Mercurial > repos > richard-burhans > segalign

view gapped_extension_options.xml @ 10:ec709ce3d91b draft

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 701d5b6d0b25dbd9d2a8c08234f3aca7ef502131
author richard-burhans
date Thu, 11 Jul 2024 15:50:48 +0000
parents 5c72425b7f1b
children f9e91add973c
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<macros>
    <xml name="gapped_extension_options">
        <section name="gapped_extension_options" expanded="false" title="Gapped Extension Options">
            <param argument="--nogapped" type="boolean" checked="false" label="Don't perform gapped extension stage"/>
            <param argument="--ydrop" type="integer" value="9430" label="Y-drop value for gapped extension"/>
            <param argument="--gappedthresh" type="integer" value="" optional="true" label="Score threshold for gapped alignments"/>
            <param argument="--notrivial" type="boolean" checked="false" label="Don't output a trivial self-alignment block if the target and query sequences are identical"/>
        </section>
    </xml>
</macros>