# HG changeset patch # User rmarenco # Date 1468532734 14400 # Node ID d5c3e461f484337424e70c50f5f5039ed88cc4fe planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty diff -r 000000000000 -r d5c3e461f484 README.md --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Thu Jul 14 17:45:34 2016 -0400 @@ -0,0 +1,11 @@ +Galaxy wrapper for blastXmlToPsl +-------------------------------- + +Converts blast XML output to PSLs + +This tool is configured only to use this command, at the moment: +- blastXmlToPsl -convertToNucCoords $input $output + +Please use another tool or contact me + +(Contains blastXmlToPsl binary for [linux.x86_64](http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/)) diff -r 000000000000 -r d5c3e461f484 blastXmlToPsl.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/blastXmlToPsl.xml Thu Jul 14 17:45:34 2016 -0400 @@ -0,0 +1,20 @@ + + + blastXmlToPsl + + + + + + + + + + + + + \ No newline at end of file diff -r 000000000000 -r d5c3e461f484 test-data/tblastn_Dbia3_ci.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tblastn_Dbia3_ci.xml Thu Jul 14 17:45:34 2016 -0400 @@ -0,0 +1,297 @@ + + + + tblastn + TBLASTN 2.2.30+ + Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. + Dbia3.fa + Query_1 + ci-PA FBpp0088245 + 1397 + + + BLOSUM62 + 0.01 + 11 + 1 + L; + + + + + 1 + Query_1 + ci-PA FBpp0088245 + 1397 + + + 1 + gnl|BL_ORD_ID|0 + contig1 + 0 + 45179 + + + 1 + 852.818 + 2202 + 0 + 576 + 1396 + 31367 + 33826 + 0 + -2 + 540 + 627 + 39 + 840 + KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLQQNNS--RHNLQEHNIDSSPCSEDSHLGKMLGTXXXXXXXXXXXXXXNHHLVNGVRASDSLLTYSPDDLAEXXXXXXXXXXXXXXXXXXXXXXXRAMVNIGNGNASASTIGGSVLARQRFRGRLQTKGINSSTIMLCNIPESNRTFGISELNQRITELKMEPGTDAEIKIPKLPNTTIGGYTEDPLQNQTSFRNTVSNKQG--TVSGSIQGQFRRDSQNSTASTYYGXXXXXXXXXXXXXXXIPTMRPNPSCN-STASFYDPISPGCSRRSSQMSNGANCNSFTSTSGLPVLNKE--SNKSLNACINKPNIGVQGVGIYNXXXXXXXXXHLIATNLKRLQRKDSE--YHNFTSGRFSVPSYMHSLHIKNNKPVGENEFDKAIASNA-RRQTDPVPNINLDPLTNISRFSTTPHSFDINVGKTN--NIASSINKDNLRKDLFTVSIKADMAMTSDQHPNERINLDEVEELILPDEMLQYLNLVKDDTNHLEKEHQAVPVGSNVSETIASNH--YREQSNIYYTNKQILTPPSNVDI----QPNTTKFTVQDKFAMTAVGGSFSQRELSTLAVPNEHGHAKCESFHHQSQKYMNTDIGSKQQSALPSAHQRQTEKSNYNQIIDSSMTSLPELNVDSIYPRNETENIFKVHGDHDNEIQCGIISQSQMSPSTNLNNDGQFSTVNMQPITTSKLF-PPEPQKIVCDTQASNTSVMHLDTYQRTLEYVQSCQNWMETNNTSTNQIQSLPGMPVNNTLFPDVSSSTHPYHGTNMVINDMTTSLTSLLEENRYLQMM + KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLHRDSGQGRHNLQEHNIDSSPCSEELQVGKLIGMSSPSIKSESDESSPHHQLLSGVRASDCFLTYSQDGAAEHITLDDGWDCDDDVDVADLPIVLRAMVNVGSGNSMAPTIGGGVVARQRFRSRLQTKGINSSMVMLGNIPESNRTIGISELNQRITELKMEPGTACDITVPL--NTGLERISEDLSQNQS---NITLNKQSFFTASGSLQGHFRRDSQNSTASTYYGSMQSRRSSQSSQVSSISTMRPGPSYNTTTASLYDPISPGCSRRSSQMSNVVNSYALTSTSGLTAINKDLNANSSPNASINKPGLGGQYFGFYNNSLPPPPSSHLIATNLKHLQDTDSRSCYHNTTGGRFSIPNCTPSLHLDYNGPAGEQEIDKEIPNNILRRQSEPMPNISLDTLTNVSPLSGPLQNLQFPIGKARNVNITSSSNENTLRKGPCHATMKTEMTMTSEQHPNERINLDEVEELILPDEMLQYLNLVKDDQNYMEKDD--VAIRSTVPKTIKSNENLLLSKSNLNPIKKQIILPTSNFDVSINLQPNTSNLQTQEEHTMTTIGGLPSQREQN--IVPHQHEKTKCRSFPQEIDKTINIDIGFKEQPYPSSAYQPQITKSNQNEIIDSSMTSLPELN--PIFTKINSENVSKLHRDQNSEIQCGIVSQSQMSPSININNDGETSTLKNLPLTYSKFSGQPNTQTTVG---GSNTSSMVSDTYQRTLEYVQSCQNWVDTNNSSGDQIQS------NNTLWSDVSSSTHPYAGTNLVINDMTTSLTSLLEENRYLHMM + KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRL +++ RHNLQEHNIDSSPCSE+ +GK++G SSPSIKSESD SS +H L++GVRASD LTYS D AE++ LDDGW+CDDDVDVADLPIVLRAMVN+G+GN+ A TIGG V+ARQRFR RLQTKGINSS +ML NIPESNRT GISELNQRITELKMEPGT +I +P NT + +ED QNQ+ N NKQ T SGS+QG FRRDSQNSTASTYYGSMQSRRSSQSSQVSSI TMRP PS N +TAS YDPISPGCSRRSSQMSN N + TSTSGL +NK+ +N S NA INKP +G Q G YN+SLPPPPSSHLIATNLK LQ DS YHN T GRFS+P+ SLH+ N P GE E DK I +N RRQ++P+PNI+LD LTN+S S + +GK NI SS N++ LRK ++K +M MTS+QHPNERINLDEVEELILPDEMLQYLNLVKDD N++EK+ V + S V +TI SN +SN+ KQI+ P SN D+ QPNT+ Q++ MT +GG SQRE + VP++H KC SF + K +N DIG K+Q SA+Q Q KSN N+IIDSSMTSLPELN I+ + +EN+ K+H D ++EIQCGI+SQSQMSPS N+NNDG+ ST+ P+T SK P Q V SNTS M DTYQRTLEYVQSCQNW++TNN+S +QIQS NNTL+ DVSSSTHPY GTN+VINDMTTSLTSLLEENRYL MM + + + 2 + 604.749 + 1558 + 0 + 14 + 520 + 34107 + 35765 + 0 + -1 + 395 + 432 + 48 + 554 + YSELQFLXXXXXXXXXXXXTVLPGSPCINQHHXXXXXXXXXXXXXXXXGGTSDSIKTS--IQPQICNENTLLGNA-GXXXXXXXXXXXXXXVTGQPH--DFHPAYRIPGYMEQLYSLQRTNSASSFH------------------------DPYVNCASAFHLAGLGLGSADFXXXXXXXXXXELHNXXXXXXXXGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNXXXXXXXXXXXXXXXXXTALNPMSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSL------------------KNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIPGDVKVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT + YSELQFLASRRAAAVAAAATVLPVSPCINHVHTTDVSSSVTVPSMIQTVEASDSIKTATTIQPPICNGNTLLANSTGHHQNHQGQHVHSLNVTGQPHAHEFHPAYRIPGYMEQLYSLQRNGSTTSFHGIVFLCHYT*CPY*TFTYQYL*FLDPYVNCASAFHLAGLGLGSGDFLGTRGMGSLGDLHHAAVAAAAAGSLASTDFHFSIDGNRRLSSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISASAINPISHAHSTLAPRLQ-HLLRASAGLLNPMNTQQAAAAGFSISHAASAAALSLNDVHGNLNDLPGQITPSSTARLVADEHKMAALSVI*NCLIKSYILFI*CF*QKDFNDGNQRNRQRKSTVTEQPSSTSGSVAQVEADSASSHLSDRCYNNIASTTKSIVGDVKTSRRCEDFISSGSASTPLNEYDCANADTTDIKDEPGDFIETNCHWRSCCIEFNTQDELVKHINNDHIQTNKKAFVCRWENCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT + YSELQFLASRRAAAVAAAATVLP SPCIN H TDVSSSVTVPS+I T SDSIKT+ IQP ICN NTLL N+ GH NHQ QHVH++NVTGQPH +FHPAYRIPGYMEQLYSLQR S +SFH DPYVNCASAFHLAGLGLGS DFLG+RG+ SLG+LH+AAVAAAAAGSLASTDFHFS+DGNRRL SPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISA+A+NP+SH HST ++Q HLLRASAGLLNPM QQ AA+GFSI H ++A+L +NDVH NL+D QIT S T + AA S+ K+ +D ++ K V EQPSSTSG VAQVEADSASS LSDRCYNN+ + I GDVK + R +++I+ GS S P NEYDCANADTTDIKDEPGDFIETNCHWRSC IEF TQDELVKHINNDHIQTNKKAFVCRWE+CTRGEKPFKAQYMLVVHMRRHTGEKPHKCT + + + 3 + 119.398 + 298 + 0 + 521 + 575 + 33880 + 34044 + 0 + -3 + 54 + 54 + 0 + 55 + FEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNE + FEGCFKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNE + FEGCFKAYSRLENLKTHLRSHTGEKPY CEYPGCSKAFSNASDRAKHQNRTHSNE + + + 4 + 33.4982 + 75 + 0.0015721 + 1 + 13 + 41471 + 41509 + 0 + -2 + 13 + 13 + 0 + 13 + MDAYALPTYFPLA + MDAYALPTYFPLA + MDAYALPTYFPLA + + + + + + + 1 + 45179 + 66 + 19955683 + 0.041 + 0.267 + 0.14 + + + + + 2 + Query_2 + ci-PC FBpp0300417 + 572 + + + 1 + gnl|BL_ORD_ID|0 + contig1 + 0 + 45179 + + + 1 + 616.69 + 1589 + 0 + 14 + 553 + 33879 + 35765 + 0 + -1 + 416 + 454 + 91 + 630 + YSELQFLXXXXXXXXXXXXTVLPGSPCINQHHXXXXXXXXXXXXXXXXGGTSDSIKT--SIQPQICNENTLLGNA-GXXXXXXXXXXXXXXVTGQPH--DFHPAYRIPGYMEQLYSLQRTNSASSFH------------------------DPYVNCASAFHLAGLGLGSADFXXXXXXXXXXELHNXXXXXXXXGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNXXXXXXXXXXXXXXXXXTALNPMSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSL------------------KNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIPGDVKVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT-------------------------------------------EKNHTLASIRDVAKPLVMLVIAQSIKIEHTVMR + YSELQFLASRRAAAVAAAATVLPVSPCINHVHTTDVSSSVTVPSMIQTVEASDSIKTATTIQPPICNGNTLLANSTGHHQNHQGQHVHSLNVTGQPHAHEFHPAYRIPGYMEQLYSLQRNGSTTSFHGIVFLCHYT*CPY*TFTYQYL*FLDPYVNCASAFHLAGLGLGSGDFLGTRGMGSLGDLHHAAVAAAAAGSLASTDFHFSIDGNRRLSSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISASAINPISHAHSTLAPRLQ-HLLRASAGLLNPMNTQQAAAAGFSISHAASAAALSLNDVHGNLNDLPGQITPSSTARLVADEHKMAALSVI*NCLIKSYILFI*CF*QKDFNDGNQRNRQRKSTVTEQPSSTSGSVAQVEADSASSHLSDRCYNNIASTTKSIVGDVKTSRRCEDFISSGSASTPLNEYDCANADTTDIKDEPGDFIETNCHWRSCCIEFNTQDELVKHINNDHIQTNKKAFVCRWENCTRGEKPFKAQYMLVVHMRRHTGEKPHKCTVRLLLFKIFDFQA*LIVIVFSLKAVLRHIHAWKT*KHIYGHTQVKNPICASIRDAARRLVMQAIVQSIKIVLTVMR + YSELQFLASRRAAAVAAAATVLP SPCIN H TDVSSSVTVPS+I T SDSIKT +IQP ICN NTLL N+ GH NHQ QHVH++NVTGQPH +FHPAYRIPGYMEQLYSLQR S +SFH DPYVNCASAFHLAGLGLGS DFLG+RG+ SLG+LH+AAVAAAAAGSLASTDFHFS+DGNRRL SPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISA+A+NP+SH HST ++Q HLLRASAGLLNPM QQ AA+GFSI H ++A+L +NDVH NL+D QIT S T + AA S+ K+ +D ++ K V EQPSSTSG VAQVEADSASS LSDRCYNN+ + I GDVK + R +++I+ GS S P NEYDCANADTTDIKDEPGDFIETNCHWRSC IEF TQDELVKHINNDHIQTNKKAFVCRWE+CTRGEKPFKAQYMLVVHMRRHTGEKPHKCT KN ASIRD A+ LVM I QSIKI TVMR + + + 2 + 42.3578 + 98 + 1.2328e-06 + 490 + 572 + 33769 + 34056 + 0 + -3 + 37 + 47 + 13 + 96 + DCTRGEKPFKAQYML---VVHMRRHTGEKPHKCTEK--NHTLASIRDVAKPLVML----VIAQSIKIEHTV----MRNRTFVKHLDAQNVTPTRAL + DCF*FEGCFKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNEVSAQPSSNKNNL*LKSFRNRTFVKLLVARNVTPTQVL + DC E FKA L H+R HTGEKP+ C + ++ D AK V AQ ++ + RNRTFVK L A+NVTPT+ L + + + 3 + 30.8018 + 68 + 0.00386248 + 1 + 13 + 41471 + 41509 + 0 + -2 + 13 + 13 + 0 + 13 + MDAYALPTYFPLA + MDAYALPTYFPLA + MDAYALPTYFPLA + + + + + + + 1 + 45179 + 60 + 7679488 + 0.041 + 0.267 + 0.14 + + + + + 3 + Query_3 + ci-PB FBpp0297298 + 1279 + + + 1 + gnl|BL_ORD_ID|0 + contig1 + 0 + 45179 + + + 1 + 855.514 + 2209 + 0 + 458 + 1278 + 31367 + 33826 + 0 + -2 + 540 + 627 + 39 + 840 + KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLQQNNS--RHNLQEHNIDSSPCSEDSHLGKMLGTXXXXXXXXXXXXXXNHHLVNGVRASDSLLTYSPDDLAEXXXXXXXXXXXXXXXXXXXXXXXRAMVNIGNGNASASTIGGSVLARQRFRGRLQTKGINSSTIMLCNIPESNRTFGISELNQRITELKMEPGTDAEIKIPKLPNTTIGGYTEDPLQNQTSFRNTVSNKQG--TVSGSIQGQFRRDSQNSTASTYYGXXXXXXXXXXXXXXXIPTMRPNPSCN-STASFYDPISPGCSRRSSQMSNGANCNSFTSTSGLPVLNKE--SNKSLNACINKPNIGVQGVGIYNXXXXXXXXXHLIATNLKRLQRKDSE--YHNFTSGRFSVPSYMHSLHIKNNKPVGENEFDKAIASNA-RRQTDPVPNINLDPLTNISRFSTTPHSFDINVGKTN--NIASSINKDNLRKDLFTVSIKADMAMTSDQHPNERINLDEVEELILPDEMLQYLNLVKDDTNHLEKEHQAVPVGSNVSETIASNH--YREQSNIYYTNKQILTPPSNVDI----QPNTTKFTVQDKFAMTAVGGSFSQRELSTLAVPNEHGHAKCESFHHQSQKYMNTDIGSKQQSALPSAHQRQTEKSNYNQIIDSSMTSLPELNVDSIYPRNETENIFKVHGDHDNEIQCGIISQSQMSPSTNLNNDGQFSTVNMQPITTSKLF-PPEPQKIVCDTQASNTSVMHLDTYQRTLEYVQSCQNWMETNNTSTNQIQSLPGMPVNNTLFPDVSSSTHPYHGTNMVINDMTTSLTSLLEENRYLQMM + KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRLHRDSGQGRHNLQEHNIDSSPCSEELQVGKLIGMSSPSIKSESDESSPHHQLLSGVRASDCFLTYSQDGAAEHITLDDGWDCDDDVDVADLPIVLRAMVNVGSGNSMAPTIGGGVVARQRFRSRLQTKGINSSMVMLGNIPESNRTIGISELNQRITELKMEPGTACDITVPL--NTGLERISEDLSQNQS---NITLNKQSFFTASGSLQGHFRRDSQNSTASTYYGSMQSRRSSQSSQVSSISTMRPGPSYNTTTASLYDPISPGCSRRSSQMSNVVNSYALTSTSGLTAINKDLNANSSPNASINKPGLGGQYFGFYNNSLPPPPSSHLIATNLKHLQDTDSRSCYHNTTGGRFSIPNCTPSLHLDYNGPAGEQEIDKEIPNNILRRQSEPMPNISLDTLTNVSPLSGPLQNLQFPIGKARNVNITSSSNENTLRKGPCHATMKTEMTMTSEQHPNERINLDEVEELILPDEMLQYLNLVKDDQNYMEKDD--VAIRSTVPKTIKSNENLLLSKSNLNPIKKQIILPTSNFDVSINLQPNTSNLQTQEEHTMTTIGGLPSQREQN--IVPHQHEKTKCRSFPQEIDKTINIDIGFKEQPYPSSAYQPQITKSNQNEIIDSSMTSLPELN--PIFTKINSENVSKLHRDQNSEIQCGIVSQSQMSPSININNDGETSTLKNLPLTYSKFSGQPNTQTTVG---GSNTSSMVSDTYQRTLEYVQSCQNWVDTNNSSGDQIQS------NNTLWSDVSSSTHPYAGTNLVINDMTTSLTSLLEENRYLHMM + KPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSRL +++ RHNLQEHNIDSSPCSE+ +GK++G SSPSIKSESD SS +H L++GVRASD LTYS D AE++ LDDGW+CDDDVDVADLPIVLRAMVN+G+GN+ A TIGG V+ARQRFR RLQTKGINSS +ML NIPESNRT GISELNQRITELKMEPGT +I +P NT + +ED QNQ+ N NKQ T SGS+QG FRRDSQNSTASTYYGSMQSRRSSQSSQVSSI TMRP PS N +TAS YDPISPGCSRRSSQMSN N + TSTSGL +NK+ +N S NA INKP +G Q G YN+SLPPPPSSHLIATNLK LQ DS YHN T GRFS+P+ SLH+ N P GE E DK I +N RRQ++P+PNI+LD LTN+S S + +GK NI SS N++ LRK ++K +M MTS+QHPNERINLDEVEELILPDEMLQYLNLVKDD N++EK+ V + S V +TI SN +SN+ KQI+ P SN D+ QPNT+ Q++ MT +GG SQRE + VP++H KC SF + K +N DIG K+Q SA+Q Q KSN N+IIDSSMTSLPELN I+ + +EN+ K+H D ++EIQCGI+SQSQMSPS N+NNDG+ ST+ P+T SK P Q V SNTS M DTYQRTLEYVQSCQNW++TNN+S +QIQS NNTL+ DVSSSTHPY GTN+VINDMTTSLTSLLEENRYL MM + + + 2 + 529.25 + 1362 + 0 + 1 + 402 + 34107 + 35435 + 0 + -1 + 310 + 341 + 43 + 444 + MEQLYSLQRTNSASSFH------------------------DPYVNCASAFHLAGLGLGSADFXXXXXXXXXXELHNXXXXXXXXGSLASTDFHFSVDGNRRLGSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNXXXXXXXXXXXXXXXXXTALNPMSHVHSTRLQQIQAHLLRASAGLLNPMTPQQVAASGFSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSL------------------KNLDDAREKKGPFKDVVPEQPSSTSGGVAQVEADSASSQLSDRCYNNVVNNITGIPGDVKVNSRLDEYINCGSISIPSNEYDCANADTTDIKDEPGDFIETNCHWRSCRIEFITQDELVKHINNDHIQTNKKAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT + MEQLYSLQRNGSTTSFHGIVFLCHYT*CPY*TFTYQYL*FLDPYVNCASAFHLAGLGLGSGDFLGTRGMGSLGDLHHAAVAAAAAGSLASTDFHFSIDGNRRLSSPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISASAINPISHAHSTLAPRLQ-HLLRASAGLLNPMNTQQAAAAGFSISHAASAAALSLNDVHGNLNDLPGQITPSSTARLVADEHKMAALSVI*NCLIKSYILFI*CF*QKDFNDGNQRNRQRKSTVTEQPSSTSGSVAQVEADSASSHLSDRCYNNIASTTKSIVGDVKTSRRCEDFISSGSASTPLNEYDCANADTTDIKDEPGDFIETNCHWRSCCIEFNTQDELVKHINNDHIQTNKKAFVCRWENCTRGEKPFKAQYMLVVHMRRHTGEKPHKCT + MEQLYSLQR S +SFH DPYVNCASAFHLAGLGLGS DFLG+RG+ SLG+LH+AAVAAAAAGSLASTDFHFS+DGNRRL SPRPPGGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASGSYGHISA+A+NP+SH HST ++Q HLLRASAGLLNPM QQ AA+GFSI H ++A+L +NDVH NL+D QIT S T + AA S+ K+ +D ++ K V EQPSSTSG VAQVEADSASS LSDRCYNN+ + I GDVK + R +++I+ GS S P NEYDCANADTTDIKDEPGDFIETNCHWRSC IEF TQDELVKHINNDHIQTNKKAFVCRWE+CTRGEKPFKAQYMLVVHMRRHTGEKPHKCT + + + 3 + 119.398 + 298 + 0 + 403 + 457 + 33880 + 34044 + 0 + -3 + 54 + 54 + 0 + 55 + FEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNE + FEGCFKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNE + FEGCFKAYSRLENLKTHLRSHTGEKPY CEYPGCSKAFSNASDRAKHQNRTHSNE + + + + + + + 1 + 45179 + 66 + 18186509 + 0.041 + 0.267 + 0.14 + + + + + + diff -r 000000000000 -r d5c3e461f484 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Jul 14 17:45:34 2016 -0400 @@ -0,0 +1,23 @@ + + + + + + + + http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/blastXmlToPsl + + http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/blastXmlToPsl + + + + $INSTALL_DIR/bin/blastXmlToPsl + + + $INSTALL_DIR/bin + + + + The tools downloaded by this dependency definition are free for academic use. + + \ No newline at end of file