Mercurial > repos > rmarenco > hub_archive_creator

diff hub-archive-creator-1.6/hubArchiveCreator.xml @ 0:163b2de763ea draft
Upload the full hubArchiveCreator archive
author: rmarenco
date: Tue, 01 Mar 2016 19:43:25 -0500
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hub-archive-creator-1.6/hubArchiveCreator.xml	Tue Mar 01 19:43:25 2016 -0500
@@ -0,0 +1,39 @@
+<tool id="hubArchiveCreator" name="Hub Archive Creator" version="1.6.0">
+    <description>
+        This Galaxy tool permits to prepare your files to be ready for
+        Assembly Hub visualization.
+    </description>
+    <command><![CDATA[
+        mkdir -p $output.files_path &&
+        python $__tool_directory__/hubArchiveCreator.py -g $GFF3_Track -f $Fasta_File -d $__tool_directory__ -e $output.files_path -o $output;
+    ]]></command>
+    <inputs>
+        <param
+          format="gff3"
+          name="GFF3_Track"
+          type="data"
+          label="GFF3 track to display" />
+
+        <param
+          format="fasta"
+          name="Fasta_File"
+          type="data"
+          label="Fasta track to process" />
+    </inputs>
+    <outputs>
+        <data format="huba" name="output" />
+    </outputs>
+    <stdio>
+        <regex match="^pass1"
+               source="stderr"
+               level="log"
+               description="bedToBigBed" />
+        <!-- TODO: Add the case pass1 and 0 chroms -->
+        <!-- TODO: Add the case pass2 and 0 records or 0 fields -->
+    </stdio>
+
+    <help>
+        This Galaxy tool permits to prepare your files to be ready for
+        Assembly Hub visualization.
+    </help>
+</tool>