Mercurial > repos > rmarenco > hubarchivecreator

diff test-data/two_groups_multiple_tracks/__main__.log @ 29:7e8a8b732db3 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
author yating-l
date Wed, 16 May 2018 18:04:20 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/two_groups_multiple_tracks/__main__.log	Wed May 16 18:04:20 2018 -0400
@@ -0,0 +1,68 @@
+DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####
+
+DEBUG:root:Calling faToTwoBit:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling twoBitInfo:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling sort:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_154.dat
+DEBUG:root:data_value: {u'index': u'/home/galaxy/galaxy/database/datasets/_metadata_files/000/metadata_6.dat', u'long_label': u'', u'name': u'HISAT2_Accepted_Hits', u'database': u'', u'track_color': u'#000000', u'group_name': u'Default group', u'order_index': u'11'}
+DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_157.dat
+DEBUG:root:data_value: {u'long_label': u'', u'name': u'RNA-Seq_Alignment_Coverage', u'database': u'', u'track_color': u'#000000', u'group_name': u'Default group', u'order_index': u'10'}
+DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_150.dat
+DEBUG:root:data_value: {u'long_label': u'', u'name': u'Multi-Fasta_GlimmerHMM_Gene_Predictions', u'database': u'', u'track_color': u'#000000', u'group_name': u'Other group', u'order_index': u'21'}
+DEBUG:root:Calling gff3ToGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling genePredToBigGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling sort:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:sorted_bed_file_name: /tmp/tmpCO1Rvj.sorted.bigGenePred
+DEBUG:root:chrom_sizes_file_name: /tmp/tmpa23XII.chrom.sizes
+DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/188/dataset_213_files/myHub/Dbia3/tracks/Multi-Fasta_GlimmerHMM_Gene_Predictions.bb
+DEBUG:root:typeOption: bed12+8
+DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/bigGenePred.as
+DEBUG:root:tab option: True
+DEBUG:root:Calling bedToBigBed:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_158.dat
+DEBUG:root:data_value: {u'long_label': u'', u'name': u'StringTie_Assembled_Transcripts', u'database': u'', u'track_color': u'#000000', u'group_name': u'Other group', u'order_index': u'20'}
+DEBUG:root:Calling gtfToGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling genePredToBigGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling sort:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:sorted_bed_file_name: /tmp/tmpq6ZNag.sortedBed.bigGenePred
+DEBUG:root:chrom_sizes_file_name: /tmp/tmpa23XII.chrom.sizes
+DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/188/dataset_213_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb
+DEBUG:root:typeOption: bed12+8
+DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/bigGenePred.as
+DEBUG:root:tab option: True
+DEBUG:root:Calling bedToBigBed:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:----- End of all_datatype_dictionary processing -----
+DEBUG:root:all_datatype_ordered_dictionary keys are: [<Bam.Bam object at 0x7efc7727b690>, <BigWig.BigWig object at 0x7efc7727b750>, <Gtf.Gtf object at 0x7efc7727b850>, <Gff3.Gff3 object at 0x7efc7727b810>]
+DEBUG:root:----- Beginning of Track adding processing -----
+DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/188/dataset_213_files/myHub/Dbia3/groups.txt the group Default group
+DEBUG:root:We just added track gonramp_HISAT2_Accepted_Hits_bam (in group default_group)
+DEBUG:root:We DON'T add in /home/galaxy/galaxy/database/jobs/000/188/dataset_213_files/myHub/Dbia3/groups.txt the group Default group
+DEBUG:root:We just added track gonramp_RNA_Seq_Alignment_Coverage_bigwig (in group default_group)
+DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/188/dataset_213_files/myHub/Dbia3/groups.txt the group Other group
+DEBUG:root:We just added track gonramp_StringTie_Assembled_Transcripts_bb (in group other_group)
+DEBUG:root:We DON'T add in /home/galaxy/galaxy/database/jobs/000/188/dataset_213_files/myHub/Dbia3/groups.txt the group Other group
+DEBUG:root:We just added track gonramp_Multi_Fasta_GlimmerHMM_Gene_Predictions_bb (in group other_group)
+DEBUG:root:----- End of Track adding processing -----
+DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####