Mercurial > repos > richard-burhans > segalign

view gapped_extension_options.xml @ 3:6f46cebc9ed8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit ceae325563385443efc190130916b5ba3818fa46
author richard-burhans
date Thu, 18 Apr 2024 17:22:46 +0000
parents 5c72425b7f1b
children f9e91add973c
line wrap: on
line source

<macros>
    <xml name="gapped_extension_options">
        <section name="gapped_extension_options" expanded="false" title="Gapped Extension Options">
            <param argument="--nogapped" type="boolean" checked="false" label="Don't perform gapped extension stage"/>
            <param argument="--ydrop" type="integer" value="9430" label="Y-drop value for gapped extension"/>
            <param argument="--gappedthresh" type="integer" value="" optional="true" label="Score threshold for gapped alignments"/>
            <param argument="--notrivial" type="boolean" checked="false" label="Don't output a trivial self-alignment block if the target and query sequences are identical"/>
        </section>
    </xml>
</macros>