Mercurial > repos > rmarenco > hubarchivecreator
comparison test-data/one_group_two_tracks/__main__.log @ 29:7e8a8b732db3 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
| author | yating-l |
|---|---|
| date | Wed, 16 May 2018 18:04:20 -0400 |
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| children |
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| 28:6aa28a85cc38 | 29:7e8a8b732db3 |
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| 1 DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### | |
| 2 | |
| 3 DEBUG:root:Calling faToTwoBit: | |
| 4 DEBUG:root:--------- | |
| 5 DEBUG:root: | |
| 6 DEBUG:root:Calling twoBitInfo: | |
| 7 DEBUG:root:--------- | |
| 8 DEBUG:root: | |
| 9 DEBUG:root:Calling sort: | |
| 10 DEBUG:root:--------- | |
| 11 DEBUG:root: | |
| 12 DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_154.dat | |
| 13 DEBUG:root:data_value: {u'index': u'/home/galaxy/galaxy/database/datasets/_metadata_files/000/metadata_5.dat', u'long_label': u'HISAT sequence alignment', u'name': u'HISAT2_on_data_1,_data_3,_and_data_2', u'database': u'', u'track_color': u'#c0504d', u'group_name': u'RNA-Seq', u'order_index': u'11'} | |
| 14 DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_158.dat | |
| 15 DEBUG:root:data_value: {u'long_label': u'StringTie transcripts ', u'name': u'StringTie_on_data_15:_Assembled_transcripts', u'database': u'', u'track_color': u'#c0504d', u'group_name': u'RNA-Seq', u'order_index': u'10'} | |
| 16 DEBUG:root:Calling gtfToGenePred: | |
| 17 DEBUG:root:--------- | |
| 18 DEBUG:root: | |
| 19 DEBUG:root:Calling genePredToBigGenePred: | |
| 20 DEBUG:root:--------- | |
| 21 DEBUG:root: | |
| 22 DEBUG:root:Calling sort: | |
| 23 DEBUG:root:--------- | |
| 24 DEBUG:root: | |
| 25 DEBUG:root:sorted_bed_file_name: /tmp/tmpp_i4_J.sortedBed.bigGenePred | |
| 26 DEBUG:root:chrom_sizes_file_name: /tmp/tmpTsX28d.chrom.sizes | |
| 27 DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/150/dataset_177_files/myHub/Dbia3/tracks/StringTie_on_data_15:_Assembled_transcripts.bb | |
| 28 DEBUG:root:typeOption: bed12+8 | |
| 29 DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/bigGenePred.as | |
| 30 DEBUG:root:tab option: True | |
| 31 DEBUG:root:Calling bedToBigBed: | |
| 32 DEBUG:root:--------- | |
| 33 DEBUG:root: | |
| 34 DEBUG:root:----- End of all_datatype_dictionary processing ----- | |
| 35 DEBUG:root:all_datatype_ordered_dictionary keys are: [<Bam.Bam object at 0x7f11363da650>, <Gtf.Gtf object at 0x7f11363da6d0>] | |
| 36 DEBUG:root:----- Beginning of Track adding processing ----- | |
| 37 DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/150/dataset_177_files/myHub/Dbia3/groups.txt the group RNA-Seq | |
| 38 DEBUG:root:We just added track gonramp_HISAT2_on_data_1__data_3__and_data_2_bam (in group rna-seq) | |
| 39 DEBUG:root:We DON'T add in /home/galaxy/galaxy/database/jobs/000/150/dataset_177_files/myHub/Dbia3/groups.txt the group RNA-Seq | |
| 40 DEBUG:root:We just added track gonramp_StringTie_on_data_15__Assembled_transcripts_bb (in group rna-seq) | |
| 41 DEBUG:root:----- End of Track adding processing ----- | |
| 42 DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### |