Mercurial > repos > rmarenco > hubarchivecreator

comparison Datatype.py @ 26:df42241d3731 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit c11beb58525fe6453a2180fe7783f6e8b0151901-dirty
author yating-l
date Mon, 03 Jul 2017 17:30:20 -0400
parents 2677f1899aa8
children
comparison
equal deleted inserted replaced
25:99dad5f9444c 26:df42241d3731
74 # TODO: Use default parameters for some, like visibility 74 # TODO: Use default parameters for some, like visibility
75 def createTrack(self, 75 def createTrack(self,
76 file_path=None, 76 file_path=None,
77 track_name=None, long_label=None, thick_draw_item='off', 77 track_name=None, long_label=None, thick_draw_item='off',
78 short_label=None, track_type=None, visibility=None, priority=None, 78 short_label=None, track_type=None, visibility=None, priority=None,
79 track_file=None, track_color='#000000', group_name="Default"): 79 track_file=None, track_color='#000000', group_name="Default", database=""):
80 80
81 # TODO: Remove the hardcoded "tracks" by the value used as variable from myTrackFolderPath 81 # TODO: Remove the hardcoded "tracks" by the value used as variable from myTrackFolderPath
82 data_url = "tracks/%s" % file_path 82 data_url = "tracks/%s" % file_path
83 83
84 if not short_label: 84 if not short_label:
95 rgb_array = [int(hexa_without_sharp[i:i+2], 16) for i in (0, 2, 4)] 95 rgb_array = [int(hexa_without_sharp[i:i+2], 16) for i in (0, 2, 4)]
96 rgb_ucsc = ','.join(map(str, rgb_array)) 96 rgb_ucsc = ','.join(map(str, rgb_array))
97 97
98 #sanitize the track_name 98 #sanitize the track_name
99 sanitized_name = subtools.fixName(track_name) 99 sanitized_name = subtools.fixName(track_name)
100
101 track_db = TrackDb( 100 track_db = TrackDb(
102 trackName=sanitized_name, 101 trackName=sanitized_name,
103 longLabel=long_label, 102 longLabel=long_label,
104 shortLabel=short_label, 103 shortLabel=short_label,
105 trackDataURL=data_url, 104 trackDataURL=data_url,
106 trackType=track_type, 105 trackType=track_type,
107 visibility=visibility, 106 visibility=visibility,
108 thickDrawItem=thick_draw_item, 107 thickDrawItem=thick_draw_item,
109 priority=priority, 108 priority=priority,
110 track_color=rgb_ucsc, 109 track_color=rgb_ucsc,
111 group_name=group_name 110 group_name=group_name,
111 database=database
112 ) 112 )
113 113
114 # Return the Bam Track Object 114 # Return the Bam Track Object
115 self.track = Track( 115 self.track = Track(
116 trackFile=track_file, 116 trackFile=track_file,