Mercurial > repos > rmarenco > hubarchivecreator
annotate test-data/bed_cytoband/__main__.log @ 30:e7c4be523cb7 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 2f1b3cc8c9cb463e460f7f79efe99ed472700ecf
author | yating-l |
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date | Tue, 19 Jun 2018 13:02:32 -0400 |
parents | 7e8a8b732db3 |
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rev | line source |
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29
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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1 DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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2 |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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3 DEBUG:root:Calling faToTwoBit: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
4 DEBUG:root:--------- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
5 DEBUG:root: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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6 DEBUG:root:Calling twoBitInfo: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
7 DEBUG:root:--------- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
8 DEBUG:root: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
9 DEBUG:root:Calling sort: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
10 DEBUG:root:--------- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
11 DEBUG:root: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
12 DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_203.dat |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
13 DEBUG:root:data_value: {u'long_label': u'Cytoband', u'name': u'Cytoband', u'database': u'', u'track_color': u'#000000', u'group_name': u'Default group', u'order_index': u'10'} |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
14 DEBUG:root:Calling sort: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
15 DEBUG:root:--------- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
16 DEBUG:root: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
17 DEBUG:root:sorted_bed_file_name: /tmp/tmpyrZVK2.sortedBed |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
18 DEBUG:root:chrom_sizes_file_name: /tmp/tmpw2rT8T.chrom.sizes |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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19 DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/178/dataset_204_files/myHub/Dbia3/tracks/Cytoband.bb |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
20 DEBUG:root:typeOption: bed4+1 |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
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21 DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/cytoBandIdeo.as |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
22 DEBUG:root:tab option: True |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
23 DEBUG:root:Calling bedToBigBed: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
24 DEBUG:root:--------- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
25 DEBUG:root: |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
26 DEBUG:root:----- End of all_datatype_dictionary processing ----- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
27 DEBUG:root:all_datatype_ordered_dictionary keys are: [<cytoBand.cytoBand object at 0x7f3458e87750>] |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
28 DEBUG:root:----- Beginning of Track adding processing ----- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
29 DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/178/dataset_204_files/myHub/Dbia3/groups.txt the group Default group |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
30 DEBUG:root:We just added track cytoBandIdeo (in group default_group) |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
31 DEBUG:root:----- End of Track adding processing ----- |
7e8a8b732db3
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
yating-l
parents:
diff
changeset
|
32 DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### |