Mercurial > repos > rmarenco > hubarchivecreator

comparison Bed.py @ 13:25809f699cb3 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 65ab931ef2b05a5acf06cbde3a746c94a0a0a4cb
author rmarenco
date Thu, 11 Aug 2016 19:02:29 -0400
parents d05236b15f81
children 3233451a3bd6
comparison
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12:747475757cb0 13:25809f699cb3
31 # TODO: Change the name of the bb, to tool + genome + possible adding if multiple + .bb 31 # TODO: Change the name of the bb, to tool + genome + possible adding if multiple + .bb
32 trackName = "".join( ( self.name_bed_generic, ".bb") ) 32 trackName = "".join( ( self.name_bed_generic, ".bb") )
33 33
34 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName) 34 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName)
35 with open(myBigBedFilePath, 'w') as self.bigBedFile: 35 with open(myBigBedFilePath, 'w') as self.bigBedFile:
36 subtools.bedToBigBed(self.sortedBedFile.name, self.chromSizesFile.name, self.bigBedFile.name) 36 subtools.bedToBigBed(self.sortedBedFile.name,
37 self.chromSizesFile.name,
38 self.bigBedFile.name)
37 39
38 # Create the Track Object 40 # Create the Track Object
39 self.createTrack(file_path=trackName, 41 self.createTrack(file_path=trackName,
40 track_name=trackName, 42 track_name=trackName,
41 long_label=self.name_bed_generic, track_type='bigBed', visibility='dense', 43 long_label=self.name_bed_generic, track_type='bigBed', visibility='dense',