Mercurial > repos > richard-burhans > segalign
changeset 13:ae2cd39594eb draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 195ced408efbb08aaeccf05135c27364372b299f
| author | richard-burhans |
|---|---|
| date | Sat, 13 Jul 2024 16:51:52 +0000 |
| parents | e6fde4082c76 |
| children | f9e91add973c |
| files | runner.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/runner.py Sat Jul 13 15:43:14 2024 +0000 +++ b/runner.py Sat Jul 13 16:51:52 2024 +0000 @@ -37,7 +37,7 @@ class LastzCommand: - lastz_command_regex = re.compile(r"lastz (.+?)?ref\.2bit\[nameparse=darkspace\]\[multiple\]\[subset=ref_block(\d+)\.name\] (.+?)?query\.2bit\[nameparse=darkspace\]\[subset=query_block(\d+)\.name] --format=(\S+) --ydrop=(\d+) --gappedthresh=(\d+) --strand=(minus|plus)(?: --ambiguous=(\S+))?(?: --(notrivial))?(?: --scoring=(\S+))? --segments=tmp(\d+)\.block(\d+)\.r(\d+)\.(minus|plus)(?:\.split(\d+))?\.segments --output=tmp(\d+)\.block(\d+)\.r(\d+)\.(minus|plus)(?:\.split(\d+))?\.(\S+) 2> tmp(\d+)\.block(\d+)\.r(\d+)\.(minus|plus)(?:\.split(\d+))?\.err") + lastz_command_regex = re.compile(r"lastz (.+?)?ref\.2bit\[nameparse=darkspace\]\[multiple\]\[subset=ref_block(\d+)\.name\] (.+?)?query\.2bit\[nameparse=darkspace\]\[subset=query_block(\d+)\.name] --format=(\S+) --ydrop=(\d+) --gappedthresh=(\d+) --strand=(minus|plus)(?: --ambiguous=(\S+))?(?: --(notrivial))?(?: --scores=(\S+))? --segments=tmp(\d+)\.block(\d+)\.r(\d+)\.(minus|plus)(?:\.split(\d+))?\.segments --output=tmp(\d+)\.block(\d+)\.r(\d+)\.(minus|plus)(?:\.split(\d+))?\.(\S+) 2> tmp(\d+)\.block(\d+)\.r(\d+)\.(minus|plus)(?:\.split(\d+))?\.err") def __init__(self, line: str) -> None: self.line = line