b-40d6-b213-aa1c690d56a8] succeeded in 0.0010927561670541763s: None
4398
4399 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4400 galaxy.util.task DEBUG 2024-04-17 20:40:45,699 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.266 ms)
4401
4402 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4403 [2024-04-17 20:45:22,501: DEBUG/MainProcess] beat: Synchronizing schedule...
4404 [2024-04-17 20:45:22,503: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4405 [2024-04-17 20:50:22,509: DEBUG/MainProcess] beat: Synchronizing schedule...
4406 [2024-04-17 20:50:22,510: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4407 [2024-04-17 20:55:22,611: DEBUG/MainProcess] beat: Synchronizing schedule...
4408 [2024-04-17 20:55:22,612: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4409 [2024-04-17 21:00:22,620: DEBUG/MainProcess] beat: Synchronizing schedule...
4410 [2024-04-17 21:00:22,622: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4411 [2024-04-17 21:05:22,722: DEBUG/MainProcess] beat: Synchronizing schedule...
4412 [2024-04-17 21:05:22,724: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4413 [2024-04-17 21:10:22,824: DEBUG/MainProcess] beat: Synchronizing schedule...
4414 [2024-04-17 21:10:22,826: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4415 [2024-04-17 21:15:22,926: DEBUG/MainProcess] beat: Synchronizing schedule...
4416 [2024-04-17 21:15:22,928: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4417 [2024-04-17 21:20:23,028: DEBUG/MainProcess] beat: Synchronizing schedule...
4418 [2024-04-17 21:20:23,030: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4419 [2024-04-17 21:25:23,130: DEBUG/MainProcess] beat: Synchronizing schedule...
4420 [2024-04-17 21:25:23,132: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4421 [2024-04-17 21:30:23,232: DEBUG/MainProcess] beat: Synchronizing schedule...
4422 [2024-04-17 21:30:23,234: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4423 [2024-04-17 21:35:23,334: DEBUG/MainProcess] beat: Synchronizing schedule...
4424 [2024-04-17 21:35:23,335: DEBUG/MainProcess] beat: Waking up in 4.99 minutes.
4425 [2024-04-17 21:40:22,565: DEBUG/MainProcess] beat: Synchronizing schedule...
4426 [2024-04-17 21:40:22,567: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4427 [2024-04-17 21:40:22,591: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->7f7da24d-3a93-4bc9-9348-9da8dc7f88d6
4428 [2024-04-17 21:40:22,592: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4429 [2024-04-17 21:40:22,603: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->8bacded8-77ed-42b3-a237-a36afe528a0f
4430 [2024-04-17 21:40:22,604: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4431
4432 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4433 [2024-04-17 21:40:22,990: INFO/main] Task galaxy.prune_history_audit_table[7f7da24d-3a93-4bc9-9348-9da8dc7f88d6] received
4434 [2024-04-17 21:40:22,991: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3b3a686e-0ea6-4d27-9647-7f951444b466'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4435 [2024-04-17 21:40:23,025: INFO/main] Task galaxy.cleanup_short_term_storage[8bacded8-77ed-42b3-a237-a36afe528a0f] received
4436 [2024-04-17 21:40:23,026: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '8bacded8-77ed-42b3-a237-a36afe528a0f', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '367f05e1-381e-43f4-a1d3-80e9f4a7b869'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4437 [2024-04-17 21:40:23,027: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.575 ms)
4438 [2024-04-17 21:40:23,028: INFO/main] Task galaxy.cleanup_short_term_storage[8bacded8-77ed-42b3-a237-a36afe528a0f] succeeded in 0.0011010067537426949s: None
4439 [2024-04-17 21:40:23,031: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (38.911 ms)
4440 [2024-04-17 21:40:23,031: INFO/main] Task galaxy.prune_history_audit_table[7f7da24d-3a93-4bc9-9348-9da8dc7f88d6] succeeded in 0.0397188663482666s: None
4441
4442 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4443 galaxy.util.task DEBUG 2024-04-17 21:40:45,719 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (19.607 ms)
4444
4445 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4446 [2024-04-17 21:45:22,704: DEBUG/MainProcess] beat: Synchronizing schedule...
4447 [2024-04-17 21:45:22,705: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4448 [2024-04-17 21:50:22,805: DEBUG/MainProcess] beat: Synchronizing schedule...
4449 [2024-04-17 21:50:22,806: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4450 [2024-04-17 21:55:22,907: DEBUG/MainProcess] beat: Synchronizing schedule...
4451 [2024-04-17 21:55:22,908: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4452 [2024-04-17 22:00:23,009: DEBUG/MainProcess] beat: Synchronizing schedule...
4453 [2024-04-17 22:00:23,010: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4454 [2024-04-17 22:05:23,111: DEBUG/MainProcess] beat: Synchronizing schedule...
4455 [2024-04-17 22:05:23,113: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4456 [2024-04-17 22:10:23,213: DEBUG/MainProcess] beat: Synchronizing schedule...
4457 [2024-04-17 22:10:23,214: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4458 [2024-04-17 22:15:23,315: DEBUG/MainProcess] beat: Synchronizing schedule...
4459 [2024-04-17 22:15:23,316: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4460 [2024-04-17 22:20:23,416: DEBUG/MainProcess] beat: Synchronizing schedule...
4461 [2024-04-17 22:20:23,418: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4462 [2024-04-17 22:25:23,519: DEBUG/MainProcess] beat: Synchronizing schedule...
4463 [2024-04-17 22:25:23,520: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4464 [2024-04-17 22:30:23,620: DEBUG/MainProcess] beat: Synchronizing schedule...
4465 [2024-04-17 22:30:23,622: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4466 [2024-04-17 22:35:23,723: DEBUG/MainProcess] beat: Synchronizing schedule...
4467 [2024-04-17 22:35:23,724: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4468 [2024-04-17 22:40:22,657: DEBUG/MainProcess] beat: Synchronizing schedule...
4469 [2024-04-17 22:40:22,659: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4470 [2024-04-17 22:40:22,675: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->ad2db487-0ea1-43f4-84fa-7442fd8a5e12
4471 [2024-04-17 22:40:22,675: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4472 [2024-04-17 22:40:22,683: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->03da7b60-f8e9-454d-a50d-05a6da16fa64
4473 [2024-04-17 22:40:22,684: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4474
4475 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4476 [2024-04-17 22:40:23,291: INFO/main] Task galaxy.prune_history_audit_table[ad2db487-0ea1-43f4-84fa-7442fd8a5e12] received
4477 [2024-04-17 22:40:23,295: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'ad285130-05f8-4cc7-903c-e6e90ecc1fb8'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4478 [2024-04-17 22:40:23,322: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (25.857 ms)
4479 [2024-04-17 22:40:23,323: INFO/main] Task galaxy.prune_history_audit_table[ad2db487-0ea1-43f4-84fa-7442fd8a5e12] succeeded in 0.02652161754667759s: None
4480 [2024-04-17 22:40:23,330: INFO/main] Task galaxy.cleanup_short_term_storage[03da7b60-f8e9-454d-a50d-05a6da16fa64] received
4481 [2024-04-17 22:40:23,330: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '03da7b60-f8e9-454d-a50d-05a6da16fa64', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '2014ace3-bd75-456c-bc81-308cb28ed3c3'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4482 [2024-04-17 22:40:23,332: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.579 ms)
4483 [2024-04-17 22:40:23,332: INFO/main] Task galaxy.cleanup_short_term_storage[03da7b60-f8e9-454d-a50d-05a6da16fa64] succeeded in 0.0010370416566729546s: None
4484
4485 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4486 galaxy.util.task DEBUG 2024-04-17 22:40:45,733 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (14.014 ms)
4487
4488 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4489 [2024-04-17 22:45:22,784: DEBUG/MainProcess] beat: Synchronizing schedule...
4490 [2024-04-17 22:45:22,786: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4491 [2024-04-17 22:50:22,886: DEBUG/MainProcess] beat: Synchronizing schedule...
4492 [2024-04-17 22:50:22,888: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4493 [2024-04-17 22:55:22,985: DEBUG/MainProcess] beat: Synchronizing schedule...
4494 [2024-04-17 22:55:22,987: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4495 [2024-04-17 23:00:23,088: DEBUG/MainProcess] beat: Synchronizing schedule...
4496 [2024-04-17 23:00:23,090: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4497 [2024-04-17 23:05:23,190: DEBUG/MainProcess] beat: Synchronizing schedule...
4498 [2024-04-17 23:05:23,191: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4499 [2024-04-17 23:10:23,291: DEBUG/MainProcess] beat: Synchronizing schedule...
4500 [2024-04-17 23:10:23,293: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4501 [2024-04-17 23:15:23,394: DEBUG/MainProcess] beat: Synchronizing schedule...
4502 [2024-04-17 23:15:23,395: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4503 [2024-04-17 23:20:23,495: DEBUG/MainProcess] beat: Synchronizing schedule...
4504 [2024-04-17 23:20:23,497: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4505 [2024-04-17 23:25:23,597: DEBUG/MainProcess] beat: Synchronizing schedule...
4506 [2024-04-17 23:25:23,599: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4507 [2024-04-17 23:30:23,700: DEBUG/MainProcess] beat: Synchronizing schedule...
4508 [2024-04-17 23:30:23,701: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4509 [2024-04-17 23:35:23,801: DEBUG/MainProcess] beat: Synchronizing schedule...
4510 [2024-04-17 23:35:23,803: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4511 [2024-04-17 23:40:22,750: DEBUG/MainProcess] beat: Synchronizing schedule...
4512 [2024-04-17 23:40:22,752: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4513 [2024-04-17 23:40:22,767: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->7c97376c-f7d0-486e-98b2-bf5ca47fe0a5
4514 [2024-04-17 23:40:22,767: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4515 [2024-04-17 23:40:22,776: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->a9bc1f52-3052-47bb-bf10-486991139423
4516 [2024-04-17 23:40:22,776: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4517
4518 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4519 [2024-04-17 23:40:23,257: INFO/main] Task galaxy.prune_history_audit_table[7c97376c-f7d0-486e-98b2-bf5ca47fe0a5] received
4520 [2024-04-17 23:40:23,257: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '4af19dee-e25a-49b9-b1a2-6605d3451c15'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4521 [2024-04-17 23:40:23,285: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (26.131 ms)
4522 [2024-04-17 23:40:23,286: INFO/main] Task galaxy.prune_history_audit_table[7c97376c-f7d0-486e-98b2-bf5ca47fe0a5] succeeded in 0.02692567929625511s: None
4523 [2024-04-17 23:40:23,298: INFO/main] Task galaxy.cleanup_short_term_storage[a9bc1f52-3052-47bb-bf10-486991139423] received
4524 [2024-04-17 23:40:23,298: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'a9bc1f52-3052-47bb-bf10-486991139423', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'f7771e7e-90db-4cdc-8cd9-18e70a3fa746'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4525 [2024-04-17 23:40:23,300: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.567 ms)
4526 [2024-04-17 23:40:23,300: INFO/main] Task galaxy.cleanup_short_term_storage[a9bc1f52-3052-47bb-bf10-486991139423] succeeded in 0.0010050693526864052s: None
4527
4528 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4529 galaxy.util.task DEBUG 2024-04-17 23:40:45,747 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.534 ms)
4530
4531 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4532 [2024-04-17 23:45:22,877: DEBUG/MainProcess] beat: Synchronizing schedule...
4533 [2024-04-17 23:45:22,878: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4534 [2024-04-17 23:50:22,978: DEBUG/MainProcess] beat: Synchronizing schedule...
4535 [2024-04-17 23:50:22,980: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4536 [2024-04-17 23:55:23,081: DEBUG/MainProcess] beat: Synchronizing schedule...
4537 [2024-04-17 23:55:23,082: DEBUG/MainProcess] beat: Waking up in 4.62 minutes.
4538 [2024-04-18 00:00:00,090: DEBUG/MainProcess] beat: Synchronizing schedule...
4539 [2024-04-18 00:00:00,091: INFO/MainProcess] Scheduler: Sending due task celery.backend_cleanup (celery.backend_cleanup)
4540 [2024-04-18 00:00:00,103: DEBUG/MainProcess] celery.backend_cleanup sent. id->6f922e02-085e-49f1-a998-1f04c7632b56
4541 [2024-04-18 00:00:00,103: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4542
4543 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4544 [2024-04-18 00:00:00,221: INFO/main] Task celery.backend_cleanup[6f922e02-085e-49f1-a998-1f04c7632b56] received
4545 [2024-04-18 00:00:00,221: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('celery.backend_cleanup', '6f922e02-085e-49f1-a998-1f04c7632b56', {'lang': 'py', 'task': 'celery.backend_cleanup', 'id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'shadow': None, 'eta': None, 'expires': '2024-04-18T16:00:00.092245+00:00', 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'expiration': '43200000', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'bc9c5721-a9cf-4a13-b510-4ec7fa01063e'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal',... kwargs:{})
4546 [2024-04-18 00:00:00,223: INFO/main] Task celery.backend_cleanup[6f922e02-085e-49f1-a998-1f04c7632b56] succeeded in 0.0004079369828104973s: None
4547
4548 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4549 [2024-04-18 00:05:00,204: DEBUG/MainProcess] beat: Synchronizing schedule...
4550 [2024-04-18 00:05:00,205: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4551 [2024-04-18 00:10:00,306: DEBUG/MainProcess] beat: Synchronizing schedule...
4552 [2024-04-18 00:10:00,307: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4553 [2024-04-18 00:15:00,408: DEBUG/MainProcess] beat: Synchronizing schedule...
4554 [2024-04-18 00:15:00,409: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4555 [2024-04-18 00:20:00,510: DEBUG/MainProcess] beat: Synchronizing schedule...
4556 [2024-04-18 00:20:00,511: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4557 [2024-04-18 00:25:00,611: DEBUG/MainProcess] beat: Synchronizing schedule...
4558 [2024-04-18 00:25:00,613: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4559 [2024-04-18 00:30:00,713: DEBUG/MainProcess] beat: Synchronizing schedule...
4560 [2024-04-18 00:30:00,715: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4561 [2024-04-18 00:35:00,815: DEBUG/MainProcess] beat: Synchronizing schedule...
4562 [2024-04-18 00:35:00,817: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4563 [2024-04-18 00:40:00,917: DEBUG/MainProcess] beat: Synchronizing schedule...
4564 [2024-04-18 00:40:00,919: DEBUG/MainProcess] beat: Waking up in 21.82 seconds.
4565 [2024-04-18 00:40:22,764: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4566 [2024-04-18 00:40:22,782: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba
4567 [2024-04-18 00:40:22,782: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4568 [2024-04-18 00:40:22,791: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->bf653ea1-7409-4dfc-9966-dcaf49fad190
4569 [2024-04-18 00:40:22,791: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4570
4571 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4572 [2024-04-18 00:40:23,126: INFO/main] Task galaxy.prune_history_audit_table[8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba] received
4573 [2024-04-18 00:40:23,126: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'a418f92f-f78f-4db9-a894-9edc03b9ccfd'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4574 [2024-04-18 00:40:23,158: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (29.530 ms)
4575 [2024-04-18 00:40:23,159: INFO/main] Task galaxy.prune_history_audit_table[8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba] succeeded in 0.0302895437926054s: None
4576 [2024-04-18 00:40:23,174: INFO/main] Task galaxy.cleanup_short_term_storage[bf653ea1-7409-4dfc-9966-dcaf49fad190] received
4577 [2024-04-18 00:40:23,174: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'bf653ea1-7409-4dfc-9966-dcaf49fad190', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '43aad420-d1ad-428f-8393-13c09eddce76'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4578 [2024-04-18 00:40:23,176: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.578 ms)
4579 [2024-04-18 00:40:23,176: INFO/main] Task galaxy.cleanup_short_term_storage[bf653ea1-7409-4dfc-9966-dcaf49fad190] succeeded in 0.0010311566293239594s: None
4580
4581 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4582 galaxy.util.task DEBUG 2024-04-18 00:40:45,759 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (11.739 ms)
4583
4584 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4585 [2024-04-18 00:45:22,892: DEBUG/MainProcess] beat: Synchronizing schedule...
4586 [2024-04-18 00:45:22,894: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4587 [2024-04-18 00:50:22,993: DEBUG/MainProcess] beat: Synchronizing schedule...
4588 [2024-04-18 00:50:22,995: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4589 [2024-04-18 00:55:23,095: DEBUG/MainProcess] beat: Synchronizing schedule...
4590 [2024-04-18 00:55:23,101: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4591 [2024-04-18 01:00:23,201: DEBUG/MainProcess] beat: Synchronizing schedule...
4592 [2024-04-18 01:00:23,204: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4593 [2024-04-18 01:05:23,304: DEBUG/MainProcess] beat: Synchronizing schedule...
4594 [2024-04-18 01:05:23,306: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4595 [2024-04-18 01:10:23,308: DEBUG/MainProcess] beat: Synchronizing schedule...
4596 [2024-04-18 01:10:23,311: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4597 [2024-04-18 01:15:23,380: DEBUG/MainProcess] beat: Synchronizing schedule...
4598 [2024-04-18 01:15:23,382: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4599 [2024-04-18 01:20:23,429: DEBUG/MainProcess] beat: Synchronizing schedule...
4600 [2024-04-18 01:20:23,431: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4601 [2024-04-18 01:25:23,453: DEBUG/MainProcess] beat: Synchronizing schedule...
4602 [2024-04-18 01:25:23,455: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4603 [2024-04-18 01:30:23,555: DEBUG/MainProcess] beat: Synchronizing schedule...
4604 [2024-04-18 01:30:23,557: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4605 [2024-04-18 01:35:23,658: DEBUG/MainProcess] beat: Synchronizing schedule...
4606 [2024-04-18 01:35:23,660: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4607 [2024-04-18 01:40:22,854: DEBUG/MainProcess] beat: Synchronizing schedule...
4608 [2024-04-18 01:40:22,856: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4609 [2024-04-18 01:40:22,872: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->541cdee3-933e-4240-8f64-74d0dde00372
4610 [2024-04-18 01:40:22,872: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4611 [2024-04-18 01:40:22,880: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->6f53829a-a597-4c4c-954b-0a7b1edd452c
4612 [2024-04-18 01:40:22,880: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4613
4614 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4615 [2024-04-18 01:40:23,215: INFO/main] Task galaxy.prune_history_audit_table[541cdee3-933e-4240-8f64-74d0dde00372] received
4616 [2024-04-18 01:40:23,215: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '541cdee3-933e-4240-8f64-74d0dde00372', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '541cdee3-933e-4240-8f64-74d0dde00372', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '541cdee3-933e-4240-8f64-74d0dde00372', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '541cdee3-933e-4240-8f64-74d0dde00372', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '2e33c393-cb9a-4f7a-9a21-6ac307cbc3fe'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '541cdee3-933e-4240-8f64-74d0dde00372', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4617 [2024-04-18 01:40:23,234: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (17.088 ms)
4618 [2024-04-18 01:40:23,234: INFO/main] Task galaxy.prune_history_audit_table[541cdee3-933e-4240-8f64-74d0dde00372] succeeded in 0.017524080350995064s: None
4619 [2024-04-18 01:40:23,252: INFO/main] Task galaxy.cleanup_short_term_storage[6f53829a-a597-4c4c-954b-0a7b1edd452c] received
4620 [2024-04-18 01:40:23,252: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '6f53829a-a597-4c4c-954b-0a7b1edd452c', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '5f6aa794-c1a3-467e-9df2-6bb0afadb4a3'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4621 [2024-04-18 01:40:23,254: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.482 ms)
4622 [2024-04-18 01:40:23,254: INFO/main] Task galaxy.cleanup_short_term_storage[6f53829a-a597-4c4c-954b-0a7b1edd452c] succeeded in 0.0008354252204298973s: None
4623
4624 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4625 galaxy.util.task DEBUG 2024-04-18 01:40:45,774 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (14.047 ms)
4626
4627 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4628 [2024-04-18 01:45:22,973: DEBUG/MainProcess] beat: Synchronizing schedule...
4629 [2024-04-18 01:45:22,975: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4630 [2024-04-18 01:50:23,076: DEBUG/MainProcess] beat: Synchronizing schedule...
4631 [2024-04-18 01:50:23,077: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4632 [2024-04-18 01:55:23,177: DEBUG/MainProcess] beat: Synchronizing schedule...
4633 [2024-04-18 01:55:23,180: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4634 [2024-04-18 02:00:23,280: DEBUG/MainProcess] beat: Synchronizing schedule...
4635 [2024-04-18 02:00:23,282: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4636 [2024-04-18 02:05:23,382: DEBUG/MainProcess] beat: Synchronizing schedule...
4637 [2024-04-18 02:05:23,383: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4638 [2024-04-18 02:10:23,484: DEBUG/MainProcess] beat: Synchronizing schedule...
4639 [2024-04-18 02:10:23,486: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4640 [2024-04-18 02:15:23,586: DEBUG/MainProcess] beat: Synchronizing schedule...
4641 [2024-04-18 02:15:23,587: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4642 [2024-04-18 02:20:23,659: DEBUG/MainProcess] beat: Synchronizing schedule...
4643 [2024-04-18 02:20:23,661: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4644 [2024-04-18 02:25:23,761: DEBUG/MainProcess] beat: Synchronizing schedule...
4645 [2024-04-18 02:25:23,762: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4646 [2024-04-18 02:30:23,863: DEBUG/MainProcess] beat: Synchronizing schedule...
4647 [2024-04-18 02:30:23,864: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4648 [2024-04-18 02:35:23,885: DEBUG/MainProcess] beat: Synchronizing schedule...
4649 [2024-04-18 02:35:23,887: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4650 [2024-04-18 02:40:22,946: DEBUG/MainProcess] beat: Synchronizing schedule...
4651 [2024-04-18 02:40:22,948: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4652 [2024-04-18 02:40:22,962: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->eccc1d44-8734-44da-b894-bf09e7b73151
4653 [2024-04-18 02:40:22,962: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4654 [2024-04-18 02:40:22,969: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->3a2ba05d-5889-423f-ae9b-f5259186bc0c
4655 [2024-04-18 02:40:22,970: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4656
4657 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4658 [2024-04-18 02:40:23,026: INFO/main] Task galaxy.prune_history_audit_table[eccc1d44-8734-44da-b894-bf09e7b73151] received
4659 [2024-04-18 02:40:23,026: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'eccc1d44-8734-44da-b894-bf09e7b73151', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '10b90769-fd04-4bde-a13a-9a8656bfc4e9'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4660 [2024-04-18 02:40:23,052: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (21.478 ms)
4661 [2024-04-18 02:40:23,052: INFO/main] Task galaxy.prune_history_audit_table[eccc1d44-8734-44da-b894-bf09e7b73151] succeeded in 0.023734571412205696s: None
4662 [2024-04-18 02:40:23,063: INFO/main] Task galaxy.cleanup_short_term_storage[3a2ba05d-5889-423f-ae9b-f5259186bc0c] received
4663 [2024-04-18 02:40:23,063: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '3a2ba05d-5889-423f-ae9b-f5259186bc0c', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'ba9a3243-b86f-4e7b-a049-7e143c4d6d99'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4664 [2024-04-18 02:40:23,067: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (2.206 ms)
4665 [2024-04-18 02:40:23,067: INFO/main] Task galaxy.cleanup_short_term_storage[3a2ba05d-5889-423f-ae9b-f5259186bc0c] succeeded in 0.002620689570903778s: None
4666
4667 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4668 galaxy.util.task DEBUG 2024-04-18 02:40:45,786 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.200 ms)
4669
4670 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4671 [2024-04-18 02:45:23,070: DEBUG/MainProcess] beat: Synchronizing schedule...
4672 [2024-04-18 02:45:23,072: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4673 [2024-04-18 02:50:23,172: DEBUG/MainProcess] beat: Synchronizing schedule...
4674 [2024-04-18 02:50:23,173: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4675 [2024-04-18 02:55:23,273: DEBUG/MainProcess] beat: Synchronizing schedule...
4676 [2024-04-18 02:55:23,275: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4677 [2024-04-18 03:00:23,373: DEBUG/MainProcess] beat: Synchronizing schedule...
4678 [2024-04-18 03:00:23,375: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4679 [2024-04-18 03:05:23,381: DEBUG/MainProcess] beat: Synchronizing schedule...
4680 [2024-04-18 03:05:23,383: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4681 [2024-04-18 03:10:23,453: DEBUG/MainProcess] beat: Synchronizing schedule...
4682 [2024-04-18 03:10:23,455: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4683 [2024-04-18 03:15:23,481: DEBUG/MainProcess] beat: Synchronizing schedule...
4684 [2024-04-18 03:15:23,483: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4685 [2024-04-18 03:20:23,584: DEBUG/MainProcess] beat: Synchronizing schedule...
4686 [2024-04-18 03:20:23,586: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4687 [2024-04-18 03:25:23,593: DEBUG/MainProcess] beat: Synchronizing schedule...
4688 [2024-04-18 03:25:23,595: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4689 [2024-04-18 03:30:23,659: DEBUG/MainProcess] beat: Synchronizing schedule...
4690 [2024-04-18 03:30:23,662: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4691 [2024-04-18 03:35:23,762: DEBUG/MainProcess] beat: Synchronizing schedule...
4692 [2024-04-18 03:35:23,764: DEBUG/MainProcess] beat: Waking up in 4.99 minutes.
4693 [2024-04-18 03:40:23,039: DEBUG/MainProcess] beat: Synchronizing schedule...
4694 [2024-04-18 03:40:23,040: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4695 [2024-04-18 03:40:23,077: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->b4261d3c-7485-4b1e-8820-49a0384e2597
4696 [2024-04-18 03:40:23,078: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4697 [2024-04-18 03:40:23,119: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->8dc2bcbe-e093-41ee-af87-22815e238aa9
4698 [2024-04-18 03:40:23,120: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4699
4700 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4701 [2024-04-18 03:40:23,136: INFO/main] Task galaxy.prune_history_audit_table[b4261d3c-7485-4b1e-8820-49a0384e2597] received
4702 [2024-04-18 03:40:23,136: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'b4261d3c-7485-4b1e-8820-49a0384e2597', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '5c587ed4-b4b0-471a-a5c4-2d837c3ede48'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4703 [2024-04-18 03:40:23,165: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (26.351 ms)
4704 [2024-04-18 03:40:23,165: INFO/main] Task galaxy.prune_history_audit_table[b4261d3c-7485-4b1e-8820-49a0384e2597] succeeded in 0.027185991406440735s: None
4705 [2024-04-18 03:40:23,183: INFO/main] Task galaxy.cleanup_short_term_storage[8dc2bcbe-e093-41ee-af87-22815e238aa9] received
4706 [2024-04-18 03:40:23,183: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '8dc2bcbe-e093-41ee-af87-22815e238aa9', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'e3d8d8c0-e5c9-448e-8e5f-0c9691847758'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4707 [2024-04-18 03:40:23,185: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.724 ms)
4708 [2024-04-18 03:40:23,186: INFO/main] Task galaxy.cleanup_short_term_storage[8dc2bcbe-e093-41ee-af87-22815e238aa9] succeeded in 0.0011645713821053505s: None
4709
4710 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4711 galaxy.util.task DEBUG 2024-04-18 03:40:45,799 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (11.776 ms)
4712
4713 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4714 [2024-04-18 03:45:23,220: DEBUG/MainProcess] beat: Synchronizing schedule...
4715 [2024-04-18 03:45:23,222: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4716 [2024-04-18 03:50:23,322: DEBUG/MainProcess] beat: Synchronizing schedule...
4717 [2024-04-18 03:50:23,324: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4718 [2024-04-18 03:55:23,425: DEBUG/MainProcess] beat: Synchronizing schedule...
4719 [2024-04-18 03:55:23,427: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4720 [2024-04-18 04:00:23,527: DEBUG/MainProcess] beat: Synchronizing schedule...
4721 [2024-04-18 04:00:23,529: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4722 [2024-04-18 04:05:23,630: DEBUG/MainProcess] beat: Synchronizing schedule...
4723 [2024-04-18 04:05:23,631: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4724 [2024-04-18 04:10:23,732: DEBUG/MainProcess] beat: Synchronizing schedule...
4725 [2024-04-18 04:10:23,734: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4726 [2024-04-18 04:15:23,739: DEBUG/MainProcess] beat: Synchronizing schedule...
4727 [2024-04-18 04:15:23,741: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4728 [2024-04-18 04:20:23,842: DEBUG/MainProcess] beat: Synchronizing schedule...
4729 [2024-04-18 04:20:23,844: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4730 [2024-04-18 04:25:23,944: DEBUG/MainProcess] beat: Synchronizing schedule...
4731 [2024-04-18 04:25:23,946: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4732 [2024-04-18 04:30:23,995: DEBUG/MainProcess] beat: Synchronizing schedule...
4733 [2024-04-18 04:30:23,996: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4734 [2024-04-18 04:35:24,097: DEBUG/MainProcess] beat: Synchronizing schedule...
4735 [2024-04-18 04:35:24,099: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4736 [2024-04-18 04:40:23,131: DEBUG/MainProcess] beat: Synchronizing schedule...
4737 [2024-04-18 04:40:23,133: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4738 [2024-04-18 04:40:23,148: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->f2234281-c0ed-401a-a539-f628dee016e7
4739 [2024-04-18 04:40:23,148: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4740 [2024-04-18 04:40:23,157: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->74a34f0a-f180-4fe6-8414-ca8948a758ef
4741 [2024-04-18 04:40:23,157: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4742
4743 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4744 [2024-04-18 04:40:24,049: INFO/main] Task galaxy.prune_history_audit_table[f2234281-c0ed-401a-a539-f628dee016e7] received
4745 [2024-04-18 04:40:24,049: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'f2234281-c0ed-401a-a539-f628dee016e7', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '37f610fc-1840-4bbe-8790-b74e9f337092'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4746 [2024-04-18 04:40:24,078: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (27.061 ms)
4747 [2024-04-18 04:40:24,079: INFO/main] Task galaxy.prune_history_audit_table[f2234281-c0ed-401a-a539-f628dee016e7] succeeded in 0.027672781608998775s: None
4748 [2024-04-18 04:40:24,090: INFO/main] Task galaxy.cleanup_short_term_storage[74a34f0a-f180-4fe6-8414-ca8948a758ef] received
4749 [2024-04-18 04:40:24,090: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '74a34f0a-f180-4fe6-8414-ca8948a758ef', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '943c746c-554d-4557-a747-709a41f1f1ca'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4750 [2024-04-18 04:40:24,092: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.507 ms)
4751 [2024-04-18 04:40:24,092: INFO/main] Task galaxy.cleanup_short_term_storage[74a34f0a-f180-4fe6-8414-ca8948a758ef] succeeded in 0.0008853832259774208s: None
4752
4753 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4754 galaxy.util.task DEBUG 2024-04-18 04:40:45,813 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.979 ms)
4755
4756 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4757 [2024-04-18 04:45:23,257: DEBUG/MainProcess] beat: Synchronizing schedule...
4758 [2024-04-18 04:45:23,259: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4759 [2024-04-18 04:50:23,359: DEBUG/MainProcess] beat: Synchronizing schedule...
4760 [2024-04-18 04:50:23,361: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4761 [2024-04-18 04:55:23,453: DEBUG/MainProcess] beat: Synchronizing schedule...
4762 [2024-04-18 04:55:23,455: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4763 [2024-04-18 05:00:23,556: DEBUG/MainProcess] beat: Synchronizing schedule...
4764 [2024-04-18 05:00:23,557: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4765 [2024-04-18 05:05:23,658: DEBUG/MainProcess] beat: Synchronizing schedule...
4766 [2024-04-18 05:05:23,660: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4767 [2024-04-18 05:10:23,760: DEBUG/MainProcess] beat: Synchronizing schedule...
4768 [2024-04-18 05:10:23,762: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4769 [2024-04-18 05:15:23,863: DEBUG/MainProcess] beat: Synchronizing schedule...
4770 [2024-04-18 05:15:23,864: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4771 [2024-04-18 05:20:23,964: DEBUG/MainProcess] beat: Synchronizing schedule...
4772 [2024-04-18 05:20:23,966: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4773 [2024-04-18 05:25:24,067: DEBUG/MainProcess] beat: Synchronizing schedule...
4774 [2024-04-18 05:25:24,068: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4775 [2024-04-18 05:30:24,125: DEBUG/MainProcess] beat: Synchronizing schedule...
4776 [2024-04-18 05:30:24,127: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4777 [2024-04-18 05:35:24,228: DEBUG/MainProcess] beat: Synchronizing schedule...
4778 [2024-04-18 05:35:24,229: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4779 [2024-04-18 05:40:23,223: DEBUG/MainProcess] beat: Synchronizing schedule...
4780 [2024-04-18 05:40:23,225: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4781 [2024-04-18 05:40:23,241: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->dc7dc411-8b76-41b6-a62e-9aa68bbd7d98
4782 [2024-04-18 05:40:23,242: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4783 [2024-04-18 05:40:23,251: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->66986c3f-80e3-47ea-8c45-d279a175b01e
4784 [2024-04-18 05:40:23,251: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4785
4786 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4787 [2024-04-18 05:40:23,929: INFO/main] Task galaxy.prune_history_audit_table[dc7dc411-8b76-41b6-a62e-9aa68bbd7d98] received
4788 [2024-04-18 05:40:23,929: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3c1d95b2-3778-40e8-bf33-491d96f79a6d'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4789 [2024-04-18 05:40:23,958: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (27.948 ms)
4790 [2024-04-18 05:40:23,959: INFO/main] Task galaxy.prune_history_audit_table[dc7dc411-8b76-41b6-a62e-9aa68bbd7d98] succeeded in 0.028529241681098938s: None
4791 [2024-04-18 05:40:23,973: INFO/main] Task galaxy.cleanup_short_term_storage[66986c3f-80e3-47ea-8c45-d279a175b01e] received
4792 [2024-04-18 05:40:23,973: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '66986c3f-80e3-47ea-8c45-d279a175b01e', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'e4c4659d-87e7-4ff5-8b0c-8b1285d1eaa9'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4793 [2024-04-18 05:40:23,975: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.527 ms)
4794 [2024-04-18 05:40:23,975: INFO/main] Task galaxy.cleanup_short_term_storage[66986c3f-80e3-47ea-8c45-d279a175b01e] succeeded in 0.0009161904454231262s: None
4795
4796 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4797 galaxy.util.task DEBUG 2024-04-18 05:40:45,827 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.637 ms)
4798
4799 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4800 [2024-04-18 05:45:23,297: DEBUG/MainProcess] beat: Synchronizing schedule...
4801 [2024-04-18 05:45:23,299: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4802 [2024-04-18 05:50:23,399: DEBUG/MainProcess] beat: Synchronizing schedule...
4803 [2024-04-18 05:50:23,401: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4804 [2024-04-18 05:55:23,502: DEBUG/MainProcess] beat: Synchronizing schedule...
4805 [2024-04-18 05:55:23,504: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4806 [2024-04-18 06:00:23,604: DEBUG/MainProcess] beat: Synchronizing schedule...
4807 [2024-04-18 06:00:23,606: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4808 [2024-04-18 06:05:23,706: DEBUG/MainProcess] beat: Synchronizing schedule...
4809 [2024-04-18 06:05:23,708: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4810 [2024-04-18 06:10:23,809: DEBUG/MainProcess] beat: Synchronizing schedule...
4811 [2024-04-18 06:10:23,811: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4812 [2024-04-18 06:15:23,838: DEBUG/MainProcess] beat: Synchronizing schedule...
4813 [2024-04-18 06:15:23,840: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4814 [2024-04-18 06:20:23,933: DEBUG/MainProcess] beat: Synchronizing schedule...
4815 [2024-04-18 06:20:23,935: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4816 [2024-04-18 06:25:24,029: DEBUG/MainProcess] beat: Synchronizing schedule...
4817 [2024-04-18 06:25:24,031: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4818 [2024-04-18 06:30:24,045: DEBUG/MainProcess] beat: Synchronizing schedule...
4819 [2024-04-18 06:30:24,047: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4820 [2024-04-18 06:35:24,082: DEBUG/MainProcess] beat: Synchronizing schedule...
4821 [2024-04-18 06:35:24,084: DEBUG/MainProcess] beat: Waking up in 4.99 minutes.
4822 [2024-04-18 06:40:23,316: DEBUG/MainProcess] beat: Synchronizing schedule...
4823 [2024-04-18 06:40:23,318: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4824 [2024-04-18 06:40:23,343: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->cd57a169-f939-4c17-bb93-0896a65750d3
4825 [2024-04-18 06:40:23,343: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4826 [2024-04-18 06:40:23,356: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2
4827 [2024-04-18 06:40:23,357: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4828
4829 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4830 [2024-04-18 06:40:23,749: INFO/main] Task galaxy.prune_history_audit_table[cd57a169-f939-4c17-bb93-0896a65750d3] received
4831 [2024-04-18 06:40:23,750: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'cd57a169-f939-4c17-bb93-0896a65750d3', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'eb86918a-2429-4fca-8b3c-855b680002bc'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4832 [2024-04-18 06:40:23,776: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (24.995 ms)
4833 [2024-04-18 06:40:23,776: INFO/main] Task galaxy.prune_history_audit_table[cd57a169-f939-4c17-bb93-0896a65750d3] succeeded in 0.025545649230480194s: None
4834 [2024-04-18 06:40:23,790: INFO/main] Task galaxy.cleanup_short_term_storage[ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2] received
4835 [2024-04-18 06:40:23,790: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'bfc2612a-ad55-4c4a-b0d4-0ca9b0652362'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4836 [2024-04-18 06:40:23,792: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.546 ms)
4837 [2024-04-18 06:40:23,792: INFO/main] Task galaxy.cleanup_short_term_storage[ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2] succeeded in 0.0009263940155506134s: None
4838
4839 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4840 galaxy.util.task DEBUG 2024-04-18 06:40:45,841 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.355 ms)
4841
4842 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4843 [2024-04-18 06:45:23,457: DEBUG/MainProcess] beat: Synchronizing schedule...
4844 [2024-04-18 06:45:23,459: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4845 [2024-04-18 06:50:23,559: DEBUG/MainProcess] beat: Synchronizing schedule...
4846 [2024-04-18 06:50:23,561: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4847 [2024-04-18 06:55:23,662: DEBUG/MainProcess] beat: Synchronizing schedule...
4848 [2024-04-18 06:55:23,664: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4849 [2024-04-18 07:00:23,764: DEBUG/MainProcess] beat: Synchronizing schedule...
4850 [2024-04-18 07:00:23,766: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4851 [2024-04-18 07:05:23,866: DEBUG/MainProcess] beat: Synchronizing schedule...
4852 [2024-04-18 07:05:23,868: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4853 [2024-04-18 07:10:23,969: DEBUG/MainProcess] beat: Synchronizing schedule...
4854 [2024-04-18 07:10:23,971: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4855 [2024-04-18 07:15:24,071: DEBUG/MainProcess] beat: Synchronizing schedule...
4856 [2024-04-18 07:15:24,073: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4857 [2024-04-18 07:20:24,081: DEBUG/MainProcess] beat: Synchronizing schedule...
4858 [2024-04-18 07:20:24,083: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4859 [2024-04-18 07:25:24,097: DEBUG/MainProcess] beat: Synchronizing schedule...
4860 [2024-04-18 07:25:24,099: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4861 [2024-04-18 07:30:24,113: DEBUG/MainProcess] beat: Synchronizing schedule...
4862 [2024-04-18 07:30:24,115: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4863 [2024-04-18 07:35:24,129: DEBUG/MainProcess] beat: Synchronizing schedule...
4864 [2024-04-18 07:35:24,131: DEBUG/MainProcess] beat: Waking up in 4.99 minutes.
4865 [2024-04-18 07:40:23,408: DEBUG/MainProcess] beat: Synchronizing schedule...
4866 [2024-04-18 07:40:23,410: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4867 [2024-04-18 07:40:23,425: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->a33384ab-568b-4871-a018-0bb7251256f4
4868 [2024-04-18 07:40:23,426: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4869 [2024-04-18 07:40:23,434: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->3602327b-3bcb-459e-88db-431b691a4fb3
4870 [2024-04-18 07:40:23,434: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4871
4872 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4873 [2024-04-18 07:40:23,603: INFO/main] Task galaxy.prune_history_audit_table[a33384ab-568b-4871-a018-0bb7251256f4] received
4874 [2024-04-18 07:40:23,604: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'a33384ab-568b-4871-a018-0bb7251256f4', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '5f2ab7bb-638b-41fd-a64c-e5ece060823f'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4875 [2024-04-18 07:40:23,625: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (20.377 ms)
4876 [2024-04-18 07:40:23,625: INFO/main] Task galaxy.prune_history_audit_table[a33384ab-568b-4871-a018-0bb7251256f4] succeeded in 0.020866602659225464s: None
4877 [2024-04-18 07:40:23,638: INFO/main] Task galaxy.cleanup_short_term_storage[3602327b-3bcb-459e-88db-431b691a4fb3] received
4878 [2024-04-18 07:40:23,639: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '3602327b-3bcb-459e-88db-431b691a4fb3', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '7059a64c-c401-457e-a5c7-3435961f3748'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4879 [2024-04-18 07:40:23,640: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.518 ms)
4880 [2024-04-18 07:40:23,641: INFO/main] Task galaxy.cleanup_short_term_storage[3602327b-3bcb-459e-88db-431b691a4fb3] succeeded in 0.0009128199890255928s: None
4881
4882 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4883 galaxy.util.task DEBUG 2024-04-18 07:40:45,854 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.817 ms)
4884
4885 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4886 [2024-04-18 07:45:23,534: DEBUG/MainProcess] beat: Synchronizing schedule...
4887 [2024-04-18 07:45:23,536: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4888 [2024-04-18 07:50:23,637: DEBUG/MainProcess] beat: Synchronizing schedule...
4889 [2024-04-18 07:50:23,639: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4890 [2024-04-18 07:55:23,739: DEBUG/MainProcess] beat: Synchronizing schedule...
4891 [2024-04-18 07:55:23,741: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4892 [2024-04-18 08:00:23,841: DEBUG/MainProcess] beat: Synchronizing schedule...
4893 [2024-04-18 08:00:23,843: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4894 [2024-04-18 08:05:23,933: DEBUG/MainProcess] beat: Synchronizing schedule...
4895 [2024-04-18 08:05:23,935: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4896 [2024-04-18 08:10:24,036: DEBUG/MainProcess] beat: Synchronizing schedule...
4897 [2024-04-18 08:10:24,037: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4898 [2024-04-18 08:15:24,137: DEBUG/MainProcess] beat: Synchronizing schedule...
4899 [2024-04-18 08:15:24,138: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4900 [2024-04-18 08:20:24,145: DEBUG/MainProcess] beat: Synchronizing schedule...
4901 [2024-04-18 08:20:24,147: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4902 [2024-04-18 08:25:24,161: DEBUG/MainProcess] beat: Synchronizing schedule...
4903 [2024-04-18 08:25:24,163: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4904 [2024-04-18 08:30:24,209: DEBUG/MainProcess] beat: Synchronizing schedule...
4905 [2024-04-18 08:30:24,211: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4906 [2024-04-18 08:35:24,311: DEBUG/MainProcess] beat: Synchronizing schedule...
4907 [2024-04-18 08:35:24,313: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4908 [2024-04-18 08:40:23,460: DEBUG/MainProcess] beat: Synchronizing schedule...
4909 [2024-04-18 08:40:23,462: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4910 [2024-04-18 08:40:23,477: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->80cd14d1-eb6d-4a69-992e-315f7baee5d0
4911 [2024-04-18 08:40:23,477: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4912 [2024-04-18 08:40:23,485: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->e9156deb-0278-497b-9183-015cd83d485e
4913 [2024-04-18 08:40:23,485: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4914
4915 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4916 [2024-04-18 08:40:24,134: INFO/main] Task galaxy.prune_history_audit_table[80cd14d1-eb6d-4a69-992e-315f7baee5d0] received
4917 [2024-04-18 08:40:24,135: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '80cd14d1-eb6d-4a69-992e-315f7baee5d0', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '98d69f20-b41e-4431-9464-9e3b01be2268'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4918 [2024-04-18 08:40:24,153: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (16.910 ms)
4919 [2024-04-18 08:40:24,153: INFO/main] Task galaxy.prune_history_audit_table[80cd14d1-eb6d-4a69-992e-315f7baee5d0] succeeded in 0.01733121182769537s: None
4920 [2024-04-18 08:40:24,169: INFO/main] Task galaxy.cleanup_short_term_storage[e9156deb-0278-497b-9183-015cd83d485e] received
4921 [2024-04-18 08:40:24,170: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'e9156deb-0278-497b-9183-015cd83d485e', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'e9156deb-0278-497b-9183-015cd83d485e', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'e9156deb-0278-497b-9183-015cd83d485e', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'e9156deb-0278-497b-9183-015cd83d485e', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '4e80480e-b52f-4cab-9293-c5eeaf25aa4d'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'e9156deb-0278-497b-9183-015cd83d485e', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4922 [2024-04-18 08:40:24,171: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.468 ms)
4923 [2024-04-18 08:40:24,171: INFO/main] Task galaxy.cleanup_short_term_storage[e9156deb-0278-497b-9183-015cd83d485e] succeeded in 0.0008165780454874039s: None
4924
4925 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4926 galaxy.util.task DEBUG 2024-04-18 08:40:45,867 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (11.811 ms)
4927
4928 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4929 [2024-04-18 08:45:23,585: DEBUG/MainProcess] beat: Synchronizing schedule...
4930 [2024-04-18 08:45:23,587: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4931 [2024-04-18 08:50:23,687: DEBUG/MainProcess] beat: Synchronizing schedule...
4932 [2024-04-18 08:50:23,689: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4933 [2024-04-18 08:55:23,741: DEBUG/MainProcess] beat: Synchronizing schedule...
4934 [2024-04-18 08:55:23,743: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4935 [2024-04-18 09:00:23,843: DEBUG/MainProcess] beat: Synchronizing schedule...
4936 [2024-04-18 09:00:23,845: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4937 [2024-04-18 09:05:23,941: DEBUG/MainProcess] beat: Synchronizing schedule...
4938 [2024-04-18 09:05:23,942: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4939 [2024-04-18 09:10:23,990: DEBUG/MainProcess] beat: Synchronizing schedule...
4940 [2024-04-18 09:10:23,992: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4941 [2024-04-18 09:15:24,092: DEBUG/MainProcess] beat: Synchronizing schedule...
4942 [2024-04-18 09:15:24,094: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4943 [2024-04-18 09:20:24,194: DEBUG/MainProcess] beat: Synchronizing schedule...
4944 [2024-04-18 09:20:24,196: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4945 [2024-04-18 09:25:24,257: DEBUG/MainProcess] beat: Synchronizing schedule...
4946 [2024-04-18 09:25:24,259: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4947 [2024-04-18 09:30:24,273: DEBUG/MainProcess] beat: Synchronizing schedule...
4948 [2024-04-18 09:30:24,275: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4949 [2024-04-18 09:35:24,375: DEBUG/MainProcess] beat: Synchronizing schedule...
4950 [2024-04-18 09:35:24,377: DEBUG/MainProcess] beat: Waking up in 4.98 minutes.
4951 [2024-04-18 09:40:23,552: DEBUG/MainProcess] beat: Synchronizing schedule...
4952 [2024-04-18 09:40:23,554: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4953 [2024-04-18 09:40:23,569: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->0222ba67-932b-4b98-b938-57e4b5f2cd0c
4954 [2024-04-18 09:40:23,569: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4955 [2024-04-18 09:40:23,577: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->07acb7cc-dca7-48ff-800f-c387d6511954
4956 [2024-04-18 09:40:23,577: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4957
4958 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
4959 [2024-04-18 09:40:24,094: INFO/main] Task galaxy.prune_history_audit_table[0222ba67-932b-4b98-b938-57e4b5f2cd0c] received
4960 [2024-04-18 09:40:24,095: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '0222ba67-932b-4b98-b938-57e4b5f2cd0c', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'da724dd0-d809-4e19-ac62-0f38ae074a0e'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4961 [2024-04-18 09:40:24,121: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (24.527 ms)
4962 [2024-04-18 09:40:24,121: INFO/main] Task galaxy.prune_history_audit_table[0222ba67-932b-4b98-b938-57e4b5f2cd0c] succeeded in 0.02495371177792549s: None
4963 [2024-04-18 09:40:24,137: INFO/main] Task galaxy.cleanup_short_term_storage[07acb7cc-dca7-48ff-800f-c387d6511954] received
4964 [2024-04-18 09:40:24,137: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '07acb7cc-dca7-48ff-800f-c387d6511954', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '54e0e291-0917-4d4e-b62a-ab7aabf0f506'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
4965 [2024-04-18 09:40:24,139: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.468 ms)
4966 [2024-04-18 09:40:24,140: INFO/main] Task galaxy.cleanup_short_term_storage[07acb7cc-dca7-48ff-800f-c387d6511954] succeeded in 0.0008255336433649063s: None
4967
4968 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
4969 galaxy.util.task DEBUG 2024-04-18 09:40:45,881 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.601 ms)
4970
4971 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
4972 [2024-04-18 09:45:23,659: DEBUG/MainProcess] beat: Synchronizing schedule...
4973 [2024-04-18 09:45:23,661: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4974 [2024-04-18 09:50:23,665: DEBUG/MainProcess] beat: Synchronizing schedule...
4975 [2024-04-18 09:50:23,666: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4976 [2024-04-18 09:55:23,767: DEBUG/MainProcess] beat: Synchronizing schedule...
4977 [2024-04-18 09:55:23,768: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4978 [2024-04-18 10:00:23,801: DEBUG/MainProcess] beat: Synchronizing schedule...
4979 [2024-04-18 10:00:23,803: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4980 [2024-04-18 10:05:23,903: DEBUG/MainProcess] beat: Synchronizing schedule...
4981 [2024-04-18 10:05:23,904: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4982 [2024-04-18 10:10:24,005: DEBUG/MainProcess] beat: Synchronizing schedule...
4983 [2024-04-18 10:10:24,006: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4984 [2024-04-18 10:15:24,107: DEBUG/MainProcess] beat: Synchronizing schedule...
4985 [2024-04-18 10:15:24,108: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4986 [2024-04-18 10:20:24,208: DEBUG/MainProcess] beat: Synchronizing schedule...
4987 [2024-04-18 10:20:24,210: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4988 [2024-04-18 10:25:24,310: DEBUG/MainProcess] beat: Synchronizing schedule...
4989 [2024-04-18 10:25:24,312: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4990 [2024-04-18 10:30:24,367: DEBUG/MainProcess] beat: Synchronizing schedule...
4991 [2024-04-18 10:30:24,368: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
4992 [2024-04-18 10:35:24,378: DEBUG/MainProcess] beat: Synchronizing schedule...
4993 [2024-04-18 10:35:24,379: DEBUG/MainProcess] beat: Waking up in 4.99 minutes.
4994 [2024-04-18 10:40:23,641: DEBUG/MainProcess] beat: Synchronizing schedule...
4995 [2024-04-18 10:40:23,643: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
4996 [2024-04-18 10:40:23,657: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->1cab00c7-ce29-45cc-8f15-06347cd63ec8
4997 [2024-04-18 10:40:23,658: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
4998 [2024-04-18 10:40:23,663: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->44be2fd4-fea4-4951-957f-fac0cf335b66
4999 [2024-04-18 10:40:23,663: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
5000
5001 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <==
5002 [2024-04-18 10:40:23,980: INFO/main] Task galaxy.prune_history_audit_table[1cab00c7-ce29-45cc-8f15-06347cd63ec8] received
5003 [2024-04-18 10:40:23,980: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '1cab00c7-ce29-45cc-8f15-06347cd63ec8', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '4aa0edcd-532b-41b9-adf9-c21ec139f487'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
5004 [2024-04-18 10:40:24,006: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (24.358 ms)
5005 [2024-04-18 10:40:24,006: INFO/main] Task galaxy.prune_history_audit_table[1cab00c7-ce29-45cc-8f15-06347cd63ec8] succeeded in 0.02476848941296339s: None
5006 [2024-04-18 10:40:24,029: INFO/main] Task galaxy.cleanup_short_term_storage[44be2fd4-fea4-4951-957f-fac0cf335b66] received
5007 [2024-04-18 10:40:24,030: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '44be2fd4-fea4-4951-957f-fac0cf335b66', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3f24560d-9fc4-49e5-b0db-ad132e682c2f'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{})
5008 [2024-04-18 10:40:24,031: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.456 ms)
5009 [2024-04-18 10:40:24,031: INFO/main] Task galaxy.cleanup_short_term_storage[44be2fd4-fea4-4951-957f-fac0cf335b66] succeeded in 0.000800449401140213s: None
5010
5011 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
5012 galaxy.util.task DEBUG 2024-04-18 10:40:45,895 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.565 ms)
5013
5014 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <==
5015 [2024-04-18 10:45:23,761: DEBUG/MainProcess] beat: Synchronizing schedule...
5016 [2024-04-18 10:45:23,763: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
5017 [2024-04-18 10:50:23,863: DEBUG/MainProcess] beat: Synchronizing schedule...
5018 [2024-04-18 10:50:23,865: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
5019
5020 ==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <==
5021 uvicorn.access INFO 2024-04-18 10:50:58,143 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET / HTTP/1.1" 200
5022 uvicorn.access INFO 2024-04-18 10:50:58,166 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/base.css?v=1713286767000 HTTP/1.1" 304
5023 uvicorn.access INFO 2024-04-18 10:50:58,184 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/analysis.bundled.js?v=1713286767000 HTTP/1.1" 304
5024 uvicorn.access INFO 2024-04-18 10:50:58,184 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /static/style/bootstrap-tour.css?v=1713286767000 HTTP/1.1" 304
5025 uvicorn.access INFO 2024-04-18 10:50:58,184 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /static/dist/libs.bundled.js?v=1713286767000 HTTP/1.1" 304
5026 uvicorn.access INFO 2024-04-18 10:50:58,185 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53968 - "GET /static/style/jquery-ui/smoothness/jquery-ui.css?v=1713286767000 HTTP/1.1" 304
5027 uvicorn.access INFO 2024-04-18 10:50:58,500 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /favicon.ico HTTP/1.1" 404
5028 uvicorn.access INFO 2024-04-18 10:50:58,633 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /api/webhooks HTTP/1.1" 200
5029 uvicorn.access INFO 2024-04-18 10:50:58,655 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/f49a6a2402ca42baecbb.png HTTP/1.1" 304
5030 uvicorn.access INFO 2024-04-18 10:50:58,712 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /welcome HTTP/1.1" 302
5031 uvicorn.access INFO 2024-04-18 10:50:58,723 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/7c05f33b4fe5f8132439.woff2 HTTP/1.1" 304
5032 uvicorn.access INFO 2024-04-18 10:50:58,724 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /api/entry_points?running=true HTTP/1.1" 200
5033 uvicorn.access INFO 2024-04-18 10:50:58,734 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /api/webhooks HTTP/1.1" 200
5034 uvicorn.access INFO 2024-04-18 10:50:58,742 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /api/users/current HTTP/1.1" 200
5035 uvicorn.access INFO 2024-04-18 10:50:58,747 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/1551f4f60c37af51121f.woff2 HTTP/1.1" 304
5036 uvicorn.access INFO 2024-04-18 10:50:58,748 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /static/welcome.html HTTP/1.1" 304
5037 uvicorn.access INFO 2024-04-18 10:50:58,765 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/favicon.svg HTTP/1.1" 304
5038 uvicorn.access INFO 2024-04-18 10:50:58,777 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /static/dist/base.css HTTP/1.1" 304
5039 uvicorn.access INFO 2024-04-18 10:50:58,789 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /api/tools?in_panel=true&view=default HTTP/1.1" 200
5040 uvicorn.access INFO 2024-04-18 10:50:58,804 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53968 - "GET /api/configuration HTTP/1.1" 200
5041 uvicorn.access INFO 2024-04-18 10:50:58,823 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /history/current_history_json HTTP/1.1" 200
5042 uvicorn.access INFO 2024-04-18 10:50:58,852 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /api/histories?view=summary HTTP/1.1" 200
5043 uvicorn.access INFO 2024-04-18 10:50:58,960 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /api/datatypes?extension_only=False HTTP/1.1" 200
5044 uvicorn.access INFO 2024-04-18 10:50:58,961 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53968 - "GET /history/current_history_json HTTP/1.1" 200
5045 uvicorn.access INFO 2024-04-18 10:50:59,075 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-18T14:50:58.377Z HTTP/1.1" 200
5046 uvicorn.access INFO 2024-04-18 10:50:59,134 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /api/genomes HTTP/1.1" 200
5047 uvicorn.access INFO 2024-04-18 10:50:59,139 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /api/histories/d23b2492b9db9f5f?view=summary&keys=size,contents_active,user_id HTTP/1.1" 200
5048 uvicorn.access INFO 2024-04-18 10:50:59,174 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200
5049 uvicorn.access INFO 2024-04-18 10:50:59,177 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200
5050 uvicorn.access INFO 2024-04-18 10:51:00,347 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /static/dist/7a3337626410ca2f4071.woff2 HTTP/1.1" 304
5051 uvicorn.access INFO 2024-04-18 10:51:00,423 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200
5052 uvicorn.access INFO 2024-04-18 10:51:02,135 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53990 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5053 uvicorn.access INFO 2024-04-18 10:51:05,174 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:54002 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5054 uvicorn.access INFO 2024-04-18 10:51:08,211 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53098 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5055 uvicorn.access INFO 2024-04-18 10:51:08,694 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53098 - "GET /api/entry_points?running=true HTTP/1.1" 200
5056 uvicorn.access INFO 2024-04-18 10:51:09,332 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53098 - "GET /api/datasets/b29f83d2817c3b8c/display?to_ext=tgz HTTP/1.1" 200
5057 uvicorn.access INFO 2024-04-18 10:51:11,243 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53114 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5058 uvicorn.access INFO 2024-04-18 10:51:14,310 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53130 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5059 uvicorn.access INFO 2024-04-18 10:51:17,373 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40312 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5060 uvicorn.access INFO 2024-04-18 10:51:18,711 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40312 - "GET /api/entry_points?running=true HTTP/1.1" 200
5061 uvicorn.access INFO 2024-04-18 10:51:20,419 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40312 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5062 uvicorn.access INFO 2024-04-18 10:51:23,485 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40328 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5063 uvicorn.access INFO 2024-04-18 10:51:26,535 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51608 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5064 uvicorn.access INFO 2024-04-18 10:51:28,699 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51614 - "GET /api/entry_points?running=true HTTP/1.1" 200
5065 uvicorn.access INFO 2024-04-18 10:51:29,570 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51614 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5066 uvicorn.access INFO 2024-04-18 10:51:32,609 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51628 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5067 uvicorn.access INFO 2024-04-18 10:51:35,647 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51630 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5068 uvicorn.access INFO 2024-04-18 10:51:38,695 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38146 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5069 uvicorn.access INFO 2024-04-18 10:51:38,707 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38150 - "GET /api/entry_points?running=true HTTP/1.1" 200
5070 uvicorn.access INFO 2024-04-18 10:51:41,730 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38156 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5071 uvicorn.access INFO 2024-04-18 10:51:44,765 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38172 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5072 uvicorn.access INFO 2024-04-18 10:51:47,810 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38190 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5073 uvicorn.access INFO 2024-04-18 10:51:48,711 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38190 - "GET /api/entry_points?running=true HTTP/1.1" 200
5074 uvicorn.access INFO 2024-04-18 10:51:50,843 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38206 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5075 uvicorn.access INFO 2024-04-18 10:51:53,887 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38208 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5076 uvicorn.access INFO 2024-04-18 10:51:56,922 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40780 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5077 uvicorn.access INFO 2024-04-18 10:51:58,706 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40780 - "GET /api/entry_points?running=true HTTP/1.1" 200
5078 uvicorn.access INFO 2024-04-18 10:51:59,955 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40780 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5079 uvicorn.access INFO 2024-04-18 10:52:03,215 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40790 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5080 uvicorn.access INFO 2024-04-18 10:52:06,248 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33554 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5081 uvicorn.access INFO 2024-04-18 10:52:08,707 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33564 - "GET /api/entry_points?running=true HTTP/1.1" 200
5082 uvicorn.access INFO 2024-04-18 10:52:09,282 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33564 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5083 uvicorn.access INFO 2024-04-18 10:52:12,317 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33568 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5084 uvicorn.access INFO 2024-04-18 10:52:15,356 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33572 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5085 uvicorn.access INFO 2024-04-18 10:52:18,392 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:46676 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5086 uvicorn.access INFO 2024-04-18 10:52:18,705 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:46676 - "GET /api/entry_points?running=true HTTP/1.1" 200
5087 uvicorn.access INFO 2024-04-18 10:52:21,426 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:46688 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5088 uvicorn.access INFO 2024-04-18 10:52:24,459 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:46702 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5089 uvicorn.access INFO 2024-04-18 10:52:27,490 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45368 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5090 uvicorn.access INFO 2024-04-18 10:52:28,708 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45368 - "GET /api/entry_points?running=true HTTP/1.1" 200
5091 uvicorn.access INFO 2024-04-18 10:52:30,535 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45368 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5092 uvicorn.access INFO 2024-04-18 10:52:33,568 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45378 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5093 uvicorn.access INFO 2024-04-18 10:52:36,599 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37798 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5094 uvicorn.access INFO 2024-04-18 10:52:38,718 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37810 - "GET /api/entry_points?running=true HTTP/1.1" 200
5095 uvicorn.access INFO 2024-04-18 10:52:39,631 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37810 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5096 uvicorn.access INFO 2024-04-18 10:52:42,676 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5097 uvicorn.access INFO 2024-04-18 10:52:43,999 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/configuration HTTP/1.1" 200
5098 uvicorn.access INFO 2024-04-18 10:52:44,056 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200
5099 uvicorn.access INFO 2024-04-18 10:52:44,106 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/users/current HTTP/1.1" 200
5100 uvicorn.access INFO 2024-04-18 10:52:44,203 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /api/histories?view=summary HTTP/1.1" 200
5101 uvicorn.access INFO 2024-04-18 10:52:44,206 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /history/current_history_json HTTP/1.1" 200
5102 /scratch/rico/galaxy/lib/galaxy/model/__init__.py:467: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
5103 return self.text_metrics + self.numeric_metrics
5104 uvicorn.access INFO 2024-04-18 10:52:44,229 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/jobs/8d6bba82c3443fc0?full=True HTTP/1.1" 200
5105 uvicorn.access INFO 2024-04-18 10:52:44,380 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37852 - "GET /api/users/current HTTP/1.1" 200
5106 uvicorn.access INFO 2024-04-18 10:52:44,381 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37846 - "GET /api/jobs/8d6bba82c3443fc0/destination_params HTTP/1.1" 200
5107 uvicorn.access INFO 2024-04-18 10:52:44,415 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /api/datasets/b29f83d2817c3b8c/inheritance_chain HTTP/1.1" 200
5108 uvicorn.access INFO 2024-04-18 10:52:44,584 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/datasets/b29f83d2817c3b8c/storage HTTP/1.1" 200
5109 uvicorn.access INFO 2024-04-18 10:52:44,604 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37834 - "GET /api/datasets/b29f83d2817c3b8c/metrics?hda_ldda=hda HTTP/1.1" 200
5110 uvicorn.access INFO 2024-04-18 10:52:44,639 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /history/current_history_json HTTP/1.1" 200
5111 uvicorn.access INFO 2024-04-18 10:52:44,681 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/datasets/b29f83d2817c3b8c/parameters_display?hda_ldda=hda HTTP/1.1" 200
5112 uvicorn.access INFO 2024-04-18 10:52:44,782 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/histories?view=summary HTTP/1.1" 200
5113 uvicorn.access INFO 2024-04-18 10:52:44,852 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37846 - "GET /api/jobs/8d6bba82c3443fc0?full=True HTTP/1.1" 200
5114 uvicorn.access INFO 2024-04-18 10:52:44,914 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37852 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200
5115 uvicorn.access INFO 2024-04-18 10:52:44,948 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37846 - "GET /api/configuration/decode/8d6bba82c3443fc0 HTTP/1.1" 200
5116 uvicorn.access INFO 2024-04-18 10:52:45,073 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37852 - "GET /api/configuration/decode/b29f83d2817c3b8c HTTP/1.1" 200
5117 uvicorn.access INFO 2024-04-18 10:52:45,080 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37834 - "GET /api/configuration/decode/d23b2492b9db9f5f HTTP/1.1" 200
5118 uvicorn.access INFO 2024-04-18 10:52:45,123 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /api/datasets/8d6bba82c3443fc0 HTTP/1.1" 200
5119 uvicorn.access INFO 2024-04-18 10:52:45,171 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/datasets/9eb32cf8214ea72d HTTP/1.1" 200
5120 uvicorn.access INFO 2024-04-18 10:52:45,204 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200
5121 uvicorn.access INFO 2024-04-18 10:52:45,710 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5122 uvicorn.access INFO 2024-04-18 10:52:48,712 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59030 - "GET /api/entry_points?running=true HTTP/1.1" 200
5123 uvicorn.access INFO 2024-04-18 10:52:48,746 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59030 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5124 uvicorn.access INFO 2024-04-18 10:52:51,779 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59036 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5125 uvicorn.access INFO 2024-04-18 10:52:54,811 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59042 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5126 uvicorn.access INFO 2024-04-18 10:52:57,846 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34806 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5127 uvicorn.access INFO 2024-04-18 10:52:58,714 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34806 - "GET /api/entry_points?running=true HTTP/1.1" 200
5128 uvicorn.access INFO 2024-04-18 10:53:00,879 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34814 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5129 uvicorn.access INFO 2024-04-18 10:53:03,914 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34830 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5130 uvicorn.access INFO 2024-04-18 10:53:06,947 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53966 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5131 uvicorn.access INFO 2024-04-18 10:53:08,718 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53966 - "GET /api/entry_points?running=true HTTP/1.1" 200
5132 uvicorn.access INFO 2024-04-18 10:53:09,979 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53966 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5133 uvicorn.access INFO 2024-04-18 10:53:13,011 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5134 uvicorn.access INFO 2024-04-18 10:53:16,046 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38992 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5135 uvicorn.access INFO 2024-04-18 10:53:18,716 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39008 - "GET /api/entry_points?running=true HTTP/1.1" 200
5136 uvicorn.access INFO 2024-04-18 10:53:19,078 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39008 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5137 uvicorn.access INFO 2024-04-18 10:53:22,110 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39020 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5138 uvicorn.access INFO 2024-04-18 10:53:25,142 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39028 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5139 uvicorn.access INFO 2024-04-18 10:53:28,175 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43214 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5140 uvicorn.access INFO 2024-04-18 10:53:28,727 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43214 - "GET /api/entry_points?running=true HTTP/1.1" 200
5141 uvicorn.access INFO 2024-04-18 10:53:31,210 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43224 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5142 uvicorn.access INFO 2024-04-18 10:53:34,242 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43230 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5143 uvicorn.access INFO 2024-04-18 10:53:37,274 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59340 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5144 uvicorn.access INFO 2024-04-18 10:53:38,716 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59340 - "GET /api/entry_points?running=true HTTP/1.1" 200
5145 uvicorn.access INFO 2024-04-18 10:53:40,306 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59340 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5146 uvicorn.access INFO 2024-04-18 10:53:43,347 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59348 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200
5147 uvicorn.access INFO 2024-04-18 10:53:46,385 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44880 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200