Mercurial > repos > rmarenco > hubarchivecreator

comparison templates/trackDb/layout.txt @ 26:df42241d3731 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit c11beb58525fe6453a2180fe7783f6e8b0151901-dirty
author yating-l
date Mon, 03 Jul 2017 17:30:20 -0400
parents fcc1021bd496
children cdd33c5c8ac1
comparison
equal deleted inserted replaced
25:99dad5f9444c 26:df42241d3731
12 type ${trackDb.trackType} 12 type ${trackDb.trackType}
13 autoScale on 13 autoScale on
14 maxHeightPixels 100:32:8 14 maxHeightPixels 100:32:8
15 windowingFunction mean+whiskers 15 windowingFunction mean+whiskers
16 16
17 % elif "bigBed 12 +" in trackDb.trackType and trackDb.database:
18
19 track ${trackDb.trackName}
20 longLabel ${trackDb.longLabel}
21 shortLabel ${trackDb.shortLabel}
22 bigDataUrl ${trackDb.trackDataURL}
23 type ${trackDb.trackType}
24 visibility ${trackDb.visibility}
25 thickDrawItem ${trackDb.thickDrawItem}
26 priority ${trackDb.priority}
27 color ${trackDb.track_color}
28 group ${trackDb.group_name.lower().replace(' ', '_')}
29 searchIndex name
30 % if "NCBI" in trackDb.database:
31 url https://www.ncbi.nlm.nih.gov/protein/$$
32 urlLabel ${trackDb.database} Details:
33 % elif "UniProt" in trackDb.database:
34 url http://www.uniprot.org/uniprot/$$
35 urlLabel ${trackDb.database} Details:
36 % elif "FlyBase" in trackDb.database:
37 url http://flybase.org/reports/$$
38 urlLabel ${trackDb.database} Details:
39 % else:
40 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
41 urlLabel NCBI Details:
42 % endif
43
44 % elif "bigPsl" in trackDb.trackType and trackDb.database:
45
46 track ${trackDb.trackName}
47 longLabel ${trackDb.longLabel}
48 shortLabel ${trackDb.shortLabel}
49 bigDataUrl ${trackDb.trackDataURL}
50 type ${trackDb.trackType}
51 visibility ${trackDb.visibility}
52 thickDrawItem ${trackDb.thickDrawItem}
53 priority ${trackDb.priority}
54 color ${trackDb.track_color}
55 group ${trackDb.group_name.lower().replace(' ', '_')}
56 searchIndex name
57 % if "NCBI" in trackDb.database:
58 url https://www.ncbi.nlm.nih.gov/nuccore/$$
59 urlLabel NCBI Details:
60 % else:
61 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
62 urlLabel NCBI Details:
63 % endif
64
17 % else: 65 % else:
18 66
19 ## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html 67 ## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html
20 track ${trackDb.trackName} 68 track ${trackDb.trackName}
21 longLabel ${trackDb.longLabel} 69 longLabel ${trackDb.longLabel}
25 visibility ${trackDb.visibility} 73 visibility ${trackDb.visibility}
26 thickDrawItem ${trackDb.thickDrawItem} 74 thickDrawItem ${trackDb.thickDrawItem}
27 priority ${trackDb.priority} 75 priority ${trackDb.priority}
28 color ${trackDb.track_color} 76 color ${trackDb.track_color}
29 group ${trackDb.group_name.lower().replace(' ', '_')} 77 group ${trackDb.group_name.lower().replace(' ', '_')}
30 78 searchIndex name
31 % endif 79 % endif
32 % endfor 80 % endfor