Mercurial > repos > rmarenco > hubarchivecreator
comparison BigBed.py @ 26:df42241d3731 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit c11beb58525fe6453a2180fe7783f6e8b0151901-dirty
| author | yating-l |
|---|---|
| date | Mon, 03 Jul 2017 17:30:20 -0400 |
| parents | fcc1021bd496 |
| children |
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| 25:99dad5f9444c | 26:df42241d3731 |
|---|---|
| 19 self.input_bigbed_path = input_bigbed_path | 19 self.input_bigbed_path = input_bigbed_path |
| 20 self.name_bigbed = data_bigbed["name"] | 20 self.name_bigbed = data_bigbed["name"] |
| 21 self.priority = data_bigbed["order_index"] | 21 self.priority = data_bigbed["order_index"] |
| 22 self.track_color = data_bigbed["track_color"] | 22 self.track_color = data_bigbed["track_color"] |
| 23 self.group_name = data_bigbed["group_name"] | 23 self.group_name = data_bigbed["group_name"] |
| 24 self.database = data_bigbed["database"] | |
| 24 | 25 |
| 25 track_name = "".join((self.name_bigbed, ".bigbed")) | 26 track_name = "".join((self.name_bigbed, ".bigbed")) |
| 26 if data_bigbed["long_label"]: | 27 if data_bigbed["long_label"]: |
| 27 self.long_label = data_bigbed["long_label"] | 28 self.long_label = data_bigbed["long_label"] |
| 28 else: | 29 else: |
| 41 track_type=track_type, | 42 track_type=track_type, |
| 42 visibility='hide', | 43 visibility='hide', |
| 43 priority=self.priority, | 44 priority=self.priority, |
| 44 track_file=bigbed_file_path, | 45 track_file=bigbed_file_path, |
| 45 track_color=self.track_color, | 46 track_color=self.track_color, |
| 46 group_name=self.group_name) | 47 group_name=self.group_name, |
| 48 database=self.database) | |
| 47 | 49 |
| 48 print "- BigBed %s created" % self.name_bigbed | 50 print "- BigBed %s created" % self.name_bigbed |
| 49 | 51 |
| 50 | 52 |
| 51 def determine_track_type(self, bb_file): | 53 def determine_track_type(self, bb_file): |