view seeding_options.xml @ 17:52a13f003b2d draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit b5d08d89e75e2dbfa03f74e45aa6baa465582eee

<macros>
    <xml name="seeding_options">
        <section name="seeding_options" expanded="false" title="Seeding Options">
            <conditional name="seed">
                <param name="seed_selector" type="select" label="Seed patern">
                    <option value="12of19" selected="true">12of19 (1110100110010101111)</option>
                    <option value="14of22">14of22 (1110101100110010101111)</option>
                    <option value="custom">custom</option>
                </param>
                <when value="12of19">
                    <!-- Do nothing -->
                </when>
                <when value="14of22">
                    <!-- Do nothing -->
                </when>
                <when value="custom">
                    <param name="custom_seed" type="text" value="" optional="false" label="Custom seed pattern">
                        <validator type="empty_field"/>
                        <validator type="regex" message="Arbitrary pattern of 1s, 0s, and Ts">^[01T]+$</validator>
                        <sanitizer invalid_char="">
                            <valid initial="none">
                                <add value="0"/>
                                <add value="1"/>
                                <add value="T"/>
                            </valid>
                        </sanitizer>
                    </param>
                </when>
            </conditional>
            <param argument="--step" type="integer" value="1" label="Offset between the starting positions of successive target words considered for generating seed table"/>
            <param argument="--notransition" type="boolean" checked="false" label="Don't allow one transition in a seed hit"/>
        </section>
    </xml>
</macros>