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comparison tool_dependencies.xml @ 24:fcc1021bd496 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 93e2e2fb59f99677425104a80c17f665fa7b2b4a-dirty
author yating-l
date Wed, 31 May 2017 11:35:16 -0400
parents 40469b265ddb
children 99dad5f9444c
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23:2677f1899aa8 24:fcc1021bd496
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!-- UCSC Tools in -->
4 <!-- Useful for HAC are: 3 <!-- Useful for HAC are:
5 - twoBitInfo 4 - twoBitInfo
6 - sort 5 - sort
7 - bedToBigBed 6 - bedToBigBed
8 - gff3ToGenePred 7 - gff3ToGenePred
14 - pslToBigPsl 13 - pslToBigPsl
15 --> 14 -->
16 <package name="samtools" version="1.2"> 15 <package name="samtools" version="1.2">
17 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
18 </package> 17 </package>
19 18 <package name="ucsc_hac" version="340">
20 <package name="ucsc_tools_340" version="1.0"> 19 <repository changeset_revision="a819439b6d76" name="package_ucsc_hac_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" />
21 <install version="1.0">
22 <actions_group>
23 <actions architecture="x86_64" os="linux">
24 <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action>
25 <action type="move_directory_files">
26 <source_directory>.</source_directory>
27 <destination_directory>$INSTALL_DIR/bin</destination_directory>
28 </action>
29 </actions>
30 <action type="set_environment">
31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
32 </action>
33 </actions_group>
34 </install>
35 <readme>The well known UCSC tools from Jim Kent.</readme>
36 </package> 20 </package>
37 21 <package name="ucsc_bigbed" version="340">
22 <repository changeset_revision="b23d341df89d" name="package_ucsc_bigbed_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" />
23 </package>
24
25 <package name="ucsc_bigwig" version="340">
26 <repository changeset_revision="b1fb46f92da0" name="package_ucsc_bigwig_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" />
27 </package>
28
38 </tool_dependency> 29 </tool_dependency>