Mercurial > repos > richard-burhans > segalign

diff run_segalign_diagonal_partition @ 4:36cafb694dd2 draft

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit b8aa943b38b865defab8a27e4404bb8a2131f919
author richard-burhans
date Tue, 23 Apr 2024 22:39:23 +0000
parents 9e34b25a8670
children 39c21be8f8b9
line wrap: on
line diff
--- a/run_segalign_diagonal_partition	Thu Apr 18 17:22:46 2024 +0000
+++ b/run_segalign_diagonal_partition	Tue Apr 23 22:39:23 2024 +0000
@@ -93,7 +93,7 @@
 
 time {
     while IFS= read -r line; do
-        "$TOOL_DIRECTORY/diagonal_partition.py" $MAX_SEGMENT_SIZE $line >> $LASTZ_COMMAND_FILE
+        python "$TOOL_DIRECTORY/diagonal_partition.py" $MAX_SEGMENT_SIZE $line >> $LASTZ_COMMAND_FILE
         # segalign sort writes out the partitioned segment files to the working
         # directory and prints the modified lastz commands.
     done < <(stdbuf -oL segalign $ref_path $query_path "${DATA_FOLDER}/" "$@" ) # segalign begins running in this line,