diff gapped_extension_options.xml @ 0:5c72425b7f1b draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gapped_extension_options.xml	Wed Apr 17 18:06:54 2024 +0000
@@ -0,0 +1,10 @@
+<macros>
+    <xml name="gapped_extension_options">
+        <section name="gapped_extension_options" expanded="false" title="Gapped Extension Options">
+            <param argument="--nogapped" type="boolean" checked="false" label="Don't perform gapped extension stage"/>
+            <param argument="--ydrop" type="integer" value="9430" label="Y-drop value for gapped extension"/>
+            <param argument="--gappedthresh" type="integer" value="" optional="true" label="Score threshold for gapped alignments"/>
+            <param argument="--notrivial" type="boolean" checked="false" label="Don't output a trivial self-alignment block if the target and query sequences are identical"/>
+        </section>
+    </xml>
+</macros>