Mercurial > repos > rmarenco > hubarchivecreator
comparison tool_dependencies.xml @ 14:cbd8982c9f51 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 38f01a73fea83321618501978a3a505b5e8ab527
| author | rmarenco |
|---|---|
| date | Mon, 15 Aug 2016 19:19:32 -0400 |
| parents | df9e12da0d13 |
| children | c02720d1afee |
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| 13:25809f699cb3 | 14:cbd8982c9f51 |
|---|---|
| 6 - sort | 6 - sort |
| 7 - bedToBigBed | 7 - bedToBigBed |
| 8 - gff3ToGenePred | 8 - gff3ToGenePred |
| 9 - gtfToGenePred | 9 - gtfToGenePred |
| 10 - genePredToBed | 10 - genePredToBed |
| 11 - genePredToBigGenePred | |
| 11 - faToTwoBit | 12 - faToTwoBit |
| 12 - samtools | 13 - samtools |
| 13 --> | 14 --> |
| 14 <package name="ucsc_tools" version="312"> | 15 <package name="ucsc_tools" version="312"> |
| 15 <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 16 <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 77 </action> | 78 </action> |
| 78 </actions> | 79 </actions> |
| 79 </install> | 80 </install> |
| 80 <readme>The tools downloaded by this dependency definition are free for academic use.</readme> | 81 <readme>The tools downloaded by this dependency definition are free for academic use.</readme> |
| 81 </package> | 82 </package> |
| 83 | |
| 84 http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/genePredToBigGenePred | |
| 85 | |
| 86 <!-- Package genePredToBigGenePred --> | |
| 87 <package name="genePredToBigGenePred" version="0.0.1"> | |
| 88 <install version="1.0"> | |
| 89 <actions> | |
| 90 <action target_directory="bin" type="download_binary"> | |
| 91 <url_template os="darwin"> | |
| 92 http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/genePredToBigGenePred | |
| 93 </url_template> | |
| 94 <url_template os="linux"> | |
| 95 http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/genePredToBigGenePred | |
| 96 </url_template> | |
| 97 </action> | |
| 98 <action type="chmod"> | |
| 99 <file mode="750">$INSTALL_DIR/bin/genePredToBigGenePred</file> | |
| 100 </action> | |
| 101 <action type="set_environment"> | |
| 102 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 103 </action> | |
| 104 </actions> | |
| 105 </install> | |
| 106 <readme>The tools downloaded by this dependency definition are free for academic use.</readme> | |
| 107 </package> | |
| 82 </tool_dependency> | 108 </tool_dependency> |