Mercurial > repos > richard-burhans > segalign
diff serve.log @ 1:d3f11ae6790c draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
| author | richard-burhans |
|---|---|
| date | Thu, 18 Apr 2024 16:51:46 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/serve.log Thu Apr 18 16:51:46 2024 +0000 @@ -0,0 +1,5147 @@ +Created directory for Galaxy configuration [/scratch/rico/tmp/tmp12w4107b] +Writing dependency_resolvers_config_file to path /scratch/rico/tmp/tmp12w4107b/resolvers_conf.xml with contents [<dependency_resolvers> + <tool_shed_packages /> + <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/afs/bx.psu.edu/home/rico/.planemo/condarc" /> + <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/afs/bx.psu.edu/home/rico/.planemo/condarc" /> +</dependency_resolvers> +] +Writing tool_conf to path /scratch/rico/tmp/tmp12w4107b/tool_conf.xml with contents [<toolbox> + <tool file="data_source/upload.xml" /> + <tool file="/scratch/rico/galaxytools/tools/segalign/segalign.xml" /> +</toolbox> +] +Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/afs/bx.psu.edu/home/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --server-name main] +With environment variables: +============================ +GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key" +GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu" +GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True" +GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory" +GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True" +GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False" +GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True" +GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo" +GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True" +GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never" +GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org" +GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/segalign/test-data" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data" +GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False" +GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/scratch/rico/tmp/tmp12w4107b/deps" +GALAXY_CONFIG_OVERRIDE_FILE_PATH="/scratch/rico/tmp/tmp12w4107b/files" +GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/scratch/rico/tmp/tmp12w4107b/tmp" +GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/tool_conf.xml,/scratch/rico/tmp/tmp12w4107b/shed_tools_conf.xml" +GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml" +GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False" +GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/scratch/rico/tmp/tmp12w4107b/job_working_directory" +GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/scratch/rico/tmp/tmp12w4107b/compiled_templates" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/scratch/rico/tmp/tmp12w4107b/citations/data" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/scratch/rico/tmp/tmp12w4107b/citations/lock" +GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True" +GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True" +GALAXY_CONFIG_OVERRIDE_ID_SECRET="6bf329f92f26d5526e6bcd233e8760d0" +GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG" +GALAXY_CONFIG_OVERRIDE_DEBUG="true" +GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto" +GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash" +GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/scratch/rico/tmp/tmp12w4107b/integrated_tool_panel_conf.xml" +GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/scratch/rico/tmp/tmp12w4107b/empty_tool_conf.xml" +GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/segalign/test-data" +GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/shed_data_manager_conf.xml" +GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True" +GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid" +GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite?isolation_level=IMMEDIATE" +GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/job_conf.xml" +GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/job_metrics_conf.xml" +GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/resolvers_conf.xml" +GALAXY_SKIP_CLIENT_BUILD="1" +GALAXY_DEVELOPMENT_ENVIRONMENT="1" +GALAXY_LOG="main.log" +GALAXY_PID="main.pid" +GALAXY_CONFIG_FILE="/scratch/rico/tmp/tmp12w4107b/galaxy.yml" +GRAVITY_STATE_DIR="/scratch/rico/tmp/tmp12w4107b/gravity" +SUPERVISORD_SOCKET="/scratch/rico/tmp/tmpz69kch1_.sock" +============================ +galaxy.util.commands WARNING 2024-04-17 16:39:24,421: Passing program arguments as a string may be a security hazard if combined with untrusted input +Set $GALAXY_VIRTUAL_ENV to /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3 +Virtual environment directory exists. +Set $GALAXY_VIRTUAL_ENV to /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3 +Virtual environment directory exists. +Activated a virtualenv for Galaxy +/afs/bx.psu.edu/home/rico/.planemo/gx_venv_3 +/scratch/rico/galaxy +/afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin/python +/afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin/pip +/afs/bx.psu.edu/home/rico/.planemo/gx_venv_3 +/afs/bx.psu.edu/home/rico/.planemo/gx_venv_3 +. +.. +check_model.sh +.ci +.circleci +CITATION +client +CODE_OF_CONDUCT.md +config +contrib +CONTRIBUTING.md +CONTRIBUTORS.md +.coveragerc +create_toolshed_db.sh +cron +database +doc +.dockerignore +extract_dataset_parts.sh +.flake8 +.git +.gitattributes +.git-blame-ignore-revs +.github +.gitignore +.gitpod.yml +hooks +.isort.cfg +.k8s_ci.Dockerfile +lib +LICENSE.txt +main.log +Makefile +manage_db.sh +manage_toolshed_db.sh +mypy.ini +package.json +packages +.pre-commit-config.yaml.sample +pyproject.toml +pytest.ini +README.rst +.redocly.lint-ignore.yaml +.redocly.yaml +requirements.txt +rolling_restart.sh +run_reports.sh +run.sh +run_tests.sh +run_tool_shed.sh +scripts +SECURITY.md +static +templates +test +test-data +tool-data +tools +tox.ini +tsconfig.json +.vscode +Activating virtualenv at /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3 +Requirement already satisfied: pip>=20.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (24.0) +Requirement already satisfied: wheel in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (0.43.0) +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple, https://wheels.galaxyproject.org/simple +Ignoring asynctest: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment +Ignoring cached-property: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment +Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment +Ignoring numpy: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment +Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment +Requirement already satisfied: a2wsgi==1.6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.6.0) +Requirement already satisfied: adal==1.2.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (1.2.7) +Requirement already satisfied: aiofiles==22.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 5)) (22.1.0) +Requirement already satisfied: aiohttp==3.8.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 6)) (3.8.3) +Requirement already satisfied: aiosignal==1.3.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 7)) (1.3.1) +Requirement already satisfied: alembic-utils==0.7.8 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 8)) (0.7.8) +Requirement already satisfied: alembic==1.9.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 9)) (1.9.2) +Requirement already satisfied: amqp==5.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 10)) (5.1.1) +Requirement already satisfied: anyio==3.6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 11)) (3.6.2) +Requirement already satisfied: apispec==6.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 12)) (6.0.2) +Requirement already satisfied: appdirs==1.4.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 13)) (1.4.4) +Requirement already satisfied: arcp==0.2.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 14)) (0.2.1) +Requirement already satisfied: argcomplete==2.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 15)) (2.0.0) +Requirement already satisfied: async-timeout==4.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 16)) (4.0.2) +Requirement already satisfied: attmap==0.13.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 18)) (0.13.2) +Requirement already satisfied: attrs==22.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 19)) (22.2.0) +Requirement already satisfied: babel==2.11.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 20)) (2.11.0) +Requirement already satisfied: bagit-profile==1.3.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 21)) (1.3.1) +Requirement already satisfied: bagit==1.8.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 22)) (1.8.1) +Requirement already satisfied: bcrypt==4.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 23)) (4.0.1) +Requirement already satisfied: bdbag==1.6.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 24)) (1.6.3) +Requirement already satisfied: beaker==1.11.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 25)) (1.11.0) +Requirement already satisfied: billiard==3.6.4.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 26)) (3.6.4.0) +Requirement already satisfied: bioblend==1.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 27)) (1.0.0) +Requirement already satisfied: bleach==5.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 28)) (5.0.1) +Requirement already satisfied: boltons==21.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 29)) (21.0.0) +Requirement already satisfied: boto==2.49.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 30)) (2.49.0) +Requirement already satisfied: bx-python==0.9.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 31)) (0.9.0) +Requirement already satisfied: cachecontrol==0.12.11 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 32)) (0.12.11) +Requirement already satisfied: celery==5.2.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 35)) (5.2.7) +Requirement already satisfied: certifi==2022.12.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 36)) (2022.12.7) +Requirement already satisfied: cffi==1.15.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 37)) (1.15.1) +Requirement already satisfied: charset-normalizer==2.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 38)) (2.1.1) +Requirement already satisfied: cheetah3==3.2.6.post1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 39)) (3.2.6.post1) +Requirement already satisfied: circus==0.18.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 40)) (0.18.0) +Requirement already satisfied: click-didyoumean==0.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 41)) (0.3.0) +Requirement already satisfied: click-plugins==1.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 42)) (1.1.1) +Requirement already satisfied: click-repl==0.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 43)) (0.2.0) +Requirement already satisfied: click==8.1.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 44)) (8.1.3) +Requirement already satisfied: cloudauthz==0.6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 45)) (0.6.0) +Requirement already satisfied: cloudbridge==3.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 46)) (3.1.0) +Requirement already satisfied: coloredlogs==15.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 48)) (15.0.1) +Requirement already satisfied: conda-package-streaming==0.7.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 49)) (0.7.0) +Requirement already satisfied: cryptography==39.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 50)) (39.0.0) +Requirement already satisfied: cwl-upgrader==1.2.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 51)) (1.2.4) +Requirement already satisfied: cwl-utils==0.21 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 52)) (0.21) +Requirement already satisfied: cwltool==3.1.20221109155812 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 53)) (3.1.20221109155812) +Requirement already satisfied: cython==0.29.34 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 54)) (0.29.34) +Requirement already satisfied: decorator==5.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 55)) (5.1.1) +Requirement already satisfied: defusedxml==0.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 56)) (0.7.1) +Requirement already satisfied: deprecation==2.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 57)) (2.1.0) +Requirement already satisfied: dictobj==0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 58)) (0.4) +Requirement already satisfied: dnspython==2.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 59)) (2.3.0) +Requirement already satisfied: docopt==0.6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 60)) (0.6.2) +Requirement already satisfied: docutils==0.16 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 61)) (0.16) +Requirement already satisfied: ecdsa==0.18.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 62)) (0.18.0) +Requirement already satisfied: edam-ontology==1.25.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 63)) (1.25.2) +Requirement already satisfied: email-validator==1.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 64)) (1.3.0) +Requirement already satisfied: fastapi-utils==0.2.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 65)) (0.2.1) +Requirement already satisfied: fastapi==0.91.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 66)) (0.91.0) +Requirement already satisfied: flupy==1.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 67)) (1.2.0) +Requirement already satisfied: frozenlist==1.3.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 68)) (1.3.3) +Requirement already satisfied: fs==2.4.16 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 69)) (2.4.16) +Requirement already satisfied: funcsigs==1.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 70)) (1.0.2) +Requirement already satisfied: future==0.18.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 71)) (0.18.3) +Requirement already satisfied: galaxy-sequence-utils==1.1.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 72)) (1.1.5) +Requirement already satisfied: galaxy2cwl==0.1.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 73)) (0.1.4) +Requirement already satisfied: gravity==1.0.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 74)) (1.0.3) +Requirement already satisfied: greenlet==2.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 75)) (2.0.1) +Requirement already satisfied: gunicorn==20.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 76)) (20.1.0) +Requirement already satisfied: gxformat2==0.18.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 77)) (0.18.0) +Requirement already satisfied: h11==0.14.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 78)) (0.14.0) +Requirement already satisfied: h5py==3.8.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 79)) (3.8.0) +Requirement already satisfied: humanfriendly==10.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 80)) (10.0) +Requirement already satisfied: idna==3.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 81)) (3.4) +Requirement already satisfied: importlib-metadata==4.13.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 82)) (4.13.0) +Requirement already satisfied: importlib-resources==5.10.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 83)) (5.10.2) +Requirement already satisfied: isa-rwval==0.10.10 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 84)) (0.10.10) +Requirement already satisfied: isodate==0.6.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 85)) (0.6.1) +Requirement already satisfied: jinja2==3.1.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 86)) (3.1.2) +Requirement already satisfied: jsonref==1.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 87)) (1.1.0) +Requirement already satisfied: jsonschema==4.17.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 88)) (4.17.3) +Requirement already satisfied: kombu==5.2.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 89)) (5.2.4) +Requirement already satisfied: lagom==2.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 90)) (2.2.0) +Requirement already satisfied: lockfile==0.12.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 91)) (0.12.2) +Requirement already satisfied: lxml==4.9.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 92)) (4.9.2) +Requirement already satisfied: mako==1.2.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 93)) (1.2.4) +Requirement already satisfied: markdown-it-py==2.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 94)) (2.1.0) +Requirement already satisfied: markdown==3.4.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 95)) (3.4.1) +Requirement already satisfied: markupsafe==2.1.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 96)) (2.1.2) +Requirement already satisfied: mdurl==0.1.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 97)) (0.1.2) +Requirement already satisfied: mercurial==6.3.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 98)) (6.3.2) +Requirement already satisfied: mistune==2.0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 99)) (2.0.4) +Requirement already satisfied: mrcfile==1.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 100)) (1.4.3) +Requirement already satisfied: msgpack==1.0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 101)) (1.0.4) +Requirement already satisfied: multidict==6.0.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 102)) (6.0.4) +Requirement already satisfied: mypy-extensions==0.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 103)) (0.4.3) +Requirement already satisfied: networkx==2.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 104)) (2.5) +Requirement already satisfied: nodeenv==1.7.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 105)) (1.7.0) +Requirement already satisfied: numpy==1.24.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 107)) (1.24.1) +Requirement already satisfied: oauthlib==3.2.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 108)) (3.2.2) +Requirement already satisfied: oyaml==1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 109)) (1.0) +Requirement already satisfied: packaging==21.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 110)) (21.3) +Requirement already satisfied: paramiko==3.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 111)) (3.0.0) +Requirement already satisfied: parse==1.19.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 112)) (1.19.0) +Requirement already satisfied: parsley==1.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 113)) (1.3) +Requirement already satisfied: paste==3.5.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 114)) (3.5.2) +Requirement already satisfied: pastedeploy==3.0.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 115)) (3.0.1) +Requirement already satisfied: pbr==5.11.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 116)) (5.11.1) +Requirement already satisfied: pebble==5.0.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 117)) (5.0.3) +Requirement already satisfied: pkgutil-resolve-name==1.3.10 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 118)) (1.3.10) +Requirement already satisfied: prompt-toolkit==3.0.36 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 119)) (3.0.36) +Requirement already satisfied: prov==1.5.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 120)) (1.5.1) +Requirement already satisfied: psutil==5.9.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 121)) (5.9.4) +Requirement already satisfied: pulsar-galaxy-lib==0.15.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 122)) (0.15.5) +Requirement already satisfied: pyasn1==0.4.8 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 123)) (0.4.8) +Requirement already satisfied: pycparser==2.21 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 124)) (2.21) +Requirement already satisfied: pycryptodome==3.16.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 125)) (3.16.0) +Requirement already satisfied: pydantic-tes==0.1.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 126)) (0.1.5) +Requirement already satisfied: pydantic==1.10.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 127)) (1.10.4) +Requirement already satisfied: pydot==1.4.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 129)) (1.4.2) +Requirement already satisfied: pyeventsystem==0.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 130)) (0.1.0) +Requirement already satisfied: pyfaidx==0.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 131)) (0.7.1) +Requirement already satisfied: pygments==2.14.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 132)) (2.14.0) +Requirement already satisfied: pyjwt==2.6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 133)) (2.6.0) +Requirement already satisfied: pykwalify==1.8.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 134)) (1.8.0) +Requirement already satisfied: pylibmagic==0.2.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 135)) (0.2.2) +Requirement already satisfied: pynacl==1.5.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 136)) (1.5.0) +Requirement already satisfied: pyparsing==3.0.9 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 137)) (3.0.9) +Requirement already satisfied: pyrsistent==0.19.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 140)) (0.19.3) +Requirement already satisfied: pysam==0.21.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 141)) (0.21.0) +Requirement already satisfied: python-dateutil==2.8.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 142)) (2.8.2) +Requirement already satisfied: python-jose==3.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 143)) (3.3.0) +Requirement already satisfied: python-magic==0.4.27 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 144)) (0.4.27) +Requirement already satisfied: python-multipart==0.0.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 145)) (0.0.7) +Requirement already satisfied: python3-openid==3.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 146)) (3.2.0) +Requirement already satisfied: pytz==2022.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 147)) (2022.7.1) +Requirement already satisfied: pyyaml==6.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 148)) (6.0) +Requirement already satisfied: pyzmq==25.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 149)) (25.0.0) +Requirement already satisfied: rdflib==6.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 150)) (6.2.0) +Requirement already satisfied: refgenconf==0.12.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 151)) (0.12.2) +Requirement already satisfied: repoze-lru==0.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 152)) (0.7) +Requirement already satisfied: requests-oauthlib==1.3.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 153)) (1.3.1) +Requirement already satisfied: requests-toolbelt==0.10.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 154)) (0.10.1) +Requirement already satisfied: requests-unixsocket==0.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 155)) (0.3.0) +Requirement already satisfied: requests==2.28.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 156)) (2.28.2) +Requirement already satisfied: rich==13.2.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 157)) (13.2.0) +Requirement already satisfied: rocrate==0.7.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 158)) (0.7.0) +Requirement already satisfied: routes==2.5.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 159)) (2.5.1) +Requirement already satisfied: rsa==4.9 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 160)) (4.9) +Requirement already satisfied: ruamel-yaml-clib==0.2.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 161)) (0.2.7) +Requirement already satisfied: ruamel-yaml==0.17.21 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 162)) (0.17.21) +Requirement already satisfied: schema-salad==8.3.20230109181936 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 163)) (8.3.20230109181936) +Requirement already satisfied: setuptools-scm==5.0.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 164)) (5.0.2) +Requirement already satisfied: setuptools==66.1.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 165)) (66.1.1) +Requirement already satisfied: shellescape==3.8.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 166)) (3.8.1) +Requirement already satisfied: six==1.16.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 167)) (1.16.0) +Requirement already satisfied: sniffio==1.3.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 168)) (1.3.0) +Requirement already satisfied: social-auth-core==4.0.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from social-auth-core[openidconnect]==4.0.3->-r requirements.txt (line 169)) (4.0.3) +Requirement already satisfied: sortedcontainers==2.4.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 170)) (2.4.0) +Requirement already satisfied: sqlalchemy-migrate==0.13.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 171)) (0.13.0) +Requirement already satisfied: sqlalchemy==1.4.46 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 172)) (1.4.46) +Requirement already satisfied: sqlitedict==2.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 173)) (2.1.0) +Requirement already satisfied: sqlparse==0.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 174)) (0.4.3) +Requirement already satisfied: starlette-context==0.3.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 175)) (0.3.5) +Requirement already satisfied: starlette==0.24.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 176)) (0.24.0) +Requirement already satisfied: supervisor==4.2.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 177)) (4.2.5) +Requirement already satisfied: svgwrite==1.4.3 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 178)) (1.4.3) +Requirement already satisfied: tempita==0.5.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 179)) (0.5.2) +Requirement already satisfied: tenacity==8.1.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 180)) (8.1.0) +Requirement already satisfied: tifffile==2021.11.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 181)) (2021.11.2) +Requirement already satisfied: tinydb==4.7.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 182)) (4.7.1) +Requirement already satisfied: tornado==6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 183)) (6.2) +Requirement already satisfied: tqdm==4.64.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 184)) (4.64.1) +Requirement already satisfied: tuspy==1.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 185)) (1.0.0) +Requirement already satisfied: tuswsgi==0.5.5 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 186)) (0.5.5) +Requirement already satisfied: typing-extensions==4.4.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 187)) (4.4.0) +Requirement already satisfied: tzlocal==2.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 188)) (2.1) +Requirement already satisfied: ubiquerg==0.6.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 189)) (0.6.2) +Requirement already satisfied: urllib3==1.26.14 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 190)) (1.26.14) +Requirement already satisfied: uvicorn==0.20.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 191)) (0.20.0) +Requirement already satisfied: uvloop==0.17.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 192)) (0.17.0) +Requirement already satisfied: vine==5.0.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 193)) (5.0.0) +Requirement already satisfied: wcwidth==0.2.6 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 194)) (0.2.6) +Requirement already satisfied: webencodings==0.5.1 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 195)) (0.5.1) +Requirement already satisfied: webob==1.8.7 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 196)) (1.8.7) +Requirement already satisfied: whoosh==2.7.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 197)) (2.7.4) +Requirement already satisfied: yacman==0.8.4 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 198)) (0.8.4) +Requirement already satisfied: yarl==1.8.2 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 199)) (1.8.2) +Requirement already satisfied: zipp==3.11.0 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 200)) (3.11.0) +Requirement already satisfied: zipstream-new==1.1.8 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r requirements.txt (line 201)) (1.1.8) +Requirement already satisfied: zstandard>=0.15 in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from conda-package-streaming==0.7.0->-r requirements.txt (line 49)) (0.22.0) +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple +Requirement already satisfied: watchdog in /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages (from -r /dev/stdin (line 1)) (4.0.0) +The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable. +Activating virtualenv at /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3 +Adding service gunicorn +Adding service celery +Adding service celery-beat +Executing: galaxy +2024-04-17 16:40:05,126 WARN No file matches via include "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/*.conf" +2024-04-17 16:40:05,127 INFO Included extra file "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery-beat_celery-beat.conf" during parsing +2024-04-17 16:40:05,127 INFO Included extra file "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery_celery.conf" during parsing +2024-04-17 16:40:05,127 INFO Included extra file "/scratch/rico/tmp/tmp12w4107b/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_gunicorn_gunicorn.conf" during parsing +2024-04-17 16:40:05,323 INFO RPC interface 'supervisor' initialized +2024-04-17 16:40:05,324 CRIT Server 'unix_http_server' running without any HTTP authentication checking +2024-04-17 16:40:05,324 INFO supervisord started with pid 100445 +2024-04-17 16:40:05,764 INFO spawned: 'celery' with pid 100447 +2024-04-17 16:40:05,766 INFO spawned: 'celery-beat' with pid 100448 +2024-04-17 16:40:05,769 INFO spawned: 'gunicorn' with pid 100449 +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/scratch/rico/tmp/tmp12w4107b/galaxy.yml celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/scratch/rico/tmp/tmp12w4107b/galaxy.yml gunicorn 'galaxy.webapps.galaxy.fast_factory:factory()' --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b 127.0.0.1:9090 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/scratch/rico/tmp/tmp12w4107b/galaxy.yml celery --app galaxy.celery beat --loglevel DEBUG --schedule /scratch/rico/tmp/tmp12w4107b/gravity/celery-beat-schedule + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +2024-04-17 16:40:15,880 INFO success: celery entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) +2024-04-17 16:40:15,880 INFO success: celery-beat entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) +2024-04-17 16:40:20,886 INFO success: gunicorn entered RUNNING state, process has stayed up for > than 15 seconds (startsecs) +[2024-04-17 16:40:22,090: DEBUG/MainProcess] Setting default socket timeout to 30 +[2024-04-17 16:40:22,091: INFO/MainProcess] beat: Starting... + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 16:40:22,097: DEBUG/MainProcess] | Worker: Preparing bootsteps. +[2024-04-17 16:40:22,177: DEBUG/MainProcess] | Worker: Building graph... +[2024-04-17 16:40:22,178: DEBUG/MainProcess] | Worker: New boot order: {Timer, Hub, Pool, Autoscaler, Beat, StateDB, Consumer} + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 16:40:22,205: DEBUG/MainProcess] Current schedule: +<ScheduleEntry: prune-history-audit-table galaxy.prune_history_audit_table() <freq: 1.00 hour> +<ScheduleEntry: cleanup-short-term-storage galaxy.cleanup_short_term_storage() <freq: 1.00 hour> +<ScheduleEntry: celery.backend_cleanup celery.backend_cleanup() <crontab: 0 4 * * * (m/h/d/dM/MY)> +[2024-04-17 16:40:22,205: DEBUG/MainProcess] beat: Ticking with max interval->5.00 minutes +[2024-04-17 16:40:22,207: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 16:40:22,448: DEBUG/MainProcess] | Consumer: Preparing bootsteps. +[2024-04-17 16:40:22,449: DEBUG/MainProcess] | Consumer: Building graph... +[2024-04-17 16:40:22,628: DEBUG/MainProcess] | Consumer: New boot order: {Connection, Events, Mingle, Gossip, Tasks, Control, Agent, Heart, event loop} + + -------------- celery@laila v5.2.7 (dawn-chorus) +--- ***** ----- +-- ******* ---- Linux-4.19.0-26-amd64-x86_64-with-glibc2.28 2024-04-17 16:40:22 +- *** --- * --- +- ** ---------- [config] +- ** ---------- .> app: galaxy:0x7faa418fc190 +- ** ---------- .> transport: sqlalchemy+sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite +- ** ---------- .> results: disabled:// +- *** --- * --- .> concurrency: 2 (thread) +-- ******* ---- .> task events: OFF (enable -E to monitor tasks in this worker) +--- ***** ----- + -------------- [queues] + .> celery exchange=celery(direct) key=celery + .> galaxy.external exchange=galaxy.external(direct) key=galaxy.external + .> galaxy.internal exchange=galaxy.internal(direct) key=galaxy.internal + +[tasks] + . celery.accumulate + . celery.backend_cleanup + . celery.chain + . celery.chord + . celery.chord_unlock + . celery.chunks + . celery.group + . celery.map + . celery.starmap + . galaxy.change_datatype + . galaxy.cleanup_short_term_storage + . galaxy.compute_dataset_hash + . galaxy.export_history + . galaxy.fetch_data + . galaxy.finish_job + . galaxy.import_data_bundle + . galaxy.import_model_store + . galaxy.materialize + . galaxy.prepare_dataset_collection_download + . galaxy.prepare_history_content_download + . galaxy.prepare_history_download + . galaxy.prepare_invocation_download + . galaxy.prepare_pdf_download + . galaxy.prune_history_audit_table + . galaxy.purge_hda + . galaxy.recalculate_user_disk_usage + . galaxy.set_job_metadata + . galaxy.set_metadata + . galaxy.setup_fetch_data + . galaxy.touch + . galaxy.write_history_content_to + . galaxy.write_history_to + . galaxy.write_invocation_to + +[2024-04-17 16:40:22,684: DEBUG/MainProcess] | Worker: Starting Pool +[2024-04-17 16:40:22,685: DEBUG/MainProcess] ^-- substep ok +[2024-04-17 16:40:22,685: DEBUG/MainProcess] | Worker: Starting Consumer +[2024-04-17 16:40:22,685: DEBUG/MainProcess] | Consumer: Starting Connection +[2024-04-17 16:40:22,691: INFO/MainProcess] Connected to sqlalchemy+sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite +[2024-04-17 16:40:22,692: DEBUG/MainProcess] ^-- substep ok +[2024-04-17 16:40:22,692: DEBUG/MainProcess] | Consumer: Starting Events +[2024-04-17 16:40:22,692: DEBUG/MainProcess] ^-- substep ok +[2024-04-17 16:40:22,692: DEBUG/MainProcess] | Consumer: Starting Tasks +[2024-04-17 16:40:22,773: DEBUG/MainProcess] ^-- substep ok +[2024-04-17 16:40:22,773: DEBUG/MainProcess] | Consumer: Starting Heart +[2024-04-17 16:40:22,773: DEBUG/MainProcess] ^-- substep ok +[2024-04-17 16:40:22,773: DEBUG/MainProcess] | Consumer: Starting event loop +[2024-04-17 16:40:22,773: INFO/MainProcess] celery@laila ready. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +DEBUG:galaxy.app:python path is: /scratch/rico/galaxy, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/local/lib/python38.zip, /usr/local/lib/python3.8, /usr/local/lib/python3.8/lib-dynload, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages +DEBUG:galaxy.config:Configuration directory is /scratch/rico/tmp/tmp12w4107b +DEBUG:galaxy.config:Data directory is /scratch/rico/galaxy/database +DEBUG:galaxy.config:Managed config directory is /scratch/rico/tmp/tmp12w4107b +WARNING:galaxy.config:Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +DEBUG:galaxy.config:No extra version JSON file detected at /scratch/rico/galaxy/version.json +INFO:alembic.runtime.migration:Context impl SQLiteImpl. +INFO:alembic.runtime.migration:Will assume non-transactional DDL. +INFO:alembic.runtime.migration:Running stamp_revision -> caa7742f7bca +DEBUG:alembic.runtime.migration:new branch insert caa7742f7bca +INFO:alembic.runtime.migration:Context impl SQLiteImpl. +INFO:alembic.runtime.migration:Will assume non-transactional DDL. +INFO:alembic.runtime.migration:Running stamp_revision -> d4a650f47a3c +DEBUG:alembic.runtime.migration:new branch insert d4a650f47a3c +INFO:galaxy.app:Install database targeting Galaxy's database configuration. +DEBUG:galaxy.web_stack:GunicornApplicationStack initialized +galaxy.jobs DEBUG 2024-04-17 16:40:31,417 [pN:main,p:100449,tN:MainThread] Loading job configuration from /scratch/rico/tmp/tmp12w4107b/job_conf.xml +galaxy.jobs DEBUG 2024-04-17 16:40:31,418 [pN:main,p:100449,tN:MainThread] Read job configuration from file: /scratch/rico/tmp/tmp12w4107b/job_conf.xml +galaxy.web_stack.handlers INFO 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] default set to child with id or tag 'planemo_dest' +galaxy.jobs DEBUG 2024-04-17 16:40:31,426 [pN:main,p:100449,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-04-17 16:40:32,451 [pN:main,p:100449,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,495 [pN:main,p:100449,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,496 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,497 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,498 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,499 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,500 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,501 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,502 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,503 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,504 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,505 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,506 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,507 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,508 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,509 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,510 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,511 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,512 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,512 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,910 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,911 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,911 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,911 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,912 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,912 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,913 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,914 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,915 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,916 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,917 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,918 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,920 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,920 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,920 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,921 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,922 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,923 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,924 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,925 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,926 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,927 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,928 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,929 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,930 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,931 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,932 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,933 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,934 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,935 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,936 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,937 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,939 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,941 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,942 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,943 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,944 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,944 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,945 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,945 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,946 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,947 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,948 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,949 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,950 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,951 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,952 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,953 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,954 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,955 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,956 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,957 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,958 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,959 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,960 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,961 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:32,963 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,152 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,153 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,154 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,155 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,156 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,157 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,158 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,159 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,159 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,159 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,160 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,160 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,160 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,161 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,162 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,163 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,164 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,165 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,165 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,167 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,168 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,169 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,170 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,171 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,172 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,173 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,174 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,175 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,176 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,177 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,178 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,179 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,180 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,181 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,182 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,183 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,184 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,185 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,186 [pN:main,p:100449,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,191 [pN:main,p:100449,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,192 [pN:main,p:100449,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-04-17 16:40:33,192 [pN:main,p:100449,tN:MainThread] Loading references to tool sheds from /scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-04-17 16:40:33,192 [pN:main,p:100449,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-04-17 16:40:33,193 [pN:main,p:100449,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////scratch/rico/tmp/tmp12w4107b/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.visualization.genomes ERROR 2024-04-17 16:40:33,209 [pN:main,p:100449,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 218, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] The default shed tool config file (/scratch/rico/tmp/tmp12w4107b/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] Parsing the tool configuration /scratch/rico/tmp/tmp12w4107b/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,252 [pN:main,p:100449,tN:MainThread] Tool path for tool configuration /scratch/rico/tmp/tmp12w4107b/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,261 [pN:main,p:100449,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Loaded tool id: segalign, version: 0.1.2.1+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] The default shed tool config file (/scratch/rico/tmp/tmp12w4107b/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Parsing the tool configuration /scratch/rico/tmp/tmp12w4107b/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Tool path for shed tool configuration /scratch/rico/tmp/tmp12w4107b/shed_tools_conf.xml is /scratch/rico/tmp/tmp12w4107b/shed_tools +galaxy.tools WARNING 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] The default shed tool config file (/scratch/rico/tmp/tmp12w4107b/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Parsing the tool configuration /scratch/rico/tmp/tmp12w4107b/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Tool path for tool configuration /scratch/rico/tmp/tmp12w4107b/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,270 [pN:main,p:100449,tN:MainThread] Reading tools from config files finished (18.841 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,272 [pN:main,p:100449,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-04-17 16:40:33,273 [pN:main,p:100449,tN:MainThread] Loading EDAM tool panel finished (1.648 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-04-17 16:40:33,274 [pN:main,p:100449,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-04-17 16:40:33,274 [pN:main,p:100449,tN:MainThread] Loading EDAM tool panel finished (1.272 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-04-17 16:40:33,274 [pN:main,p:100449,tN:MainThread] Writing integrated tool panel config file to '/scratch/rico/tmp/tmp12w4107b/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-04-17 16:40:33,970 [pN:main,p:100449,tN:MainThread] Error parsing file /scratch/rico/tmp/tmp12w4107b +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 309, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/scratch/rico/tmp/tmp12w4107b", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-04-17 16:40:33,971 [pN:main,p:100449,tN:MainThread] There was an error parsing your Data Manager config file "/scratch/rico/tmp/tmp12w4107b": Document is empty, line 1, column 1 (tmp12w4107b, line 1) +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,973 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,974 [pN:main,p:100449,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,975 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,976 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,976 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,976 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,977 [pN:main,p:100449,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,977 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,978 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,978 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,978 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,979 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,979 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,980 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,980 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,980 [pN:main,p:100449,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,981 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,981 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,982 [pN:main,p:100449,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,982 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,982 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,983 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,984 [pN:main,p:100449,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,985 [pN:main,p:100449,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,985 [pN:main,p:100449,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,986 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,987 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,988 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,989 [pN:main,p:100449,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,990 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,990 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,991 [pN:main,p:100449,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,992 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,993 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,994 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,995 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,996 [pN:main,p:100449,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,998 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:33,999 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,000 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,001 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,002 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,003 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,003 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,004 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,005 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,005 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,006 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,007 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,008 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,008 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,010 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,011 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,011 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,012 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,013 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,013 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,014 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,016 [pN:main,p:100449,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,017 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,018 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,018 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,019 [pN:main,p:100449,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,020 [pN:main,p:100449,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,021 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,021 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,022 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,023 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,023 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,024 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,025 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,026 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,026 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,027 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,028 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,029 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,030 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,031 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,031 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,032 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,033 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,034 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,034 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,035 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,036 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,037 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,038 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,038 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,039 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,040 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,041 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,042 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,042 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,043 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,044 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,044 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,046 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,046 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,048 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,049 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,050 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,051 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,051 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,052 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,053 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,053 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,054 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,055 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,056 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,057 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,058 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,058 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,059 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,060 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,061 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,062 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,063 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,064 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,064 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,065 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,066 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,067 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,068 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,069 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,070 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,071 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,072 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,073 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,073 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,074 [pN:main,p:100449,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,075 [pN:main,p:100449,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,076 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,076 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,078 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,079 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,079 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,080 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,081 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,082 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,083 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,084 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,084 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,085 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,086 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,086 [pN:main,p:100449,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,087 [pN:main,p:100449,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,088 [pN:main,p:100449,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,089 [pN:main,p:100449,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,090 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,090 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,091 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,092 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,093 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,094 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,096 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,096 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,097 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,098 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,099 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,100 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,101 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,102 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,104 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,105 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,105 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,106 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,107 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,108 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,110 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,111 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,112 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,113 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,114 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,115 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,116 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,116 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,118 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,118 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,119 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,121 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,122 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,122 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,124 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,125 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,125 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,126 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,127 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,128 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,129 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,129 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,130 [pN:main,p:100449,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-04-17 16:40:34,131 [pN:main,p:100449,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,133 [pN:main,p:100449,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,133 [pN:main,p:100449,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,134 [pN:main,p:100449,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-04-17 16:40:34,135 [pN:main,p:100449,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,136 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,137 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,138 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,139 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,139 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,140 [pN:main,p:100449,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,140 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,140 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,141 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,142 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,143 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,144 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,145 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,145 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,147 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,149 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,150 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,153 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,154 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,156 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,158 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,160 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,160 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,161 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,162 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,163 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,164 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,165 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,167 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,169 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,171 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,173 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,175 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,176 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,178 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,180 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,182 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,183 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,185 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,187 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,189 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,190 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,191 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,192 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,193 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,194 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,195 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,195 [pN:main,p:100449,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,196 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-04-17 16:40:34,197 [pN:main,p:100449,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-04-17 16:40:34,220 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-04-17 16:40:34,237 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-04-17 16:40:34,250 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-04-17 16:40:34,261 [pN:main,p:100449,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-04-17 16:40:34,267 [pN:main,p:100449,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-04-17 16:40:34,267 [pN:main,p:100449,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-04-17 16:40:34,267 [pN:main,p:100449,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-04-17 16:40:34,269 [pN:main,p:100449,tN:MainThread] Galaxy app startup finished (5057.528 ms) +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,347 [pN:main,p:100449,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,348 [pN:main,p:100449,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,349 [pN:main,p:100449,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,350 [pN:main,p:100449,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,358 [pN:main,p:100449,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,359 [pN:main,p:100449,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,359 [pN:main,p:100449,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,360 [pN:main,p:100449,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,360 [pN:main,p:100449,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,375 [pN:main,p:100449,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,376 [pN:main,p:100449,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,377 [pN:main,p:100449,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,377 [pN:main,p:100449,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,511 [pN:main,p:100449,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-04-17 16:40:34,511 [pN:main,p:100449,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,134 [pN:main,p:100449,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,138 [pN:main,p:100449,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.config DEBUG 2024-04-17 16:40:35,174 [pN:main,p:100449,tN:MainThread] Configuration directory is /scratch/rico/tmp/tmp12w4107b +galaxy.config DEBUG 2024-04-17 16:40:35,175 [pN:main,p:100449,tN:MainThread] Data directory is /scratch/rico/galaxy/database +galaxy.config DEBUG 2024-04-17 16:40:35,175 [pN:main,p:100449,tN:MainThread] Managed config directory is /scratch/rico/tmp/tmp12w4107b +galaxy.config WARNING 2024-04-17 16:40:35,203 [pN:main,p:100449,tN:MainThread] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +galaxy.config DEBUG 2024-04-17 16:40:35,204 [pN:main,p:100449,tN:MainThread] No extra version JSON file detected at /scratch/rico/galaxy/version.json +galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,231 [pN:main,p:100449,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,232 [pN:main,p:100449,tN:MainThread] Enabling 'userskeys' controller, class: User +galaxy.web.framework.base DEBUG 2024-04-17 16:40:35,232 [pN:main,p:100449,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,477 [pN:main,p:100449,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,500 [pN:main,p:100449,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,602 [pN:main,p:100449,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,725 [pN:main,p:100449,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,740 [pN:main,p:100449,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,885 [pN:main,p:100449,tN:MainThread] Enabling 'groups' API controller, class: GroupAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,886 [pN:main,p:100449,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,888 [pN:main,p:100449,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,888 [pN:main,p:100449,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,889 [pN:main,p:100449,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,890 [pN:main,p:100449,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:37,891 [pN:main,p:100449,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,060 [pN:main,p:100449,tN:MainThread] Enabling 'cloud' API controller, class: CloudController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,323 [pN:main,p:100449,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,323 [pN:main,p:100449,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,324 [pN:main,p:100449,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:38,338 [pN:main,p:100449,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,137 [pN:main,p:100449,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,199 [pN:main,p:100449,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,200 [pN:main,p:100449,tN:MainThread] Enabling 'display_applications' API controller, class: DisplayApplicationsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:39,601 [pN:main,p:100449,tN:MainThread] Enabling 'search' API controller, class: SearchController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:40,109 [pN:main,p:100449,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:40,439 [pN:main,p:100449,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:40,439 [pN:main,p:100449,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,828 [pN:main,p:100449,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,828 [pN:main,p:100449,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,828 [pN:main,p:100449,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,909 [pN:main,p:100449,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,909 [pN:main,p:100449,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:41,909 [pN:main,p:100449,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,047 [pN:main,p:100449,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,081 [pN:main,p:100449,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,082 [pN:main,p:100449,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,082 [pN:main,p:100449,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,083 [pN:main,p:100449,tN:MainThread] Enabling 'history_content_tags' API controller, class: HistoryContentTagsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,083 [pN:main,p:100449,tN:MainThread] Enabling 'history_tags' API controller, class: HistoryTagsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,083 [pN:main,p:100449,tN:MainThread] Enabling 'workflow_tags' API controller, class: WorkflowTagsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,092 [pN:main,p:100449,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-04-17 16:40:42,455 [pN:main,p:100449,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,790 [pN:main,p:100449,tN:MainThread] Enabling 'paste.httpexceptions' middleware +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,791 [pN:main,p:100449,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'RecursiveMiddleware' middleware +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,817 [pN:main,p:100449,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-04-17 16:40:42,818 [pN:main,p:100449,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-04-17 16:40:42,818 [pN:main,p:100449,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140179676497728)> is alive. +/scratch/rico/galaxy/lib/galaxy/webapps/openapi/utils.py:463: UserWarning: Merging operation with id fetch_json_api_tools_fetch_post with operation with id fetch_form_api_tools_fetch_post. + warnings.warn(message) +[2024-04-17 16:40:45 -0400] [100449] [INFO] Starting gunicorn 20.1.0 +[2024-04-17 16:40:45 -0400] [100449] [INFO] Listening at: http://127.0.0.1:9090 (100449) +[2024-04-17 16:40:45 -0400] [100449] [INFO] Using worker: galaxy.webapps.galaxy.workers.Worker +[2024-04-17 16:40:45 -0400] [100659] [INFO] Booting worker with pid: 100659 +galaxy.web_stack DEBUG 2024-04-17 16:40:45,637 [pN:main.1,p:100659,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-04-17 16:40:45,638 [pN:main.1,p:100659,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-04-17 16:40:45,639 [pN:main.1,p:100659,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-04-17 16:40:45,662 [pN:main.1,p:100659,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-04-17 16:40:45,662 [pN:main.1,p:100659,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'planemo_runner' +galaxy.jobs.handler DEBUG 2024-04-17 16:40:45,663 [pN:main.1,p:100659,tN:Thread-2] Loaded job runners plugins: planemo_runner +galaxy.jobs.handler INFO 2024-04-17 16:40:45,663 [pN:main.1,p:100659,tN:Thread-2] job handler stop queue started +galaxy.jobs.runners DEBUG 2024-04-17 16:40:45,664 [pN:main.1,p:100659,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-04-17 16:40:45,665 [pN:main.1,p:100659,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-04-17 16:40:47,126 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-04-17 16:40:47,126 [pN:main.1,p:100659,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-04-17 16:40:47,132 [pN:main.1,p:100659,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-04-17 16:40:47,135 [pN:main.1,p:100659,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): _default_, None +galaxy.queue_worker INFO 2024-04-17 16:40:47,144 [pN:main.1,p:100659,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker INFO 2024-04-17 16:40:47,154 [pN:main.1,p:100659,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +[2024-04-17 16:40:47 -0400] [100659] [INFO] Started server process [100659] +[2024-04-17 16:40:47 -0400] [100659] [INFO] Waiting for application startup. +[2024-04-17 16:40:47 -0400] [100659] [INFO] Application startup complete. +galaxy.model.database_heartbeat DEBUG 2024-04-17 16:40:47,249 [pN:main.1,p:100659,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.web_stack INFO 2024-04-17 16:40:47,281 [pN:main.1,p:100659,tN:Thread-2] Galaxy server instance 'main.1' is running +serving on http://127.0.0.1:9090 +galaxy.queue_worker INFO 2024-04-17 16:40:47,293 [pN:main.1,p:100659,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-04-17 16:40:47,293 [pN:main.1,p:100659,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-04-17 16:40:47,302 [pN:main.1,p:100659,tN:Thread-1] Toolbox index of panel default finished (8.935 ms) +galaxy.tools.search DEBUG 2024-04-17 16:40:47,303 [pN:main.1,p:100659,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-04-17 16:40:47,306 [pN:main.1,p:100659,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.617 ms) +galaxy.tools.search DEBUG 2024-04-17 16:40:47,306 [pN:main.1,p:100659,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-04-17 16:40:47,310 [pN:main.1,p:100659,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.674 ms) +galaxy.webapps.base.webapp DEBUG 2024-04-17 16:41:35,014 [pN:main.1,p:100659,tN:WSGI_0] Received invalid session key '{secure_id}', setting a new session key +/scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:740: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + self.sa_session.query(self.app.model.User) +/scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:329: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + if config.use_remote_user and self.galaxy_session.user.deleted: +uvicorn.access INFO 2024-04-17 16:41:35,220 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET / HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,236 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /static/dist/base.css?v=1713286767000 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,259 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /static/dist/analysis.bundled.js?v=1713286767000 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,717 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/webhooks HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,771 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,781 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/users/current HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,809 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40036 - "GET /welcome HTTP/1.1" 302 +uvicorn.access INFO 2024-04-17 16:41:35,834 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40050 - "GET /api/webhooks HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,846 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /api/tools?in_panel=true&view=default HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,862 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40026 - "GET /api/configuration HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:35,887 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/histories?view=summary HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/model/__init__.py:2895: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + rval = db_session.query( +uvicorn.access INFO 2024-04-17 16:41:35,939 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40064 - "GET /history/current_history_json HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/managers/history_contents.py:259: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + contents_results = self._union_of_contents_query(container, **kwargs).all() +uvicorn.access INFO 2024-04-17 16:41:36,075 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40064 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:41:35.459Z HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:36,082 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:36,178 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38066 - "GET /api/datatypes?extension_only=False HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:36,179 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40064 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:36,284 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40050 - "GET /api/genomes HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:36,313 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38068 - "GET /api/histories/d23b2492b9db9f5f?view=summary&keys=size,contents_active,user_id HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:36,318 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40026 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:39,142 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40080 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:42,174 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40092 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:45,215 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40096 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:45,771 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40096 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:48,250 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51078 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:51,288 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51082 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:54,323 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51084 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:55,773 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51084 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:41:57,358 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51084 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:00,393 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:52308 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:03,436 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:52322 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:05,772 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35856 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:06,471 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35856 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:09,506 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35870 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:12,549 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35880 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:15,583 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35886 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:15,771 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35886 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:18,618 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42486 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:21,651 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42494 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:24,686 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42498 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:25,775 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42498 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:27,722 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42498 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:30,758 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35394 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:33,791 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35400 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:35,775 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35400 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:36,826 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:35400 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:39,858 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53056 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:42,895 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53072 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +galaxy.files.uris DEBUG 2024-04-17 16:42:45,545 [pN:main.1,p:100659,tN:MainThread] parsed url, port: hgdownload.soe.ucsc.edu : None +galaxy.files.uris DEBUG 2024-04-17 16:42:45,546 [pN:main.1,p:100659,tN:MainThread] parsed url, port: hgdownload.soe.ucsc.edu : None +galaxy.tools INFO 2024-04-17 16:42:45,559 [pN:main.1,p:100659,tN:MainThread] Validated and populated state for tool request (0.162 ms) +galaxy.tools.actions.upload DEBUG 2024-04-17 16:42:45,578 [pN:main.1,p:100659,tN:MainThread] Persisted uploads (0.012 ms) +galaxy.tools.actions.upload DEBUG 2024-04-17 16:42:45,750 [pN:main.1,p:100659,tN:MainThread] Created upload job (15.530 ms) +galaxy.tools.execute DEBUG 2024-04-17 16:42:45,750 [pN:main.1,p:100659,tN:MainThread] Tool __DATA_FETCH__ created job None (172.521 ms) +galaxy.web_stack.handlers INFO 2024-04-17 16:42:45,786 [pN:main.1,p:100659,tN:MainThread] (Job[id=1,tool_id=__DATA_FETCH__]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-04-17 16:42:45,797 [pN:main.1,p:100659,tN:MainThread] Created 1 job(s) for tool __DATA_FETCH__ request (237.858 ms) +uvicorn.access INFO 2024-04-17 16:42:45,844 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "POST /api/tools/fetch HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:45,888 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59400 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:45,906 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "GET /history/current_history_json?since=2024-04-17T20:41:35.000889 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:45,970 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:41:35.946Z HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:46,022 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53078 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:46,063 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59400 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-04-17 16:42:46,325 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: planemo_dest +galaxy.jobs.handler DEBUG 2024-04-17 16:42:46,347 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to planemo_runner runner +galaxy.jobs DEBUG 2024-04-17 16:42:46,382 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: planemo_dest) +galaxy.jobs DEBUG 2024-04-17 16:42:46,407 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-04-17 16:42:46,415 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [1] queued (67.323 ms) +galaxy.jobs.handler INFO 2024-04-17 16:42:46,424 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.jobs DEBUG 2024-04-17 16:42:46,672 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (217.489 ms) +galaxy.jobs.command_factory INFO 2024-04-17 16:42:46,695 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/lib/galaxy/tools/data_fetch.py' --galaxy-root '/scratch/rico/galaxy' --datatypes-registry '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/registry.xml' --request-version '1' --request '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/configs/tmpsgrlxr_o'] +galaxy.jobs.runners DEBUG 2024-04-17 16:42:46,842 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/galaxy_1.ec; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-04-17 16:42:46,863 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (1) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/galaxy_1.sh +uvicorn.access INFO 2024-04-17 16:42:49,080 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59408 - "GET /history/current_history_json?since=2024-04-17T20:42:45.000727 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:49,142 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59408 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:42:45.913Z HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:49,195 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59408 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:49,233 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59410 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:52,194 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59426 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:55,228 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59434 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:55,779 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59434 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:42:58,263 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34840 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:01,306 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34844 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:04,343 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34846 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:05,783 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34846 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:07,373 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34846 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:10,410 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33714 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:13,443 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33730 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:15,794 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33358 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:16,477 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33358 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:19,519 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33374 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:22,560 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33382 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:25,594 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33388 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:25,782 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33388 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:28,627 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56312 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:31,663 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56328 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:34,699 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56330 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:35,786 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56330 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:37,731 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:56330 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:40,766 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33212 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:43,801 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33216 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:45,788 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33216 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:46,834 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33216 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:49,870 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44378 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:52,907 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44384 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 16:43:54,966 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 100756 +galaxy.jobs.runners.local DEBUG 2024-04-17 16:43:54,967 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-04-17 16:43:55,001 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/outputs/dataset_f942d97c-6c27-4ee4-8ad1-bb1227186612.dat to /scratch/rico/tmp/tmp12w4107b/files/f/9/4/dataset_f942d97c-6c27-4ee4-8ad1-bb1227186612.dat +galaxy.jobs DEBUG 2024-04-17 16:43:55,001 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/outputs/dataset_fe981322-ad11-477a-8c4f-623aad83cb29.dat to /scratch/rico/tmp/tmp12w4107b/files/f/e/9/dataset_fe981322-ad11-477a-8c4f-623aad83cb29.dat +galaxy.tool_util.provided_metadata DEBUG 2024-04-17 16:43:55,033 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'hg38.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [{'source_uri': 'https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz'}], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/working/gx_file_streamqer1e837', 'object_id': 1}, {'name': 'mm39.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [{'source_uri': 'https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa.gz'}], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/1/working/gx_file_streambdx1tghy', 'object_id': 2}]}]}] +uvicorn.access INFO 2024-04-17 16:43:55,803 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42166 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:55,939 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42166 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:43:58,978 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42170 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:02,016 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42176 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:05,063 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42188 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:05,792 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42188 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:08,102 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51382 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:11,137 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51388 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:14,172 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51398 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:15,808 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51398 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:17,204 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51398 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:20,246 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37780 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:23,288 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37796 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:25,802 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59346 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:26,324 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59346 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:29,368 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59358 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:32,403 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59370 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:35,436 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59372 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:35,802 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59372 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:38,463 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44694 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:41,501 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44704 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:44,545 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44706 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:45,800 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44706 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:47,586 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44706 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:50,623 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43634 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:53,663 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43650 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:55,810 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36894 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:56,696 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36894 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:44:59,744 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36896 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:02,784 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:36902 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:05,816 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48862 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:05,826 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48874 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:08,859 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48882 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:11,897 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48894 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:14,962 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48898 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:15,805 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48898 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:17,999 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39084 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:21,032 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39092 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 16:45:22,308: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 16:45:22,309: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-04-17 16:45:24,069 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39094 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:25,805 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39094 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:27,103 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39094 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:30,140 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:50906 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:33,179 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:50910 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:35,820 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32770 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:36,219 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32770 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:39,259 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32782 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:42,291 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32796 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:45,332 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32808 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:45,814 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:32808 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:48,369 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49528 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:51,409 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49542 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:54,449 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49548 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:55,810 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49548 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:45:57,484 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:49548 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:00,521 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42846 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:03,558 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:42852 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:05,812 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51930 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:06,594 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51930 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:09,629 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51936 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:12,665 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51944 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +galaxy.jobs DEBUG 2024-04-17 16:46:13,804 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (138813.240 ms) +uvicorn.access INFO 2024-04-17 16:46:15,719 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48740 - "GET /history/current_history_json?since=2024-04-17T20:42:46.000928 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:15,780 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48740 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:42:49.088Z HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:15,833 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48742 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:15,838 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48740 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:15,888 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48746 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:18,833 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48754 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:21,869 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:22,229 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48782 - "GET /api/users/current HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:22,255 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48776 - "GET /api/configuration HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:22,298 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48798 - "GET /api/histories?view=summary HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:22,380 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48782 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:22,939 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /api/tools/segalign/build?version=0.1.2.1+galaxy0&tool_version=0.1.2.1+galaxy0 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:24,127 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /api/tools/segalign/citations HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:24,141 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /static/dist/CitationJS.bundled.js HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:24,902 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:25,130 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /static/dist/56d4c7ce2d3591a02107.gif HTTP/1.1" 304 +uvicorn.access INFO 2024-04-17 16:46:25,811 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:26,581 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "POST /api/tools/segalign/build HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:27,963 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:48766 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:31,000 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60936 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:34,050 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200 +galaxy.tools INFO 2024-04-17 16:46:35,234 [pN:main.1,p:100659,tN:WSGI_3] Validated and populated state for tool request (26.011 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,258 [pN:main.1,p:100659,tN:WSGI_3] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (1.010 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,258 [pN:main.1,p:100659,tN:WSGI_3] Added output datasets to history (0.253 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,260 [pN:main.1,p:100659,tN:WSGI_3] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.278 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,284 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for job Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (24.575 ms) +galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,297 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (12.006 ms) +galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,297 [pN:main.1,p:100659,tN:WSGI_3] (Job[id=2,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.actions INFO 2024-04-17 16:46:35,464 [pN:main.1,p:100659,tN:WSGI_3] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (0.846 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,465 [pN:main.1,p:100659,tN:WSGI_3] Added output datasets to history (0.251 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,466 [pN:main.1,p:100659,tN:WSGI_3] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.090 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,485 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for job Job[id=3,tool_id=CONVERTER_gz_to_uncompressed] (19.052 ms) +galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,496 [pN:main.1,p:100659,tN:WSGI_3] Flushed transaction for Job[id=3,tool_id=CONVERTER_gz_to_uncompressed] (10.959 ms) +galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,496 [pN:main.1,p:100659,tN:WSGI_3] (Job[id=3,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.security.object_wrapper WARNING 2024-04-17 16:46:35,592 [pN:main.1,p:100659,tN:WSGI_3] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.tools.actions INFO 2024-04-17 16:46:35,596 [pN:main.1,p:100659,tN:WSGI_3] Handled output named segalign_diagonal_partition_output for tool segalign (3.076 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,602 [pN:main.1,p:100659,tN:WSGI_3] Added output datasets to history (6.030 ms) +galaxy.tools.actions INFO 2024-04-17 16:46:35,604 [pN:main.1,p:100659,tN:WSGI_3] Setup for job Job[unflushed,tool_id=segalign] complete, ready to be enqueued (1.362 ms) +galaxy.tools.execute DEBUG 2024-04-17 16:46:35,604 [pN:main.1,p:100659,tN:WSGI_3] Tool segalign created job None (360.449 ms) +galaxy.web_stack.handlers INFO 2024-04-17 16:46:35,622 [pN:main.1,p:100659,tN:WSGI_3] (Job[id=4,tool_id=segalign]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-04-17 16:46:35,628 [pN:main.1,p:100659,tN:WSGI_3] Created 1 job(s) for tool segalign request (394.017 ms) +uvicorn.access INFO 2024-04-17 16:46:35,653 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "POST /api/tools HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:35,689 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55074 - "GET /static/dist/b7327582a95704df7902.png HTTP/1.1" 304 +uvicorn.access INFO 2024-04-17 16:46:35,705 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /history/current_history_json?since=2024-04-17T20:46:13.000759 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:35,768 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:46:15.726Z HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:35,859 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:60952 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:35,877 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55076 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:35,910 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55074 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-04-17 16:46:35,917 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: planemo_dest +galaxy.jobs.handler DEBUG 2024-04-17 16:46:35,933 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to planemo_runner runner +galaxy.jobs DEBUG 2024-04-17 16:46:35,965 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: planemo_dest) +galaxy.jobs DEBUG 2024-04-17 16:46:35,976 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-04-17 16:46:35,985 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [2] queued (52.149 ms) +galaxy.jobs.handler INFO 2024-04-17 16:46:35,995 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.jobs.mapper DEBUG 2024-04-17 16:46:36,022 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: planemo_dest +galaxy.jobs.handler DEBUG 2024-04-17 16:46:36,048 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to planemo_runner runner +galaxy.jobs DEBUG 2024-04-17 16:46:36,121 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: planemo_dest) +galaxy.jobs DEBUG 2024-04-17 16:46:36,142 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-04-17 16:46:36,158 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [3] queued (109.619 ms) +galaxy.jobs.handler INFO 2024-04-17 16:46:36,169 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.jobs DEBUG 2024-04-17 16:46:36,255 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (211.172 ms) +galaxy.jobs.command_factory INFO 2024-04-17 16:46:36,279 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/tool_script.sh] for tool command [cp '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/configs/tmp4en5ovlk' 'galaxy.json' && gzip -dcf '/scratch/rico/tmp/tmp12w4107b/files/f/9/4/dataset_f942d97c-6c27-4ee4-8ad1-bb1227186612.dat' > '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/outputs/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat'] +galaxy.jobs DEBUG 2024-04-17 16:46:36,431 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Job wrapper for Job [3] prepared (216.640 ms) +galaxy.jobs.command_factory INFO 2024-04-17 16:46:36,453 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/tool_script.sh] for tool command [cp '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/configs/tmpv3xndsel' 'galaxy.json' && gzip -dcf '/scratch/rico/tmp/tmp12w4107b/files/f/e/9/dataset_fe981322-ad11-477a-8c4f-623aad83cb29.dat' > '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/outputs/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat'] +galaxy.jobs.runners DEBUG 2024-04-17 16:46:36,552 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/galaxy_2.ec; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-04-17 16:46:36,575 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] (2) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs.runners DEBUG 2024-04-17 16:46:36,796 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/galaxy_3.ec; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-04-17 16:46:36,817 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (3) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/galaxy_3.sh +uvicorn.access INFO 2024-04-17 16:46:38,847 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55092 - "GET /history/current_history_json?since=2024-04-17T20:46:35.000614 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:38,901 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55092 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-17T20:46:35.712Z HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:38,952 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55092 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:38,992 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55098 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:41,942 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55100 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:44,979 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55108 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:45,828 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:55108 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:48,012 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40404 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:51,045 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40420 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:54,082 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40422 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:55,831 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40422 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:46:57,115 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40422 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-17 16:47:00,147 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40818 - "GET /history/current_history_json?since=2024-04-17T20:46:36.000875 HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 16:47:25,303 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 101735 +galaxy.jobs.runners.local DEBUG 2024-04-17 16:47:25,305 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-04-17 16:47:25,335 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/3/outputs/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat to /scratch/rico/tmp/tmp12w4107b/files/f/1/3/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat +galaxy.tool_util.provided_metadata DEBUG 2024-04-17 16:47:25,367 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] unnamed outputs [{'output1': {'name': 'mm39.fa uncompressed', 'ext': 'fasta'}}] +galaxy.model.metadata DEBUG 2024-04-17 16:47:25,391 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-04-17 16:47:25,458 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 3 executed (133.021 ms) +galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 16:47:30,678 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 101719 +galaxy.jobs.runners.local DEBUG 2024-04-17 16:47:30,679 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-04-17 16:47:30,708 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/2/outputs/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat to /scratch/rico/tmp/tmp12w4107b/files/6/9/9/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat +galaxy.tool_util.provided_metadata DEBUG 2024-04-17 16:47:30,740 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] unnamed outputs [{'output1': {'name': 'hg38.fa uncompressed', 'ext': 'fasta'}}] +galaxy.model.metadata DEBUG 2024-04-17 16:47:30,757 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.jobs.mapper DEBUG 2024-04-17 16:47:30,839 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: planemo_dest +galaxy.jobs DEBUG 2024-04-17 16:47:30,861 [pN:main.1,p:100659,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (162.272 ms) +galaxy.jobs.handler DEBUG 2024-04-17 16:47:30,867 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to planemo_runner runner +galaxy.jobs DEBUG 2024-04-17 16:47:30,893 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: planemo_dest) +galaxy.jobs DEBUG 2024-04-17 16:47:30,901 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-04-17 16:47:30,909 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] Job [4] queued (41.920 ms) +galaxy.jobs.handler INFO 2024-04-17 16:47:30,916 [pN:main.1,p:100659,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-04-17 16:47:31,089 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Job wrapper for Job [4] prepared (147.029 ms) +galaxy.tool_util.deps.conda_util DEBUG 2024-04-17 16:47:39,701 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Executing command: /afs/bx.psu.edu/home/rico/miniconda3/bin/conda list -f --json conda-libmamba-solver > '/scratch/rico/tmp/tmp12w4107b/tmp/tmp840by705' +galaxy.tool_util.deps.conda_util DEBUG 2024-04-17 16:47:40,633 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Executing command: /afs/bx.psu.edu/home/rico/miniconda3/bin/conda create -y --quiet --strict-channel-priority --solver libmamba --override-channels --channel conda-forge --channel bioconda --channel defaults --name mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580 segalign-full=0.1.2.1 bashlex=0.18 +Channels: + - conda-forge + - bioconda + - defaults +Platform: linux-64 +Collecting package metadata (repodata.json): ...working... done +Solving environment: ...working... done + +## Package Plan ## + + environment location: /afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580 + + added / updated specs: + - bashlex=0.18 + - segalign-full=0.1.2.1 + + +The following packages will be downloaded: + + package | build + ---------------------------|----------------- + libsqlite-3.45.3 | h2797004_0 840 KB conda-forge + ------------------------------------------------------------ + Total: 840 KB + +The following NEW packages will be INSTALLED: + + _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge + _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu + bashlex conda-forge/linux-64::bashlex-0.18-py312h7900ff3_1 + bzip2 conda-forge/linux-64::bzip2-1.0.8-hd590300_5 + ca-certificates conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0 + coreutils conda-forge/linux-64::coreutils-9.5-hd590300_0 + cuda-version conda-forge/noarch::cuda-version-11.8-h70ddcb2_3 + cudatoolkit conda-forge/linux-64::cudatoolkit-11.8.0-h4ba93d1_13 + grep conda-forge/linux-64::grep-3.11-he2e7a12_1 + icu conda-forge/linux-64::icu-73.2-h59595ed_0 + lastz bioconda/linux-64::lastz-1.04.22-h031d066_0 + ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0 + libboost conda-forge/linux-64::libboost-1.84.0-h8013b2b_2 + libexpat conda-forge/linux-64::libexpat-2.6.2-h59595ed_0 + libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5 + libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_5 + libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_5 + libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0 + libpng conda-forge/linux-64::libpng-1.6.43-h2797004_0 + libsqlite conda-forge/linux-64::libsqlite-3.45.3-h2797004_0 + libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_5 + libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 + libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 + libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5 + mysql-connector-c conda-forge/linux-64::mysql-connector-c-6.1.11-h659d440_1008 + ncurses conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0 + openssl conda-forge/linux-64::openssl-3.2.1-hd590300_1 + pcre2 conda-forge/linux-64::pcre2-10.43-hcad00b1_0 + pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 + python conda-forge/linux-64::python-3.12.3-hab00c5b_0_cpython + python_abi conda-forge/linux-64::python_abi-3.12-4_cp312 + readline conda-forge/linux-64::readline-8.2-h8228510_1 + sed conda-forge/linux-64::sed-4.8-he412f7d_0 + segalign conda-forge/linux-64::segalign-0.1.2.1-h232f886_0 + segalign-full bioconda/noarch::segalign-full-0.1.2.1-hdfd78af_0 + setuptools conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0 + tbb conda-forge/linux-64::tbb-2020.2-h4bd325d_4 + tbb-devel conda-forge/linux-64::tbb-devel-2020.2-h4bd325d_4 + tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 + tzdata conda-forge/noarch::tzdata-2024a-h0c530f3_0 + ucsc-fatotwobit bioconda/linux-64::ucsc-fatotwobit-455-h2a80c09_1 + wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 + xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 + zstd conda-forge/linux-64::zstd-1.5.5-hfc55251_0 + + +Preparing transaction: ...working... done +Verifying transaction: ...working... done +Executing transaction: ...working... +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 16:50:22,410: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 16:50:22,411: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 16:55:22,512: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 16:55:22,514: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +By downloading and using the CUDA Toolkit conda packages, you accept the terms and conditions of the CUDA End User License Agreement (EULA): https://docs.nvidia.com/cuda/eula/index.html + +done +galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,634 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency segalign-full version 0.1.2.1 of type conda +galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,634 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency bashlex version 0.18 of type conda +galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,636 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency segalign-full version 0.1.2.1 of type conda +galaxy.tool_util.deps DEBUG 2024-04-17 16:56:24,636 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Using dependency bashlex version 0.18 of type conda +galaxy.jobs.command_factory INFO 2024-04-17 16:56:24,663 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] Built script [/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/tool_script.sh] for tool command [[ "$(basename "$CONDA_DEFAULT_ENV")" = "$(basename '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580')" ] || { +MAX_TRIES=3 +COUNT=0 +while [ $COUNT -lt $MAX_TRIES ]; do + . '/afs/bx.psu.edu/home/rico/miniconda3/bin/activate' '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580' > conda_activate.log 2>&1 + if [ $? -eq 0 ];then + break + else + let COUNT=COUNT+1 + if [ $COUNT -eq $MAX_TRIES ];then + echo "Failed to activate conda environment! Error was:" + cat conda_activate.log + exit 1 + fi + sleep 10s + fi +done +} ; [ "$(basename "$CONDA_DEFAULT_ENV")" = "$(basename '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580')" ] || { +MAX_TRIES=3 +COUNT=0 +while [ $COUNT -lt $MAX_TRIES ]; do + . '/afs/bx.psu.edu/home/rico/miniconda3/bin/activate' '/afs/bx.psu.edu/home/rico/miniconda3/envs/mulled-v1-9b38334a1881060a34c5b580c790ccbdb502058fb87e60735496186b52532580' > conda_activate.log 2>&1 + if [ $? -eq 0 ];then + break + else + let COUNT=COUNT+1 + if [ $COUNT -eq $MAX_TRIES ];then + echo "Failed to activate conda environment! Error was:" + cat conda_activate.log + exit 1 + fi + sleep 10s + fi +done +} ; OMP_THREAD_LIMIT=${GALAXY_SLOTS:-2} '/scratch/rico/galaxytools/tools/segalign/run_segalign_diagonal_partition' --tool_directory '/scratch/rico/galaxytools/tools/segalign' --max_segments '20000' '/scratch/rico/tmp/tmp12w4107b/files/6/9/9/dataset_699bbabc-0c77-4e64-be54-3f19bdb266ac.dat' '/scratch/rico/tmp/tmp12w4107b/files/f/1/3/dataset_f1395052-e609-4e2b-870e-754f40477ce9.dat' --strand 'both' --seed '12of19' --step '1' --xdrop '910' --hspthresh '3000' --ydrop '9430' --format 'maf-' --wga_chunk_size '250000' --lastz_interval_size '10000000' --seq_block_size '500000000' --num_gpu '-1' && '/scratch/rico/galaxytools/tools/segalign/package_output.py'] +galaxy.jobs.runners DEBUG 2024-04-17 16:56:24,787 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/working/data_package.tgz" ] ; then cp "/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/working/data_package.tgz" "/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/outputs/dataset_1d496340-1818-4e76-86a7-2b787301634c.dat" ; fi; cd '/scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-04-17 16:56:24,808 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] (4) executing job script: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/galaxy_4.sh + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 17:00:22,614: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:00:22,615: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:05:22,713: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:05:22,715: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:10:22,815: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:10:22,817: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:15:22,913: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:15:22,914: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:20:23,014: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:20:23,016: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:25:23,116: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:25:23,118: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:30:23,218: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:30:23,219: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:35:23,319: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:35:23,320: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-17 17:40:22,201: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:40:22,213: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-17 17:40:22,268: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->a53db5e6-3ad7-463e-9c71-58b0cca1e6f9 +[2024-04-17 17:40:22,269: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-17 17:40:22,275: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->9f43558c-252f-4782-a230-b3676057864b +[2024-04-17 17:40:22,276: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 17:40:22,576: INFO/MainProcess] Task galaxy.prune_history_audit_table[a53db5e6-3ad7-463e-9c71-58b0cca1e6f9] received +[2024-04-17 17:40:22,577: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'd53240c6-f1d5-4de4-8451-f7dbd0211234'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'a53db5e6-3ad7-463e-9c71-58b0cca1e6f9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 17:40:22,599: INFO/MainProcess] Task galaxy.cleanup_short_term_storage[9f43558c-252f-4782-a230-b3676057864b] received +[2024-04-17 17:40:22,599: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '9f43558c-252f-4782-a230-b3676057864b', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '9f43558c-252f-4782-a230-b3676057864b', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '9f43558c-252f-4782-a230-b3676057864b', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '9f43558c-252f-4782-a230-b3676057864b', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '9fa55259-d6e7-4691-ae93-dfedcdf4ca9f'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '9f43558c-252f-4782-a230-b3676057864b', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 17:40:23,768: DEBUG/MainProcess] python path is: /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/local/lib/python38.zip, /usr/local/lib/python3.8, /usr/local/lib/python3.8/lib-dynload, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages +[2024-04-17 17:40:23,769: DEBUG/MainProcess] python path is: /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/local/lib/python38.zip, /usr/local/lib/python3.8, /usr/local/lib/python3.8/lib-dynload, /afs/bx.psu.edu/home/rico/.planemo/gx_venv_3/lib/python3.8/site-packages +[2024-04-17 17:40:23,769: DEBUG/MainProcess] Configuration directory is /scratch/rico/tmp/tmp12w4107b +[2024-04-17 17:40:23,769: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database +[2024-04-17 17:40:23,769: DEBUG/MainProcess] Managed config directory is /scratch/rico/tmp/tmp12w4107b +[2024-04-17 17:40:23,770: DEBUG/MainProcess] Configuration directory is /scratch/rico/tmp/tmp12w4107b +[2024-04-17 17:40:23,770: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database +[2024-04-17 17:40:23,770: DEBUG/MainProcess] Managed config directory is /scratch/rico/tmp/tmp12w4107b +[2024-04-17 17:40:23,970: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +[2024-04-17 17:40:23,975: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +[2024-04-17 17:40:23,978: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json +[2024-04-17 17:40:23,978: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json +[2024-04-17 17:40:23,982: INFO/MainProcess] Install database targeting Galaxy's database configuration. +[2024-04-17 17:40:23,985: INFO/MainProcess] Install database targeting Galaxy's database configuration. +[2024-04-17 17:40:23,986: DEBUG/main] WeblessApplicationStack initialized +[2024-04-17 17:40:23,987: DEBUG/main] WeblessApplicationStack initialized +[2024-04-17 17:40:23,993: DEBUG/main] Loading job configuration from /scratch/rico/tmp/tmp12w4107b/job_conf.xml +[2024-04-17 17:40:23,993: DEBUG/main] Loading job configuration from /scratch/rico/tmp/tmp12w4107b/job_conf.xml +[2024-04-17 17:40:23,994: DEBUG/main] Read job configuration from file: /scratch/rico/tmp/tmp12w4107b/job_conf.xml +[2024-04-17 17:40:23,994: DEBUG/main] Read job configuration from file: /scratch/rico/tmp/tmp12w4107b/job_conf.xml +[2024-04-17 17:40:24,004: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +[2024-04-17 17:40:24,004: INFO/main] Job handler assignment methods set to: db-skip-locked +[2024-04-17 17:40:24,004: DEBUG/main] default set to child with id or tag 'planemo_dest' +[2024-04-17 17:40:24,004: DEBUG/main] Done loading job configuration +[2024-04-17 17:40:24,010: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +[2024-04-17 17:40:24,010: INFO/main] Job handler assignment methods set to: db-skip-locked +[2024-04-17 17:40:24,010: DEBUG/main] default set to child with id or tag 'planemo_dest' +[2024-04-17 17:40:24,010: DEBUG/main] Done loading job configuration +[2024-04-17 17:40:24,144: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +[2024-04-17 17:40:24,147: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +[2024-04-17 17:40:24,362: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +[2024-04-17 17:40:24,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +[2024-04-17 17:40:24,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +[2024-04-17 17:40:24,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +[2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +[2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +[2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +[2024-04-17 17:40:24,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +[2024-04-17 17:40:24,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +[2024-04-17 17:40:24,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +[2024-04-17 17:40:24,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +[2024-04-17 17:40:24,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +[2024-04-17 17:40:24,416: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +[2024-04-17 17:40:24,417: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +[2024-04-17 17:40:24,418: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +[2024-04-17 17:40:24,418: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +[2024-04-17 17:40:24,419: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +[2024-04-17 17:40:24,419: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +[2024-04-17 17:40:24,419: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +[2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +[2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +[2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +[2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +[2024-04-17 17:40:24,420: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +[2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +[2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +[2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +[2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +[2024-04-17 17:40:24,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +[2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +[2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +[2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +[2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +[2024-04-17 17:40:24,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +[2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +[2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +[2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +[2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +[2024-04-17 17:40:24,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +[2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +[2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +[2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +[2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +[2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +[2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +[2024-04-17 17:40:24,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +[2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +[2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +[2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +[2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +[2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +[2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +[2024-04-17 17:40:24,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +[2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +[2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +[2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +[2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +[2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +[2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +[2024-04-17 17:40:24,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +[2024-04-17 17:40:24,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +[2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +[2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +[2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +[2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +[2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +[2024-04-17 17:40:24,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +[2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +[2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +[2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +[2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +[2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +[2024-04-17 17:40:24,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +[2024-04-17 17:40:24,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +[2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +[2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +[2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +[2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +[2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +[2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +[2024-04-17 17:40:24,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +[2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +[2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +[2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +[2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +[2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +[2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +[2024-04-17 17:40:24,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +[2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +[2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +[2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +[2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +[2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +[2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +[2024-04-17 17:40:24,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +[2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +[2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +[2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +[2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +[2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +[2024-04-17 17:40:24,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +[2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +[2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +[2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +[2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +[2024-04-17 17:40:24,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +[2024-04-17 17:40:24,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +[2024-04-17 17:40:24,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +[2024-04-17 17:40:24,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +[2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +[2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +[2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +[2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +[2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +[2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +[2024-04-17 17:40:24,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +[2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +[2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +[2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +[2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +[2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +[2024-04-17 17:40:24,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +[2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +[2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +[2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +[2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +[2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +[2024-04-17 17:40:24,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +[2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +[2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +[2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +[2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +[2024-04-17 17:40:24,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +[2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +[2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +[2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +[2024-04-17 17:40:24,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +[2024-04-17 17:40:24,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +[2024-04-17 17:40:24,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +[2024-04-17 17:40:24,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +[2024-04-17 17:40:24,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +[2024-04-17 17:40:24,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +[2024-04-17 17:40:24,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +[2024-04-17 17:40:24,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +[2024-04-17 17:40:24,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +[2024-04-17 17:40:24,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +[2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +[2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +[2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +[2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +[2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +[2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +[2024-04-17 17:40:24,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +[2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +[2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +[2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +[2024-04-17 17:40:24,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +[2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +[2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +[2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +[2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +[2024-04-17 17:40:24,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +[2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +[2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +[2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +[2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +[2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +[2024-04-17 17:40:24,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +[2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +[2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +[2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +[2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +[2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +[2024-04-17 17:40:24,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +[2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +[2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +[2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +[2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +[2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +[2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +[2024-04-17 17:40:24,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +[2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +[2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +[2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +[2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +[2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +[2024-04-17 17:40:24,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +[2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +[2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +[2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +[2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +[2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +[2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +[2024-04-17 17:40:24,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +[2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +[2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +[2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +[2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +[2024-04-17 17:40:24,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +[2024-04-17 17:40:25,333: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +[2024-04-17 17:40:25,333: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +[2024-04-17 17:40:25,333: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +[2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +[2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +[2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +[2024-04-17 17:40:25,334: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +[2024-04-17 17:40:25,335: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +[2024-04-17 17:40:25,335: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +[2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +[2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +[2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +[2024-04-17 17:40:25,336: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +[2024-04-17 17:40:25,337: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +[2024-04-17 17:40:25,337: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +[2024-04-17 17:40:25,337: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +[2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +[2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +[2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +[2024-04-17 17:40:25,338: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +[2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +[2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +[2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +[2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +[2024-04-17 17:40:25,339: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +[2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +[2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +[2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +[2024-04-17 17:40:25,340: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +[2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +[2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +[2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +[2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +[2024-04-17 17:40:25,341: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +[2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +[2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +[2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +[2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +[2024-04-17 17:40:25,342: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +[2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +[2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +[2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +[2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +[2024-04-17 17:40:25,343: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +[2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +[2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +[2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +[2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +[2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +[2024-04-17 17:40:25,344: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +[2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +[2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +[2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +[2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +[2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +[2024-04-17 17:40:25,345: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +[2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +[2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +[2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +[2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +[2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +[2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +[2024-04-17 17:40:25,346: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +[2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +[2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +[2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +[2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +[2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +[2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +[2024-04-17 17:40:25,347: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +[2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +[2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +[2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +[2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +[2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +[2024-04-17 17:40:25,348: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +[2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +[2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +[2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +[2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +[2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +[2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +[2024-04-17 17:40:25,350: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +[2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +[2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +[2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +[2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +[2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +[2024-04-17 17:40:25,351: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +[2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +[2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +[2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +[2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +[2024-04-17 17:40:25,352: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +[2024-04-17 17:40:25,355: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +[2024-04-17 17:40:25,355: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +[2024-04-17 17:40:25,355: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +[2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +[2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +[2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +[2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +[2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +[2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +[2024-04-17 17:40:25,356: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +[2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +[2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +[2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +[2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +[2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +[2024-04-17 17:40:25,357: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +[2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +[2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +[2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +[2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +[2024-04-17 17:40:25,358: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +[2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +[2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +[2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +[2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +[2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +[2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +[2024-04-17 17:40:25,359: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +[2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +[2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +[2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +[2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +[2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +[2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +[2024-04-17 17:40:25,360: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +[2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +[2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +[2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +[2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +[2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +[2024-04-17 17:40:25,361: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +[2024-04-17 17:40:25,362: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +[2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +[2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +[2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +[2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +[2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +[2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +[2024-04-17 17:40:25,363: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +[2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +[2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +[2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +[2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +[2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +[2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +[2024-04-17 17:40:25,364: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +[2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +[2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +[2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +[2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +[2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +[2024-04-17 17:40:25,365: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +[2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +[2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +[2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +[2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +[2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +[2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +[2024-04-17 17:40:25,366: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +[2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +[2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +[2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +[2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +[2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +[2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +[2024-04-17 17:40:25,367: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +[2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +[2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +[2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +[2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +[2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +[2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +[2024-04-17 17:40:25,368: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +[2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +[2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +[2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +[2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +[2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +[2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +[2024-04-17 17:40:25,369: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +[2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +[2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +[2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +[2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +[2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +[2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +[2024-04-17 17:40:25,370: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +[2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +[2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +[2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +[2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +[2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +[2024-04-17 17:40:25,371: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +[2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +[2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +[2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +[2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +[2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +[2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +[2024-04-17 17:40:25,372: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +[2024-04-17 17:40:25,373: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +[2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +[2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +[2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +[2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +[2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +[2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +[2024-04-17 17:40:25,374: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +[2024-04-17 17:40:25,375: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +[2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +[2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +[2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +[2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +[2024-04-17 17:40:25,376: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +[2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +[2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +[2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +[2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +[2024-04-17 17:40:25,377: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +[2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +[2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +[2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +[2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +[2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +[2024-04-17 17:40:25,378: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +[2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +[2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +[2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +[2024-04-17 17:40:25,379: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +[2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +[2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +[2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +[2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +[2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +[2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +[2024-04-17 17:40:25,380: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +[2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +[2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +[2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +[2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +[2024-04-17 17:40:25,381: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +[2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +[2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +[2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +[2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +[2024-04-17 17:40:25,382: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +[2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +[2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +[2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +[2024-04-17 17:40:25,383: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +[2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +[2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +[2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +[2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +[2024-04-17 17:40:25,384: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +[2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +[2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +[2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +[2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +[2024-04-17 17:40:25,385: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +[2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +[2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +[2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +[2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +[2024-04-17 17:40:25,386: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +[2024-04-17 17:40:25,387: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +[2024-04-17 17:40:25,387: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +[2024-04-17 17:40:25,387: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +[2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +[2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +[2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +[2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +[2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +[2024-04-17 17:40:25,388: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +[2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +[2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +[2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +[2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +[2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +[2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +[2024-04-17 17:40:25,389: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +[2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +[2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +[2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +[2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +[2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +[2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +[2024-04-17 17:40:25,390: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +[2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +[2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +[2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +[2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +[2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +[2024-04-17 17:40:25,391: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +[2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +[2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +[2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +[2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +[2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +[2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +[2024-04-17 17:40:25,392: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +[2024-04-17 17:40:25,393: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +[2024-04-17 17:40:25,394: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +[2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +[2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +[2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +[2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +[2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +[2024-04-17 17:40:25,395: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +[2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +[2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +[2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +[2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +[2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +[2024-04-17 17:40:25,396: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +[2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +[2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +[2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +[2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +[2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +[2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +[2024-04-17 17:40:25,397: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +[2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +[2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +[2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +[2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +[2024-04-17 17:40:25,398: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +[2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +[2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +[2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +[2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +[2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +[2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +[2024-04-17 17:40:25,399: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +[2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +[2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +[2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +[2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +[2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +[2024-04-17 17:40:25,400: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +[2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +[2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +[2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +[2024-04-17 17:40:25,401: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +[2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +[2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +[2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +[2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +[2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +[2024-04-17 17:40:25,402: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +[2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +[2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +[2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +[2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +[2024-04-17 17:40:25,403: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +[2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +[2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +[2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +[2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +[2024-04-17 17:40:25,404: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +[2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +[2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +[2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +[2024-04-17 17:40:25,405: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +[2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +[2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +[2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +[2024-04-17 17:40:25,406: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +[2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +[2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +[2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +[2024-04-17 17:40:25,407: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +[2024-04-17 17:40:25,408: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +[2024-04-17 17:40:25,408: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +[2024-04-17 17:40:25,409: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +[2024-04-17 17:40:25,409: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +[2024-04-17 17:40:25,409: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +[2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +[2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +[2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +[2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +[2024-04-17 17:40:25,410: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +[2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +[2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +[2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +[2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +[2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +[2024-04-17 17:40:25,411: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +[2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +[2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +[2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +[2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +[2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +[2024-04-17 17:40:25,412: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +[2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +[2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +[2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +[2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +[2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +[2024-04-17 17:40:25,413: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +[2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +[2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +[2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +[2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +[2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +[2024-04-17 17:40:25,414: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +[2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +[2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +[2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +[2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +[2024-04-17 17:40:25,415: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +[2024-04-17 17:40:25,418: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +[2024-04-17 17:40:25,418: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +[2024-04-17 17:40:25,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +[2024-04-17 17:40:25,421: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +[2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +[2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +[2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +[2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +[2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +[2024-04-17 17:40:25,422: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +[2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +[2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +[2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +[2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +[2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +[2024-04-17 17:40:25,423: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +[2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +[2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +[2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +[2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +[2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +[2024-04-17 17:40:25,424: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +[2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +[2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +[2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +[2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +[2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +[2024-04-17 17:40:25,425: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +[2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +[2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +[2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +[2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +[2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +[2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +[2024-04-17 17:40:25,426: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +[2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +[2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +[2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +[2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +[2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +[2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +[2024-04-17 17:40:25,427: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +[2024-04-17 17:40:25,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +[2024-04-17 17:40:25,428: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +[2024-04-17 17:40:25,429: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +[2024-04-17 17:40:25,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +[2024-04-17 17:40:25,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +[2024-04-17 17:40:25,430: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +[2024-04-17 17:40:25,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +[2024-04-17 17:40:25,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +[2024-04-17 17:40:25,431: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +[2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +[2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +[2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +[2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +[2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +[2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +[2024-04-17 17:40:25,432: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +[2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +[2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +[2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +[2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +[2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +[2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +[2024-04-17 17:40:25,433: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +[2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +[2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +[2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +[2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +[2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +[2024-04-17 17:40:25,434: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +[2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +[2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +[2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +[2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +[2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +[2024-04-17 17:40:25,435: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +[2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +[2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +[2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +[2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +[2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +[2024-04-17 17:40:25,436: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +[2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +[2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +[2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +[2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +[2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +[2024-04-17 17:40:25,437: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +[2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +[2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +[2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +[2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +[2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +[2024-04-17 17:40:25,438: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +[2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +[2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +[2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +[2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +[2024-04-17 17:40:25,439: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +[2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +[2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +[2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +[2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +[2024-04-17 17:40:25,440: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +[2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +[2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +[2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +[2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +[2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +[2024-04-17 17:40:25,441: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +[2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +[2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +[2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +[2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +[2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +[2024-04-17 17:40:25,442: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +[2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +[2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +[2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +[2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +[2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +[2024-04-17 17:40:25,443: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +[2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +[2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +[2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +[2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +[2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +[2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +[2024-04-17 17:40:25,444: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +[2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +[2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +[2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +[2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +[2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +[2024-04-17 17:40:25,445: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +[2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +[2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +[2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +[2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +[2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +[2024-04-17 17:40:25,446: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +[2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +[2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +[2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +[2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +[2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +[2024-04-17 17:40:25,447: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +[2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +[2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +[2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +[2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +[2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +[2024-04-17 17:40:25,448: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +[2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +[2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +[2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +[2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +[2024-04-17 17:40:25,449: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +[2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +[2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +[2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +[2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +[2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +[2024-04-17 17:40:25,450: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +[2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +[2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +[2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +[2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +[2024-04-17 17:40:25,451: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +[2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +[2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +[2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +[2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +[2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +[2024-04-17 17:40:25,452: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +[2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +[2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +[2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +[2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +[2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +[2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +[2024-04-17 17:40:25,453: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +[2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +[2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +[2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +[2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +[2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +[2024-04-17 17:40:25,454: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +[2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +[2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +[2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +[2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +[2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +[2024-04-17 17:40:25,455: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +[2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +[2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +[2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +[2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +[2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +[2024-04-17 17:40:25,456: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +[2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +[2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +[2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +[2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +[2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +[2024-04-17 17:40:25,457: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +[2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +[2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +[2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +[2024-04-17 17:40:25,458: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +[2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +[2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +[2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +[2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +[2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +[2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +[2024-04-17 17:40:25,459: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +[2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +[2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +[2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +[2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +[2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +[2024-04-17 17:40:25,460: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +[2024-04-17 17:40:25,461: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +[2024-04-17 17:40:25,461: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +[2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +[2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +[2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +[2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +[2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +[2024-04-17 17:40:25,462: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +[2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +[2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +[2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +[2024-04-17 17:40:25,463: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +[2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +[2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +[2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +[2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +[2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +[2024-04-17 17:40:25,465: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +[2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +[2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +[2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +[2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +[2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +[2024-04-17 17:40:25,466: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +[2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +[2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +[2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +[2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +[2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +[2024-04-17 17:40:25,467: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +[2024-04-17 17:40:25,468: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +[2024-04-17 17:40:25,468: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +[2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +[2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +[2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +[2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +[2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +[2024-04-17 17:40:25,469: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +[2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +[2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +[2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +[2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +[2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +[2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +[2024-04-17 17:40:25,470: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +[2024-04-17 17:40:25,471: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +[2024-04-17 17:40:25,471: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +[2024-04-17 17:40:25,471: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +[2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +[2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +[2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +[2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +[2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +[2024-04-17 17:40:25,472: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +[2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +[2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +[2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +[2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +[2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +[2024-04-17 17:40:25,473: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +[2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +[2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +[2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +[2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +[2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +[2024-04-17 17:40:25,474: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +[2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +[2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +[2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +[2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +[2024-04-17 17:40:25,475: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +[2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +[2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +[2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +[2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +[2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +[2024-04-17 17:40:25,476: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +[2024-04-17 17:40:25,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +[2024-04-17 17:40:25,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +[2024-04-17 17:40:25,477: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +[2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +[2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +[2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +[2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +[2024-04-17 17:40:25,478: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +[2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +[2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +[2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +[2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +[2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +[2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +[2024-04-17 17:40:25,479: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +[2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +[2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +[2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +[2024-04-17 17:40:25,480: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +[2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +[2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +[2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +[2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +[2024-04-17 17:40:25,482: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +[2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +[2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +[2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +[2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +[2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +[2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +[2024-04-17 17:40:25,483: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +[2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +[2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +[2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +[2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +[2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +[2024-04-17 17:40:25,484: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +[2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +[2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +[2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +[2024-04-17 17:40:25,488: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +[2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +[2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +[2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +[2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +[2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +[2024-04-17 17:40:25,489: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +[2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +[2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +[2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +[2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +[2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +[2024-04-17 17:40:25,490: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +[2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +[2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +[2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +[2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +[2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +[2024-04-17 17:40:25,491: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +[2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +[2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +[2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +[2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +[2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +[2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +[2024-04-17 17:40:25,492: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +[2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +[2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +[2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +[2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +[2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +[2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +[2024-04-17 17:40:25,493: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +[2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +[2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +[2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +[2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +[2024-04-17 17:40:25,494: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +[2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +[2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +[2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +[2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +[2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +[2024-04-17 17:40:25,495: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +[2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +[2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +[2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +[2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +[2024-04-17 17:40:25,496: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +[2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +[2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +[2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +[2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +[2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +[2024-04-17 17:40:25,497: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +[2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +[2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +[2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +[2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +[2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +[2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +[2024-04-17 17:40:25,498: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +[2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +[2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +[2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +[2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +[2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +[2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +[2024-04-17 17:40:25,499: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +[2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +[2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +[2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +[2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +[2024-04-17 17:40:25,500: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +[2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +[2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +[2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +[2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +[2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +[2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +[2024-04-17 17:40:25,501: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +[2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +[2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +[2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +[2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +[2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +[2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +[2024-04-17 17:40:25,502: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +[2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +[2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +[2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +[2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +[2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +[2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +[2024-04-17 17:40:25,503: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +[2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +[2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +[2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +[2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +[2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +[2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +[2024-04-17 17:40:25,504: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +[2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +[2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +[2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +[2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +[2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +[2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +[2024-04-17 17:40:25,505: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +[2024-04-17 17:40:25,506: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +[2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +[2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +[2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +[2024-04-17 17:40:25,507: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +[2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +[2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +[2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +[2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +[2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +[2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +[2024-04-17 17:40:25,508: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +[2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +[2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +[2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +[2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +[2024-04-17 17:40:25,509: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +[2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +[2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +[2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +[2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +[2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +[2024-04-17 17:40:25,510: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +[2024-04-17 17:40:25,511: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +[2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +[2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +[2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +[2024-04-17 17:40:25,512: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +[2024-04-17 17:40:25,513: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +[2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +[2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +[2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +[2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +[2024-04-17 17:40:25,514: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +[2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +[2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +[2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +[2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +[2024-04-17 17:40:25,515: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +[2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +[2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +[2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +[2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +[2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +[2024-04-17 17:40:25,516: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +[2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +[2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +[2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +[2024-04-17 17:40:25,517: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +[2024-04-17 17:40:25,518: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +[2024-04-17 17:40:25,518: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +[2024-04-17 17:40:25,519: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +[2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +[2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +[2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +[2024-04-17 17:40:25,520: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +[2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +[2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +[2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +[2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +[2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +[2024-04-17 17:40:25,521: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +[2024-04-17 17:40:25,522: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +[2024-04-17 17:40:25,523: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +[2024-04-17 17:40:25,523: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +[2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +[2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +[2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +[2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +[2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +[2024-04-17 17:40:25,524: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +[2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +[2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +[2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +[2024-04-17 17:40:25,525: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +[2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +[2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +[2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +[2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +[2024-04-17 17:40:25,526: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +[2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +[2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +[2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +[2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +[2024-04-17 17:40:25,527: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +[2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +[2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +[2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +[2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +[2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +[2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +[2024-04-17 17:40:25,531: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +[2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +[2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +[2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +[2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +[2024-04-17 17:40:25,532: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +[2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +[2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +[2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +[2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +[2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +[2024-04-17 17:40:25,533: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +[2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +[2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +[2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +[2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +[2024-04-17 17:40:25,534: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +[2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +[2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +[2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +[2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +[2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +[2024-04-17 17:40:25,535: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +[2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +[2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +[2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +[2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +[2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +[2024-04-17 17:40:25,536: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +[2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +[2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +[2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +[2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +[2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +[2024-04-17 17:40:25,537: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +[2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +[2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +[2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +[2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +[2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +[2024-04-17 17:40:25,538: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +[2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +[2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +[2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +[2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +[2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +[2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +[2024-04-17 17:40:25,539: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +[2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +[2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +[2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +[2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +[2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +[2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +[2024-04-17 17:40:25,540: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +[2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +[2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +[2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +[2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +[2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +[2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +[2024-04-17 17:40:25,541: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +[2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +[2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +[2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +[2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +[2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +[2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +[2024-04-17 17:40:25,542: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +[2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +[2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +[2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +[2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +[2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +[2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +[2024-04-17 17:40:25,543: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +[2024-04-17 17:40:25,544: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +[2024-04-17 17:40:25,544: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +[2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +[2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +[2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +[2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +[2024-04-17 17:40:25,545: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +[2024-04-17 17:40:25,546: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +[2024-04-17 17:40:25,547: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +[2024-04-17 17:40:25,548: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +[2024-04-17 17:40:25,549: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +[2024-04-17 17:40:25,550: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +[2024-04-17 17:40:25,551: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +[2024-04-17 17:40:25,552: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +[2024-04-17 17:40:25,553: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +[2024-04-17 17:40:25,554: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +[2024-04-17 17:40:25,555: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +[2024-04-17 17:40:25,556: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +[2024-04-17 17:40:25,557: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +[2024-04-17 17:40:25,558: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +[2024-04-17 17:40:25,559: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +[2024-04-17 17:40:25,560: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +[2024-04-17 17:40:25,561: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +[2024-04-17 17:40:25,562: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +[2024-04-17 17:40:25,563: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +[2024-04-17 17:40:25,564: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +[2024-04-17 17:40:25,565: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +[2024-04-17 17:40:25,566: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +[2024-04-17 17:40:25,567: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +[2024-04-17 17:40:25,568: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +[2024-04-17 17:40:25,569: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +[2024-04-17 17:40:25,570: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +[2024-04-17 17:40:25,571: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +[2024-04-17 17:40:25,572: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +[2024-04-17 17:40:25,573: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +[2024-04-17 17:40:25,574: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +[2024-04-17 17:40:25,575: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +[2024-04-17 17:40:25,576: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +[2024-04-17 17:40:25,577: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +[2024-04-17 17:40:25,578: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +[2024-04-17 17:40:25,579: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +[2024-04-17 17:40:25,580: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +[2024-04-17 17:40:25,581: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +[2024-04-17 17:40:25,582: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +[2024-04-17 17:40:25,583: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +[2024-04-17 17:40:25,584: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +[2024-04-17 17:40:25,585: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +[2024-04-17 17:40:25,586: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +[2024-04-17 17:40:25,587: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +[2024-04-17 17:40:25,588: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +[2024-04-17 17:40:25,589: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +[2024-04-17 17:40:25,590: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +[2024-04-17 17:40:25,591: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +[2024-04-17 17:40:25,592: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +[2024-04-17 17:40:25,593: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +[2024-04-17 17:40:25,594: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +[2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +[2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +[2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +[2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +[2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +[2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +[2024-04-17 17:40:25,595: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +[2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +[2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +[2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +[2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +[2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +[2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +[2024-04-17 17:40:25,596: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +[2024-04-17 17:40:25,597: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +[2024-04-17 17:40:25,597: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +[2024-04-17 17:40:25,598: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +[2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +[2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +[2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +[2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +[2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +[2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +[2024-04-17 17:40:25,599: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +[2024-04-17 17:40:25,600: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +[2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +[2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +[2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +[2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +[2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +[2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +[2024-04-17 17:40:25,601: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +[2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +[2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +[2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +[2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +[2024-04-17 17:40:25,602: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +[2024-04-17 17:40:25,615: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +[2024-04-17 17:40:25,615: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +[2024-04-17 17:40:25,615: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +[2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +[2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +[2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +[2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +[2024-04-17 17:40:25,616: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +[2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +[2024-04-17 17:40:25,616: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +[2024-04-17 17:40:25,616: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +[2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +[2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +[2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +[2024-04-17 17:40:25,617: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +[2024-04-17 17:40:25,617: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +[2024-04-17 17:40:25,618: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +[2024-04-17 17:40:25,618: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +[2024-04-17 17:40:25,618: DEBUG/main] Loading references to tool sheds from /scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml +[2024-04-17 17:40:25,618: DEBUG/main] Loaded reference to tool shed: Target Shed +[2024-04-17 17:40:25,620: DEBUG/main] Loading references to tool sheds from /scratch/rico/tmp/tmp12w4107b/tool_sheds_conf.xml +[2024-04-17 17:40:25,626: DEBUG/main] Loaded reference to tool shed: Target Shed +[2024-04-17 17:40:25,637: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (5.570 ms) +[2024-04-17 17:40:26,260: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (641.245 ms) +[2024-04-17 17:40:27,787: INFO/main] Task galaxy.prune_history_audit_table[a53db5e6-3ad7-463e-9c71-58b0cca1e6f9] succeeded in 5.20867227204144s: None +[2024-04-17 17:40:27,788: INFO/main] Task galaxy.cleanup_short_term_storage[9f43558c-252f-4782-a230-b3676057864b] succeeded in 5.188165600411594s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-17 17:40:45,655 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (16.622 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 17:45:22,376: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:45:22,377: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:50:22,477: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:50:22,478: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 17:55:22,578: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 17:55:22,579: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:00:22,679: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:00:22,680: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:05:22,777: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:05:22,779: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:10:22,879: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:10:22,880: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:15:22,981: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:15:22,982: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:20:23,081: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:20:23,082: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:25:23,182: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:25:23,183: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.jobs.runners.util.process_groups DEBUG 2024-04-17 18:26:42,103 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 102620 +galaxy.jobs.runners.local DEBUG 2024-04-17 18:26:42,105 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] execution finished: /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-04-17 18:26:42,137 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] finish(): Moved /scratch/rico/tmp/tmp12w4107b/job_working_directory/000/4/outputs/dataset_1d496340-1818-4e76-86a7-2b787301634c.dat to /scratch/rico/tmp/tmp12w4107b/files/1/d/4/dataset_1d496340-1818-4e76-86a7-2b787301634c.dat +galaxy.model.metadata DEBUG 2024-04-17 18:26:42,183 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.jobs DEBUG 2024-04-17 18:26:42,246 [pN:main.1,p:100659,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 4 executed (119.368 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 18:30:23,284: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:30:23,285: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:35:23,385: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:35:23,386: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-17 18:40:22,289: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:40:22,291: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-17 18:40:22,305: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->23d46db2-021b-4a9a-bfe7-e19b74c40727 +[2024-04-17 18:40:22,305: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-17 18:40:22,313: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7 +[2024-04-17 18:40:22,313: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 18:40:22,884: INFO/main] Task galaxy.prune_history_audit_table[23d46db2-021b-4a9a-bfe7-e19b74c40727] received +[2024-04-17 18:40:22,885: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '23d46db2-021b-4a9a-bfe7-e19b74c40727', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '6fc8f858-fc5f-4147-89d3-311c0d4146f4'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '23d46db2-021b-4a9a-bfe7-e19b74c40727', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 18:40:22,908: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (21.650 ms) +[2024-04-17 18:40:22,908: INFO/main] Task galaxy.prune_history_audit_table[23d46db2-021b-4a9a-bfe7-e19b74c40727] succeeded in 0.02240056823939085s: None +[2024-04-17 18:40:22,924: INFO/main] Task galaxy.cleanup_short_term_storage[ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7] received +[2024-04-17 18:40:22,924: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '1801faf9-795d-4ceb-8695-daaae074cd23'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 18:40:22,926: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (1.141 ms) +[2024-04-17 18:40:22,926: INFO/main] Task galaxy.cleanup_short_term_storage[ffc0fd3c-94f3-4e53-b2e5-a759afa6c3c7] succeeded in 0.0015790751203894615s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-17 18:40:45,672 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (16.467 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 18:45:22,413: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:45:22,415: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:50:22,513: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:50:22,515: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 18:55:22,615: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 18:55:22,616: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:00:22,716: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:00:22,718: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:05:22,818: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:05:22,820: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:10:22,920: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:10:22,921: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:15:23,022: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:15:23,023: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:20:23,123: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:20:23,125: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:25:23,225: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:25:23,227: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:30:23,327: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:30:23,328: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:35:23,428: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:35:23,430: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-17 19:40:22,381: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:40:22,383: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-17 19:40:22,397: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->db7a2df4-7068-4bdd-a894-61ccf279a411 +[2024-04-17 19:40:22,397: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-17 19:40:22,402: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->ca4a4fda-8edb-4c76-8a80-4522e0504d18 +[2024-04-17 19:40:22,403: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 19:40:22,481: INFO/main] Task galaxy.prune_history_audit_table[db7a2df4-7068-4bdd-a894-61ccf279a411] received +[2024-04-17 19:40:22,482: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'db7a2df4-7068-4bdd-a894-61ccf279a411', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '7ad4db53-22ef-478f-ac95-d3096db9ca8c'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'db7a2df4-7068-4bdd-a894-61ccf279a411', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 19:40:22,507: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (23.302 ms) +[2024-04-17 19:40:22,508: INFO/main] Task galaxy.prune_history_audit_table[db7a2df4-7068-4bdd-a894-61ccf279a411] succeeded in 0.024009098298847675s: None +[2024-04-17 19:40:22,520: INFO/main] Task galaxy.cleanup_short_term_storage[ca4a4fda-8edb-4c76-8a80-4522e0504d18] received +[2024-04-17 19:40:22,520: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'ca87b97f-e4cf-4a0d-a3a8-1bf2668effc6'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ca4a4fda-8edb-4c76-8a80-4522e0504d18', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 19:40:22,521: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.610 ms) +[2024-04-17 19:40:22,522: INFO/main] Task galaxy.cleanup_short_term_storage[ca4a4fda-8edb-4c76-8a80-4522e0504d18] succeeded in 0.0010134056210517883s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-17 19:40:45,686 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.946 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 19:45:22,503: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:45:22,505: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:50:22,508: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:50:22,510: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 19:55:22,610: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 19:55:22,611: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:00:22,669: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:00:22,670: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:05:22,771: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:05:22,773: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:10:22,873: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:10:22,874: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:15:22,974: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:15:22,976: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:20:22,996: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:20:22,998: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:25:23,059: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:25:23,060: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:30:23,068: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:30:23,070: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:35:23,170: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:35:23,172: DEBUG/MainProcess] beat: Waking up in 4.99 minutes. +[2024-04-17 20:40:22,473: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:40:22,475: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-17 20:40:22,490: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->e8ddf705-776f-4c84-b80e-bb18f38cad75 +[2024-04-17 20:40:22,490: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-17 20:40:22,498: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->1aefecb8-332b-40d6-b213-aa1c690d56a8 +[2024-04-17 20:40:22,498: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 20:40:23,028: INFO/main] Task galaxy.prune_history_audit_table[e8ddf705-776f-4c84-b80e-bb18f38cad75] received +[2024-04-17 20:40:23,029: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'e8ddf705-776f-4c84-b80e-bb18f38cad75', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '1d81c90e-96c6-4243-abb7-946fdb2e2571'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'e8ddf705-776f-4c84-b80e-bb18f38cad75', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 20:40:23,049: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (18.926 ms) +[2024-04-17 20:40:23,050: INFO/main] Task galaxy.prune_history_audit_table[e8ddf705-776f-4c84-b80e-bb18f38cad75] succeeded in 0.01952252257615328s: None +[2024-04-17 20:40:23,065: INFO/main] Task galaxy.cleanup_short_term_storage[1aefecb8-332b-40d6-b213-aa1c690d56a8] received +[2024-04-17 20:40:23,065: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '1aefecb8-332b-40d6-b213-aa1c690d56a8', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '32f5a1d2-1ae8-4494-a803-3ac7fddeba4b'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '1aefecb8-332b-40d6-b213-aa1c690d56a8', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 20:40:23,067: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.666 ms) +[2024-04-17 20:40:23,067: INFO/main] Task galaxy.cleanup_short_term_storage[1aefecb8-332b-40d6-b213-aa1c690d56a8] succeeded in 0.0010927561670541763s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-17 20:40:45,699 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.266 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 20:45:22,501: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:45:22,503: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:50:22,509: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:50:22,510: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 20:55:22,611: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 20:55:22,612: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:00:22,620: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:00:22,622: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:05:22,722: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:05:22,724: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:10:22,824: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:10:22,826: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:15:22,926: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:15:22,928: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:20:23,028: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:20:23,030: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:25:23,130: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:25:23,132: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:30:23,232: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:30:23,234: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:35:23,334: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:35:23,335: DEBUG/MainProcess] beat: Waking up in 4.99 minutes. +[2024-04-17 21:40:22,565: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:40:22,567: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-17 21:40:22,591: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->7f7da24d-3a93-4bc9-9348-9da8dc7f88d6 +[2024-04-17 21:40:22,592: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-17 21:40:22,603: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->8bacded8-77ed-42b3-a237-a36afe528a0f +[2024-04-17 21:40:22,604: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 21:40:22,990: INFO/main] Task galaxy.prune_history_audit_table[7f7da24d-3a93-4bc9-9348-9da8dc7f88d6] received +[2024-04-17 21:40:22,991: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3b3a686e-0ea6-4d27-9647-7f951444b466'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '7f7da24d-3a93-4bc9-9348-9da8dc7f88d6', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 21:40:23,025: INFO/main] Task galaxy.cleanup_short_term_storage[8bacded8-77ed-42b3-a237-a36afe528a0f] received +[2024-04-17 21:40:23,026: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '8bacded8-77ed-42b3-a237-a36afe528a0f', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '367f05e1-381e-43f4-a1d3-80e9f4a7b869'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '8bacded8-77ed-42b3-a237-a36afe528a0f', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 21:40:23,027: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.575 ms) +[2024-04-17 21:40:23,028: INFO/main] Task galaxy.cleanup_short_term_storage[8bacded8-77ed-42b3-a237-a36afe528a0f] succeeded in 0.0011010067537426949s: None +[2024-04-17 21:40:23,031: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (38.911 ms) +[2024-04-17 21:40:23,031: INFO/main] Task galaxy.prune_history_audit_table[7f7da24d-3a93-4bc9-9348-9da8dc7f88d6] succeeded in 0.0397188663482666s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-17 21:40:45,719 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (19.607 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 21:45:22,704: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:45:22,705: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:50:22,805: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:50:22,806: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 21:55:22,907: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 21:55:22,908: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:00:23,009: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:00:23,010: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:05:23,111: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:05:23,113: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:10:23,213: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:10:23,214: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:15:23,315: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:15:23,316: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:20:23,416: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:20:23,418: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:25:23,519: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:25:23,520: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:30:23,620: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:30:23,622: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:35:23,723: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:35:23,724: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-17 22:40:22,657: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:40:22,659: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-17 22:40:22,675: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->ad2db487-0ea1-43f4-84fa-7442fd8a5e12 +[2024-04-17 22:40:22,675: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-17 22:40:22,683: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->03da7b60-f8e9-454d-a50d-05a6da16fa64 +[2024-04-17 22:40:22,684: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 22:40:23,291: INFO/main] Task galaxy.prune_history_audit_table[ad2db487-0ea1-43f4-84fa-7442fd8a5e12] received +[2024-04-17 22:40:23,295: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'ad285130-05f8-4cc7-903c-e6e90ecc1fb8'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ad2db487-0ea1-43f4-84fa-7442fd8a5e12', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 22:40:23,322: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (25.857 ms) +[2024-04-17 22:40:23,323: INFO/main] Task galaxy.prune_history_audit_table[ad2db487-0ea1-43f4-84fa-7442fd8a5e12] succeeded in 0.02652161754667759s: None +[2024-04-17 22:40:23,330: INFO/main] Task galaxy.cleanup_short_term_storage[03da7b60-f8e9-454d-a50d-05a6da16fa64] received +[2024-04-17 22:40:23,330: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '03da7b60-f8e9-454d-a50d-05a6da16fa64', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '2014ace3-bd75-456c-bc81-308cb28ed3c3'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '03da7b60-f8e9-454d-a50d-05a6da16fa64', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 22:40:23,332: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.579 ms) +[2024-04-17 22:40:23,332: INFO/main] Task galaxy.cleanup_short_term_storage[03da7b60-f8e9-454d-a50d-05a6da16fa64] succeeded in 0.0010370416566729546s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-17 22:40:45,733 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (14.014 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 22:45:22,784: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:45:22,786: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:50:22,886: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:50:22,888: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 22:55:22,985: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 22:55:22,987: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:00:23,088: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:00:23,090: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:05:23,190: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:05:23,191: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:10:23,291: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:10:23,293: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:15:23,394: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:15:23,395: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:20:23,495: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:20:23,497: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:25:23,597: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:25:23,599: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:30:23,700: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:30:23,701: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:35:23,801: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:35:23,803: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-17 23:40:22,750: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:40:22,752: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-17 23:40:22,767: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->7c97376c-f7d0-486e-98b2-bf5ca47fe0a5 +[2024-04-17 23:40:22,767: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-17 23:40:22,776: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->a9bc1f52-3052-47bb-bf10-486991139423 +[2024-04-17 23:40:22,776: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-17 23:40:23,257: INFO/main] Task galaxy.prune_history_audit_table[7c97376c-f7d0-486e-98b2-bf5ca47fe0a5] received +[2024-04-17 23:40:23,257: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '4af19dee-e25a-49b9-b1a2-6605d3451c15'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '7c97376c-f7d0-486e-98b2-bf5ca47fe0a5', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 23:40:23,285: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (26.131 ms) +[2024-04-17 23:40:23,286: INFO/main] Task galaxy.prune_history_audit_table[7c97376c-f7d0-486e-98b2-bf5ca47fe0a5] succeeded in 0.02692567929625511s: None +[2024-04-17 23:40:23,298: INFO/main] Task galaxy.cleanup_short_term_storage[a9bc1f52-3052-47bb-bf10-486991139423] received +[2024-04-17 23:40:23,298: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'a9bc1f52-3052-47bb-bf10-486991139423', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'f7771e7e-90db-4cdc-8cd9-18e70a3fa746'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'a9bc1f52-3052-47bb-bf10-486991139423', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-17 23:40:23,300: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.567 ms) +[2024-04-17 23:40:23,300: INFO/main] Task galaxy.cleanup_short_term_storage[a9bc1f52-3052-47bb-bf10-486991139423] succeeded in 0.0010050693526864052s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-17 23:40:45,747 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.534 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-17 23:45:22,877: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:45:22,878: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:50:22,978: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:50:22,980: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-17 23:55:23,081: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-17 23:55:23,082: DEBUG/MainProcess] beat: Waking up in 4.62 minutes. +[2024-04-18 00:00:00,090: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:00:00,091: INFO/MainProcess] Scheduler: Sending due task celery.backend_cleanup (celery.backend_cleanup) +[2024-04-18 00:00:00,103: DEBUG/MainProcess] celery.backend_cleanup sent. id->6f922e02-085e-49f1-a998-1f04c7632b56 +[2024-04-18 00:00:00,103: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 00:00:00,221: INFO/main] Task celery.backend_cleanup[6f922e02-085e-49f1-a998-1f04c7632b56] received +[2024-04-18 00:00:00,221: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('celery.backend_cleanup', '6f922e02-085e-49f1-a998-1f04c7632b56', {'lang': 'py', 'task': 'celery.backend_cleanup', 'id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'shadow': None, 'eta': None, 'expires': '2024-04-18T16:00:00.092245+00:00', 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'expiration': '43200000', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'bc9c5721-a9cf-4a13-b510-4ec7fa01063e'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '6f922e02-085e-49f1-a998-1f04c7632b56', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal',... kwargs:{}) +[2024-04-18 00:00:00,223: INFO/main] Task celery.backend_cleanup[6f922e02-085e-49f1-a998-1f04c7632b56] succeeded in 0.0004079369828104973s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 00:05:00,204: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:05:00,205: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:10:00,306: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:10:00,307: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:15:00,408: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:15:00,409: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:20:00,510: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:20:00,511: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:25:00,611: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:25:00,613: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:30:00,713: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:30:00,715: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:35:00,815: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:35:00,817: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:40:00,917: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:40:00,919: DEBUG/MainProcess] beat: Waking up in 21.82 seconds. +[2024-04-18 00:40:22,764: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 00:40:22,782: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba +[2024-04-18 00:40:22,782: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 00:40:22,791: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->bf653ea1-7409-4dfc-9966-dcaf49fad190 +[2024-04-18 00:40:22,791: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 00:40:23,126: INFO/main] Task galaxy.prune_history_audit_table[8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba] received +[2024-04-18 00:40:23,126: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'a418f92f-f78f-4db9-a894-9edc03b9ccfd'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 00:40:23,158: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (29.530 ms) +[2024-04-18 00:40:23,159: INFO/main] Task galaxy.prune_history_audit_table[8c5510ac-04e3-4a6e-acc9-13c15b9ef7ba] succeeded in 0.0302895437926054s: None +[2024-04-18 00:40:23,174: INFO/main] Task galaxy.cleanup_short_term_storage[bf653ea1-7409-4dfc-9966-dcaf49fad190] received +[2024-04-18 00:40:23,174: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'bf653ea1-7409-4dfc-9966-dcaf49fad190', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '43aad420-d1ad-428f-8393-13c09eddce76'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'bf653ea1-7409-4dfc-9966-dcaf49fad190', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 00:40:23,176: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.578 ms) +[2024-04-18 00:40:23,176: INFO/main] Task galaxy.cleanup_short_term_storage[bf653ea1-7409-4dfc-9966-dcaf49fad190] succeeded in 0.0010311566293239594s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 00:40:45,759 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (11.739 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 00:45:22,892: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:45:22,894: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:50:22,993: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:50:22,995: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 00:55:23,095: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 00:55:23,101: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:00:23,201: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:00:23,204: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:05:23,304: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:05:23,306: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:10:23,308: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:10:23,311: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:15:23,380: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:15:23,382: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:20:23,429: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:20:23,431: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:25:23,453: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:25:23,455: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:30:23,555: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:30:23,557: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:35:23,658: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:35:23,660: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-18 01:40:22,854: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:40:22,856: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 01:40:22,872: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->541cdee3-933e-4240-8f64-74d0dde00372 +[2024-04-18 01:40:22,872: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 01:40:22,880: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->6f53829a-a597-4c4c-954b-0a7b1edd452c +[2024-04-18 01:40:22,880: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 01:40:23,215: INFO/main] Task galaxy.prune_history_audit_table[541cdee3-933e-4240-8f64-74d0dde00372] received +[2024-04-18 01:40:23,215: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '541cdee3-933e-4240-8f64-74d0dde00372', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '541cdee3-933e-4240-8f64-74d0dde00372', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '541cdee3-933e-4240-8f64-74d0dde00372', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '541cdee3-933e-4240-8f64-74d0dde00372', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '2e33c393-cb9a-4f7a-9a21-6ac307cbc3fe'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '541cdee3-933e-4240-8f64-74d0dde00372', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 01:40:23,234: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (17.088 ms) +[2024-04-18 01:40:23,234: INFO/main] Task galaxy.prune_history_audit_table[541cdee3-933e-4240-8f64-74d0dde00372] succeeded in 0.017524080350995064s: None +[2024-04-18 01:40:23,252: INFO/main] Task galaxy.cleanup_short_term_storage[6f53829a-a597-4c4c-954b-0a7b1edd452c] received +[2024-04-18 01:40:23,252: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '6f53829a-a597-4c4c-954b-0a7b1edd452c', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '5f6aa794-c1a3-467e-9df2-6bb0afadb4a3'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '6f53829a-a597-4c4c-954b-0a7b1edd452c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 01:40:23,254: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.482 ms) +[2024-04-18 01:40:23,254: INFO/main] Task galaxy.cleanup_short_term_storage[6f53829a-a597-4c4c-954b-0a7b1edd452c] succeeded in 0.0008354252204298973s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 01:40:45,774 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (14.047 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 01:45:22,973: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:45:22,975: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:50:23,076: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:50:23,077: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 01:55:23,177: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 01:55:23,180: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:00:23,280: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:00:23,282: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:05:23,382: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:05:23,383: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:10:23,484: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:10:23,486: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:15:23,586: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:15:23,587: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:20:23,659: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:20:23,661: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:25:23,761: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:25:23,762: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:30:23,863: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:30:23,864: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:35:23,885: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:35:23,887: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-18 02:40:22,946: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:40:22,948: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 02:40:22,962: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->eccc1d44-8734-44da-b894-bf09e7b73151 +[2024-04-18 02:40:22,962: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 02:40:22,969: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->3a2ba05d-5889-423f-ae9b-f5259186bc0c +[2024-04-18 02:40:22,970: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 02:40:23,026: INFO/main] Task galaxy.prune_history_audit_table[eccc1d44-8734-44da-b894-bf09e7b73151] received +[2024-04-18 02:40:23,026: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'eccc1d44-8734-44da-b894-bf09e7b73151', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '10b90769-fd04-4bde-a13a-9a8656bfc4e9'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'eccc1d44-8734-44da-b894-bf09e7b73151', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 02:40:23,052: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (21.478 ms) +[2024-04-18 02:40:23,052: INFO/main] Task galaxy.prune_history_audit_table[eccc1d44-8734-44da-b894-bf09e7b73151] succeeded in 0.023734571412205696s: None +[2024-04-18 02:40:23,063: INFO/main] Task galaxy.cleanup_short_term_storage[3a2ba05d-5889-423f-ae9b-f5259186bc0c] received +[2024-04-18 02:40:23,063: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '3a2ba05d-5889-423f-ae9b-f5259186bc0c', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'ba9a3243-b86f-4e7b-a049-7e143c4d6d99'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '3a2ba05d-5889-423f-ae9b-f5259186bc0c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 02:40:23,067: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (2.206 ms) +[2024-04-18 02:40:23,067: INFO/main] Task galaxy.cleanup_short_term_storage[3a2ba05d-5889-423f-ae9b-f5259186bc0c] succeeded in 0.002620689570903778s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 02:40:45,786 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.200 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 02:45:23,070: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:45:23,072: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:50:23,172: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:50:23,173: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 02:55:23,273: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 02:55:23,275: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:00:23,373: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:00:23,375: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:05:23,381: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:05:23,383: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:10:23,453: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:10:23,455: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:15:23,481: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:15:23,483: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:20:23,584: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:20:23,586: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:25:23,593: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:25:23,595: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:30:23,659: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:30:23,662: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:35:23,762: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:35:23,764: DEBUG/MainProcess] beat: Waking up in 4.99 minutes. +[2024-04-18 03:40:23,039: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:40:23,040: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 03:40:23,077: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->b4261d3c-7485-4b1e-8820-49a0384e2597 +[2024-04-18 03:40:23,078: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 03:40:23,119: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->8dc2bcbe-e093-41ee-af87-22815e238aa9 +[2024-04-18 03:40:23,120: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 03:40:23,136: INFO/main] Task galaxy.prune_history_audit_table[b4261d3c-7485-4b1e-8820-49a0384e2597] received +[2024-04-18 03:40:23,136: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'b4261d3c-7485-4b1e-8820-49a0384e2597', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '5c587ed4-b4b0-471a-a5c4-2d837c3ede48'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'b4261d3c-7485-4b1e-8820-49a0384e2597', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 03:40:23,165: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (26.351 ms) +[2024-04-18 03:40:23,165: INFO/main] Task galaxy.prune_history_audit_table[b4261d3c-7485-4b1e-8820-49a0384e2597] succeeded in 0.027185991406440735s: None +[2024-04-18 03:40:23,183: INFO/main] Task galaxy.cleanup_short_term_storage[8dc2bcbe-e093-41ee-af87-22815e238aa9] received +[2024-04-18 03:40:23,183: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '8dc2bcbe-e093-41ee-af87-22815e238aa9', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'e3d8d8c0-e5c9-448e-8e5f-0c9691847758'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '8dc2bcbe-e093-41ee-af87-22815e238aa9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 03:40:23,185: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.724 ms) +[2024-04-18 03:40:23,186: INFO/main] Task galaxy.cleanup_short_term_storage[8dc2bcbe-e093-41ee-af87-22815e238aa9] succeeded in 0.0011645713821053505s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 03:40:45,799 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (11.776 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 03:45:23,220: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:45:23,222: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:50:23,322: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:50:23,324: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 03:55:23,425: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 03:55:23,427: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:00:23,527: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:00:23,529: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:05:23,630: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:05:23,631: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:10:23,732: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:10:23,734: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:15:23,739: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:15:23,741: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:20:23,842: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:20:23,844: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:25:23,944: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:25:23,946: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:30:23,995: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:30:23,996: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:35:24,097: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:35:24,099: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-18 04:40:23,131: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:40:23,133: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 04:40:23,148: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->f2234281-c0ed-401a-a539-f628dee016e7 +[2024-04-18 04:40:23,148: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 04:40:23,157: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->74a34f0a-f180-4fe6-8414-ca8948a758ef +[2024-04-18 04:40:23,157: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 04:40:24,049: INFO/main] Task galaxy.prune_history_audit_table[f2234281-c0ed-401a-a539-f628dee016e7] received +[2024-04-18 04:40:24,049: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'f2234281-c0ed-401a-a539-f628dee016e7', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '37f610fc-1840-4bbe-8790-b74e9f337092'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'f2234281-c0ed-401a-a539-f628dee016e7', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 04:40:24,078: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (27.061 ms) +[2024-04-18 04:40:24,079: INFO/main] Task galaxy.prune_history_audit_table[f2234281-c0ed-401a-a539-f628dee016e7] succeeded in 0.027672781608998775s: None +[2024-04-18 04:40:24,090: INFO/main] Task galaxy.cleanup_short_term_storage[74a34f0a-f180-4fe6-8414-ca8948a758ef] received +[2024-04-18 04:40:24,090: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '74a34f0a-f180-4fe6-8414-ca8948a758ef', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '943c746c-554d-4557-a747-709a41f1f1ca'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '74a34f0a-f180-4fe6-8414-ca8948a758ef', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 04:40:24,092: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.507 ms) +[2024-04-18 04:40:24,092: INFO/main] Task galaxy.cleanup_short_term_storage[74a34f0a-f180-4fe6-8414-ca8948a758ef] succeeded in 0.0008853832259774208s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 04:40:45,813 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.979 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 04:45:23,257: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:45:23,259: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:50:23,359: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:50:23,361: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 04:55:23,453: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 04:55:23,455: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:00:23,556: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:00:23,557: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:05:23,658: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:05:23,660: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:10:23,760: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:10:23,762: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:15:23,863: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:15:23,864: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:20:23,964: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:20:23,966: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:25:24,067: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:25:24,068: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:30:24,125: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:30:24,127: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:35:24,228: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:35:24,229: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-18 05:40:23,223: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:40:23,225: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 05:40:23,241: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->dc7dc411-8b76-41b6-a62e-9aa68bbd7d98 +[2024-04-18 05:40:23,242: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 05:40:23,251: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->66986c3f-80e3-47ea-8c45-d279a175b01e +[2024-04-18 05:40:23,251: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 05:40:23,929: INFO/main] Task galaxy.prune_history_audit_table[dc7dc411-8b76-41b6-a62e-9aa68bbd7d98] received +[2024-04-18 05:40:23,929: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3c1d95b2-3778-40e8-bf33-491d96f79a6d'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'dc7dc411-8b76-41b6-a62e-9aa68bbd7d98', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 05:40:23,958: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (27.948 ms) +[2024-04-18 05:40:23,959: INFO/main] Task galaxy.prune_history_audit_table[dc7dc411-8b76-41b6-a62e-9aa68bbd7d98] succeeded in 0.028529241681098938s: None +[2024-04-18 05:40:23,973: INFO/main] Task galaxy.cleanup_short_term_storage[66986c3f-80e3-47ea-8c45-d279a175b01e] received +[2024-04-18 05:40:23,973: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '66986c3f-80e3-47ea-8c45-d279a175b01e', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'e4c4659d-87e7-4ff5-8b0c-8b1285d1eaa9'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '66986c3f-80e3-47ea-8c45-d279a175b01e', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 05:40:23,975: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.527 ms) +[2024-04-18 05:40:23,975: INFO/main] Task galaxy.cleanup_short_term_storage[66986c3f-80e3-47ea-8c45-d279a175b01e] succeeded in 0.0009161904454231262s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 05:40:45,827 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.637 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 05:45:23,297: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:45:23,299: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:50:23,399: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:50:23,401: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 05:55:23,502: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 05:55:23,504: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:00:23,604: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:00:23,606: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:05:23,706: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:05:23,708: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:10:23,809: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:10:23,811: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:15:23,838: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:15:23,840: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:20:23,933: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:20:23,935: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:25:24,029: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:25:24,031: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:30:24,045: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:30:24,047: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:35:24,082: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:35:24,084: DEBUG/MainProcess] beat: Waking up in 4.99 minutes. +[2024-04-18 06:40:23,316: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:40:23,318: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 06:40:23,343: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->cd57a169-f939-4c17-bb93-0896a65750d3 +[2024-04-18 06:40:23,343: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 06:40:23,356: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2 +[2024-04-18 06:40:23,357: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 06:40:23,749: INFO/main] Task galaxy.prune_history_audit_table[cd57a169-f939-4c17-bb93-0896a65750d3] received +[2024-04-18 06:40:23,750: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'cd57a169-f939-4c17-bb93-0896a65750d3', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'eb86918a-2429-4fca-8b3c-855b680002bc'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'cd57a169-f939-4c17-bb93-0896a65750d3', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 06:40:23,776: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (24.995 ms) +[2024-04-18 06:40:23,776: INFO/main] Task galaxy.prune_history_audit_table[cd57a169-f939-4c17-bb93-0896a65750d3] succeeded in 0.025545649230480194s: None +[2024-04-18 06:40:23,790: INFO/main] Task galaxy.cleanup_short_term_storage[ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2] received +[2024-04-18 06:40:23,790: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'bfc2612a-ad55-4c4a-b0d4-0ca9b0652362'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 06:40:23,792: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.546 ms) +[2024-04-18 06:40:23,792: INFO/main] Task galaxy.cleanup_short_term_storage[ebf20dd8-d415-4d2b-bfcc-efe4aaccd1f2] succeeded in 0.0009263940155506134s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 06:40:45,841 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.355 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 06:45:23,457: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:45:23,459: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:50:23,559: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:50:23,561: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 06:55:23,662: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 06:55:23,664: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:00:23,764: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:00:23,766: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:05:23,866: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:05:23,868: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:10:23,969: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:10:23,971: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:15:24,071: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:15:24,073: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:20:24,081: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:20:24,083: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:25:24,097: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:25:24,099: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:30:24,113: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:30:24,115: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:35:24,129: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:35:24,131: DEBUG/MainProcess] beat: Waking up in 4.99 minutes. +[2024-04-18 07:40:23,408: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:40:23,410: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 07:40:23,425: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->a33384ab-568b-4871-a018-0bb7251256f4 +[2024-04-18 07:40:23,426: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 07:40:23,434: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->3602327b-3bcb-459e-88db-431b691a4fb3 +[2024-04-18 07:40:23,434: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 07:40:23,603: INFO/main] Task galaxy.prune_history_audit_table[a33384ab-568b-4871-a018-0bb7251256f4] received +[2024-04-18 07:40:23,604: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', 'a33384ab-568b-4871-a018-0bb7251256f4', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '5f2ab7bb-638b-41fd-a64c-e5ece060823f'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'a33384ab-568b-4871-a018-0bb7251256f4', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 07:40:23,625: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (20.377 ms) +[2024-04-18 07:40:23,625: INFO/main] Task galaxy.prune_history_audit_table[a33384ab-568b-4871-a018-0bb7251256f4] succeeded in 0.020866602659225464s: None +[2024-04-18 07:40:23,638: INFO/main] Task galaxy.cleanup_short_term_storage[3602327b-3bcb-459e-88db-431b691a4fb3] received +[2024-04-18 07:40:23,639: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '3602327b-3bcb-459e-88db-431b691a4fb3', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '7059a64c-c401-457e-a5c7-3435961f3748'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '3602327b-3bcb-459e-88db-431b691a4fb3', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 07:40:23,640: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.518 ms) +[2024-04-18 07:40:23,641: INFO/main] Task galaxy.cleanup_short_term_storage[3602327b-3bcb-459e-88db-431b691a4fb3] succeeded in 0.0009128199890255928s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 07:40:45,854 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (12.817 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 07:45:23,534: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:45:23,536: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:50:23,637: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:50:23,639: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 07:55:23,739: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 07:55:23,741: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:00:23,841: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:00:23,843: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:05:23,933: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:05:23,935: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:10:24,036: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:10:24,037: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:15:24,137: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:15:24,138: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:20:24,145: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:20:24,147: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:25:24,161: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:25:24,163: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:30:24,209: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:30:24,211: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:35:24,311: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:35:24,313: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-18 08:40:23,460: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:40:23,462: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 08:40:23,477: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->80cd14d1-eb6d-4a69-992e-315f7baee5d0 +[2024-04-18 08:40:23,477: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 08:40:23,485: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->e9156deb-0278-497b-9183-015cd83d485e +[2024-04-18 08:40:23,485: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 08:40:24,134: INFO/main] Task galaxy.prune_history_audit_table[80cd14d1-eb6d-4a69-992e-315f7baee5d0] received +[2024-04-18 08:40:24,135: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '80cd14d1-eb6d-4a69-992e-315f7baee5d0', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '98d69f20-b41e-4431-9464-9e3b01be2268'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '80cd14d1-eb6d-4a69-992e-315f7baee5d0', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 08:40:24,153: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (16.910 ms) +[2024-04-18 08:40:24,153: INFO/main] Task galaxy.prune_history_audit_table[80cd14d1-eb6d-4a69-992e-315f7baee5d0] succeeded in 0.01733121182769537s: None +[2024-04-18 08:40:24,169: INFO/main] Task galaxy.cleanup_short_term_storage[e9156deb-0278-497b-9183-015cd83d485e] received +[2024-04-18 08:40:24,170: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', 'e9156deb-0278-497b-9183-015cd83d485e', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'e9156deb-0278-497b-9183-015cd83d485e', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'e9156deb-0278-497b-9183-015cd83d485e', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': 'e9156deb-0278-497b-9183-015cd83d485e', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '4e80480e-b52f-4cab-9293-c5eeaf25aa4d'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': 'e9156deb-0278-497b-9183-015cd83d485e', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 08:40:24,171: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.468 ms) +[2024-04-18 08:40:24,171: INFO/main] Task galaxy.cleanup_short_term_storage[e9156deb-0278-497b-9183-015cd83d485e] succeeded in 0.0008165780454874039s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 08:40:45,867 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (11.811 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 08:45:23,585: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:45:23,587: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:50:23,687: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:50:23,689: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 08:55:23,741: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 08:55:23,743: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:00:23,843: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:00:23,845: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:05:23,941: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:05:23,942: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:10:23,990: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:10:23,992: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:15:24,092: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:15:24,094: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:20:24,194: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:20:24,196: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:25:24,257: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:25:24,259: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:30:24,273: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:30:24,275: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:35:24,375: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:35:24,377: DEBUG/MainProcess] beat: Waking up in 4.98 minutes. +[2024-04-18 09:40:23,552: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:40:23,554: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 09:40:23,569: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->0222ba67-932b-4b98-b938-57e4b5f2cd0c +[2024-04-18 09:40:23,569: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 09:40:23,577: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->07acb7cc-dca7-48ff-800f-c387d6511954 +[2024-04-18 09:40:23,577: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 09:40:24,094: INFO/main] Task galaxy.prune_history_audit_table[0222ba67-932b-4b98-b938-57e4b5f2cd0c] received +[2024-04-18 09:40:24,095: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '0222ba67-932b-4b98-b938-57e4b5f2cd0c', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'da724dd0-d809-4e19-ac62-0f38ae074a0e'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '0222ba67-932b-4b98-b938-57e4b5f2cd0c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 09:40:24,121: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (24.527 ms) +[2024-04-18 09:40:24,121: INFO/main] Task galaxy.prune_history_audit_table[0222ba67-932b-4b98-b938-57e4b5f2cd0c] succeeded in 0.02495371177792549s: None +[2024-04-18 09:40:24,137: INFO/main] Task galaxy.cleanup_short_term_storage[07acb7cc-dca7-48ff-800f-c387d6511954] received +[2024-04-18 09:40:24,137: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '07acb7cc-dca7-48ff-800f-c387d6511954', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '54e0e291-0917-4d4e-b62a-ab7aabf0f506'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '07acb7cc-dca7-48ff-800f-c387d6511954', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 09:40:24,139: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.468 ms) +[2024-04-18 09:40:24,140: INFO/main] Task galaxy.cleanup_short_term_storage[07acb7cc-dca7-48ff-800f-c387d6511954] succeeded in 0.0008255336433649063s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 09:40:45,881 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.601 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 09:45:23,659: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:45:23,661: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:50:23,665: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:50:23,666: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 09:55:23,767: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 09:55:23,768: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:00:23,801: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:00:23,803: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:05:23,903: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:05:23,904: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:10:24,005: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:10:24,006: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:15:24,107: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:15:24,108: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:20:24,208: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:20:24,210: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:25:24,310: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:25:24,312: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:30:24,367: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:30:24,368: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:35:24,378: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:35:24,379: DEBUG/MainProcess] beat: Waking up in 4.99 minutes. +[2024-04-18 10:40:23,641: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:40:23,643: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table) +[2024-04-18 10:40:23,657: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->1cab00c7-ce29-45cc-8f15-06347cd63ec8 +[2024-04-18 10:40:23,658: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage) +[2024-04-18 10:40:23,663: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->44be2fd4-fea4-4951-957f-fac0cf335b66 +[2024-04-18 10:40:23,663: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery.log <== +[2024-04-18 10:40:23,980: INFO/main] Task galaxy.prune_history_audit_table[1cab00c7-ce29-45cc-8f15-06347cd63ec8] received +[2024-04-18 10:40:23,980: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.prune_history_audit_table', '1cab00c7-ce29-45cc-8f15-06347cd63ec8', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '4aa0edcd-532b-41b9-adf9-c21ec139f487'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '1cab00c7-ce29-45cc-8f15-06347cd63ec8', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 10:40:24,006: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (24.358 ms) +[2024-04-18 10:40:24,006: INFO/main] Task galaxy.prune_history_audit_table[1cab00c7-ce29-45cc-8f15-06347cd63ec8] succeeded in 0.02476848941296339s: None +[2024-04-18 10:40:24,029: INFO/main] Task galaxy.cleanup_short_term_storage[44be2fd4-fea4-4951-957f-fac0cf335b66] received +[2024-04-18 10:40:24,030: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7faa4199a700> (args:('galaxy.cleanup_short_term_storage', '44be2fd4-fea4-4951-957f-fac0cf335b66', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen100448@laila', 'ignore_result': False, 'properties': {'correlation_id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3f24560d-9fc4-49e5-b0db-ad132e682c2f'}, 'reply_to': '800e039e-7621-3e92-b588-790623007822', 'correlation_id': '44be2fd4-fea4-4951-957f-fac0cf335b66', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-04-18 10:40:24,031: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (0.456 ms) +[2024-04-18 10:40:24,031: INFO/main] Task galaxy.cleanup_short_term_storage[44be2fd4-fea4-4951-957f-fac0cf335b66] succeeded in 0.000800449401140213s: None + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +galaxy.util.task DEBUG 2024-04-18 10:40:45,895 [pN:main.1,p:100659,tN:HistoryAuditTablePruneTask] Executed periodic task HistoryAuditTablePruneTask (13.565 ms) + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/celery-beat.log <== +[2024-04-18 10:45:23,761: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:45:23,763: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-04-18 10:50:23,863: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-04-18 10:50:23,865: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /scratch/rico/tmp/tmp12w4107b/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-04-18 10:50:58,143 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET / HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,166 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/base.css?v=1713286767000 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,184 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/analysis.bundled.js?v=1713286767000 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,184 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /static/style/bootstrap-tour.css?v=1713286767000 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,184 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /static/dist/libs.bundled.js?v=1713286767000 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,185 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53968 - "GET /static/style/jquery-ui/smoothness/jquery-ui.css?v=1713286767000 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,500 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /favicon.ico HTTP/1.1" 404 +uvicorn.access INFO 2024-04-18 10:50:58,633 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /api/webhooks HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,655 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/f49a6a2402ca42baecbb.png HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,712 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /welcome HTTP/1.1" 302 +uvicorn.access INFO 2024-04-18 10:50:58,723 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/7c05f33b4fe5f8132439.woff2 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,724 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,734 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /api/webhooks HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,742 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /api/users/current HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,747 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/dist/1551f4f60c37af51121f.woff2 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,748 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /static/welcome.html HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,765 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /static/favicon.svg HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,777 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /static/dist/base.css HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:50:58,789 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /api/tools?in_panel=true&view=default HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,804 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53968 - "GET /api/configuration HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,823 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,852 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /api/histories?view=summary HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,960 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53976 - "GET /api/datatypes?extension_only=False HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:58,961 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53968 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:59,075 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-04-18T14:50:58.377Z HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:59,134 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53956 - "GET /api/genomes HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:59,139 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /api/histories/d23b2492b9db9f5f?view=summary&keys=size,contents_active,user_id HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:59,174 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /api/histories/d23b2492b9db9f5f/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:50:59,177 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /api/users/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:00,347 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53982 - "GET /static/dist/7a3337626410ca2f4071.woff2 HTTP/1.1" 304 +uvicorn.access INFO 2024-04-18 10:51:00,423 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53986 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:02,135 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53990 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:05,174 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:54002 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:08,211 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53098 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:08,694 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53098 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:09,332 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53098 - "GET /api/datasets/b29f83d2817c3b8c/display?to_ext=tgz HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:11,243 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53114 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:14,310 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53130 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:17,373 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40312 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:18,711 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40312 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:20,419 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40312 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:23,485 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40328 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:26,535 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51608 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:28,699 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51614 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:29,570 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51614 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:32,609 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51628 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:35,647 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:51630 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:38,695 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38146 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:38,707 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38150 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:41,730 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38156 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:44,765 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38172 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:47,810 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38190 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:48,711 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38190 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:50,843 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38206 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:53,887 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38208 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:56,922 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40780 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:58,706 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40780 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:51:59,955 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40780 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:03,215 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:40790 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:06,248 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33554 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:08,707 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33564 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:09,282 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:33564 - "GET 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[pN:main.1,p:100659,tN:MainThread] 127.0.0.1:46702 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:27,490 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45368 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:28,708 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45368 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:30,535 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45368 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:33,568 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:45378 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:36,599 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37798 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:38,718 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37810 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:39,631 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37810 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:42,676 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:43,999 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/configuration HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,056 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,106 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/users/current HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,203 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /api/histories?view=summary HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,206 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /history/current_history_json HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/model/__init__.py:467: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + return self.text_metrics + self.numeric_metrics +uvicorn.access INFO 2024-04-18 10:52:44,229 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/jobs/8d6bba82c3443fc0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,380 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37852 - "GET /api/users/current HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,381 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37846 - "GET /api/jobs/8d6bba82c3443fc0/destination_params HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,415 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /api/datasets/b29f83d2817c3b8c/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,584 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/datasets/b29f83d2817c3b8c/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,604 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37834 - "GET /api/datasets/b29f83d2817c3b8c/metrics?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,639 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,681 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/datasets/b29f83d2817c3b8c/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,782 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/histories?view=summary HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,852 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37846 - "GET /api/jobs/8d6bba82c3443fc0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,914 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37852 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:44,948 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37846 - "GET /api/configuration/decode/8d6bba82c3443fc0 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:45,073 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37852 - "GET /api/configuration/decode/b29f83d2817c3b8c HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:45,080 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37834 - "GET /api/configuration/decode/d23b2492b9db9f5f HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:45,123 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37830 - "GET /api/datasets/8d6bba82c3443fc0 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:45,171 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37820 - "GET /api/datasets/9eb32cf8214ea72d HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:45,204 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /api/datasets/b29f83d2817c3b8c HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:45,710 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:37822 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:48,712 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59030 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:48,746 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59030 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:51,779 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59036 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:54,811 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59042 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:57,846 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34806 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:52:58,714 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34806 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:00,879 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34814 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:03,914 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:34830 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:06,947 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53966 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:08,718 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53966 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:09,979 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53966 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:13,011 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:53974 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:16,046 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:38992 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:18,716 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:39008 - 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"GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:34,242 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:43230 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:37,274 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59340 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:38,716 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59340 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:40,306 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59340 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:43,347 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:59348 - "GET /history/current_history_json?since=2024-04-17T22:26:42.000204 HTTP/1.1" 200 +uvicorn.access INFO 2024-04-18 10:53:46,385 [pN:main.1,p:100659,tN:MainThread] 127.0.0.1:44880 - 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