Mercurial > repos > richard-burhans > segalign

diff gapped_extension_options.xml @ 14:f9e91add973c draft

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit eb6ee047d39760f2596b6e343e2dc3898fafc5cd
author richard-burhans
date Mon, 29 Jul 2024 20:53:43 +0000
parents 5c72425b7f1b
children
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--- a/gapped_extension_options.xml	Sat Jul 13 16:51:52 2024 +0000
+++ b/gapped_extension_options.xml	Mon Jul 29 20:53:43 2024 +0000
@@ -1,7 +1,6 @@
 <macros>
     <xml name="gapped_extension_options">
         <section name="gapped_extension_options" expanded="false" title="Gapped Extension Options">
-            <param argument="--nogapped" type="boolean" checked="false" label="Don't perform gapped extension stage"/>
             <param argument="--ydrop" type="integer" value="9430" label="Y-drop value for gapped extension"/>
             <param argument="--gappedthresh" type="integer" value="" optional="true" label="Score threshold for gapped alignments"/>
             <param argument="--notrivial" type="boolean" checked="false" label="Don't output a trivial self-alignment block if the target and query sequences are identical"/>