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1 <tool id="hubArchiveCreator" name="Hub Archive Creator" version="1.6.0">
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2 <description>
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3 This Galaxy tool permits to prepare your files to be ready for
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4 Assembly Hub visualization.
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5 </description>
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6 <command><![CDATA[
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7 mkdir -p $output.files_path &&
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8 python $__tool_directory__/hubArchiveCreator.py -g $GFF3_Track -f $Fasta_File -d $__tool_directory__ -e $output.files_path -o $output;
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9 ]]></command>
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10 <inputs>
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11 <param
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12 format="gff3"
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13 name="GFF3_Track"
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14 type="data"
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15 label="GFF3 track to display" />
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16
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17 <param
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18 format="fasta"
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19 name="Fasta_File"
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20 type="data"
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21 label="Fasta track to process" />
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22 </inputs>
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23 <outputs>
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24 <data format="huba" name="output" />
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25 </outputs>
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26 <stdio>
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27 <regex match="^pass1"
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28 source="stderr"
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29 level="log"
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30 description="bedToBigBed" />
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31 <!-- TODO: Add the case pass1 and 0 chroms -->
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32 <!-- TODO: Add the case pass2 and 0 records or 0 fields -->
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33 </stdio>
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34
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35 <help>
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36 This Galaxy tool permits to prepare your files to be ready for
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37 Assembly Hub visualization.
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38 </help>
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39 </tool>
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