Mercurial > repos > richard-burhans > segalign

view gapped_extension_options.xml @ 6:6c95c380bfa7 draft

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit a4be517dbe8277bed184b915721964820d7a3af0
author richard-burhans
date Mon, 06 May 2024 17:44:50 +0000
parents 5c72425b7f1b
children f9e91add973c
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<macros>
    <xml name="gapped_extension_options">
        <section name="gapped_extension_options" expanded="false" title="Gapped Extension Options">
            <param argument="--nogapped" type="boolean" checked="false" label="Don't perform gapped extension stage"/>
            <param argument="--ydrop" type="integer" value="9430" label="Y-drop value for gapped extension"/>
            <param argument="--gappedthresh" type="integer" value="" optional="true" label="Score threshold for gapped alignments"/>
            <param argument="--notrivial" type="boolean" checked="false" label="Don't output a trivial self-alignment block if the target and query sequences are identical"/>
        </section>
    </xml>
</macros>