diff Bam.py @ 23:2677f1899aa8 draft

planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 07210e24fe7d22f5dfc84061310280f67f781fb1-dirty

--- a/Bam.py	Wed Apr 12 17:03:51 2017 -0400
+++ b/Bam.py	Tue May 09 15:42:43 2017 -0400
@@ -37,7 +37,10 @@
 
         # TODO: Think about how to avoid repetition of the group_name everywhere
         self.group_name = self.data_bam["group_name"]
-
+        if self.data_bam["long_label"]:
+            self.long_label = self.data_bam["long_label"]
+        else:
+            self.long_label = self.name_bam
         # First: Add the bam file
         # Second: Add the bam index file, in the same folder (https://genome.ucsc.edu/goldenpath/help/bam.html)
 
@@ -52,7 +55,7 @@
         # Create the Track Object
         self.createTrack(file_path=self.name_bam,
                          track_name=self.name_bam,
-                         long_label=self.name_bam, track_type='bam', visibility='pack', priority=self.priority,
+                         long_label=self.long_label, track_type='bam', visibility='pack', priority=self.priority,
                          track_file=bam_index_file_path,
                          track_color=self.track_color,
                          group_name=self.group_name