diff scoring_options.xml @ 0:5c72425b7f1b draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/scoring_options.xml	Wed Apr 17 18:06:54 2024 +0000
@@ -0,0 +1,25 @@
+<macros>
+    <xml name="scoring_options">
+        <section name="scoring_options" expanded="false" title="Scoring Options">
+            <param argument="--scoring" type="data" value="false" optional="true" format="txt" label="Scoring file in LASTZ format"/>
+            <param name="ambiguous_selector" type="select" label="Ambiguous Nucleotides">
+                <option value="x" selected="true">None</option>
+                <option value="n">N</option>
+                <option value="iupac">IUPAC</option>
+            </param>
+            <conditional name="ambiguous_params">
+                <param name="set_ambiguous_params_selector" type="select" label="Set Ambiguous Nucleotide Scoring Parameters">
+                    <option value="false" selected="true">No</option>
+                    <option value="true">Yes</option>
+                </param>
+                <when value="false">
+                    <!-- Do nothing -->
+                </when>
+                <when value="true">
+                    <param name="ambiguous_reward" type="integer" value="0" label="Ambiguous Nucleotide Reward"/>
+                    <param name="ambiguous_penalty" type="integer" value="0" label="Ambiguous Nucleotide Penalty"/>
+                </when>
+            </conditional>
+        </section>
+    </xml>
+</macros>