Mercurial > repos > rmarenco > hubarchivecreator

comparison BigWig.py @ 16:3233451a3bd6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit fc73ec22a0db3ab09c4ac13dc58f0b54ae37845c
author rmarenco
date Sun, 25 Sep 2016 11:25:38 -0400
parents 25809f699cb3
children c02720d1afee
comparison
equal deleted inserted replaced
15:2a45cd656e8e 16:3233451a3bd6
16 self.track = None 16 self.track = None
17 17
18 self.input_bigwig_path = input_bigwig_path 18 self.input_bigwig_path = input_bigwig_path
19 self.name_bigwig = data_bigwig["name"] 19 self.name_bigwig = data_bigwig["name"]
20 self.priority = data_bigwig["order_index"] 20 self.priority = data_bigwig["order_index"]
21 self.track_color = data_bigwig["track_color"]
21 22
22 #print "Creating TrackHub BigWig from (falsePath: %s; name: %s)" % ( self.input_bigwig_path, self.name_bigwig ) 23 #print "Creating TrackHub BigWig from (falsePath: %s; name: %s)" % ( self.input_bigwig_path, self.name_bigwig )
23 24
24 trackName = "".join( ( self.name_bigwig, ".bigwig" ) ) 25 trackName = "".join( ( self.name_bigwig, ".bigwig" ) )
25 26
30 self.createTrack(file_path=trackName, 31 self.createTrack(file_path=trackName,
31 track_name=trackName, 32 track_name=trackName,
32 long_label=self.name_bigwig, 33 long_label=self.name_bigwig,
33 track_type='bigWig', visibility='full', 34 track_type='bigWig', visibility='full',
34 priority=self.priority, 35 priority=self.priority,
35 track_file=myBigWigFilePath) 36 track_file=myBigWigFilePath,
37 track_color=self.track_color)
36 38
37 # dataURL = "tracks/%s" % trackName 39 # dataURL = "tracks/%s" % trackName
38 # 40 #
39 # # Return the BigBed track 41 # # Return the BigBed track
40 # 42 #