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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
author richard-burhans
date Wed, 17 Apr 2024 18:06:54 +0000
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[arguments]
flag_args =
  allgappedbounds
  anyornone
  gapped
  gfextend
  markend
  nocensus
  noentropy
  nofilter
  nogapped
  nogfextend
  nomirror
  norecoverseeds
  notransition
  notrivial
  notwins
  noytrim
  recoverseeds
  self
  version
  yasra75
  yasra85
  yasra85short
  yasra90
  yasra95
  yasra95short
  yasra98

str_args =
  action:query
  action:target
  ambiguous
  ball
  chores
  filter
  format
  gap
  hspthresh
  include
  match
  maxwordcount
  mismatch
  nochain
  output
  outputmasking
  outputmasking+
  outputmasking+:soft
  outputmasking:soft
  querydepth
  queryhsplimit
  rdotplot
  readgroup
  scores
  seed
  segments
  show
  strand
  targetcapsule
  twins
  writecapsule
  writesegments

int_args =
  allocate:query
  allocate:target
  allocate:traceback
  exact
  gappedthresh
  inner
  masking
  queryhspbest
  step
  word
  xdrop
  ydrop

bool_str_args=
  census
  census16
  census32
  chain
  entropy
  help
  infer
  inferonly
  infscores
  tableonly

bool_int_args=
  progress
  progress+masking
  transition