diff Gff3.py @ 17:c02720d1afee draft

planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1adbf397de1fc7af4d91e026093d7fff983e21cf

--- a/Gff3.py	Sun Sep 25 11:25:38 2016 -0400
+++ b/Gff3.py	Fri Sep 30 15:14:24 2016 -0400
@@ -20,6 +20,8 @@
         self.name_gff3 = data_gff3["name"]
         self.priority = data_gff3["order_index"]
         self.track_color = data_gff3["track_color"]
+        # TODO: Think about how to avoid repetition of the group_name everywhere
+        self.group_name = data_gff3["group_name"]
 
         # TODO: See if we need these temporary files as part of the generated files
         unsorted_genePred_file = tempfile.NamedTemporaryFile(bufsize=0, suffix=".genePred")
@@ -59,6 +61,7 @@
                          track_type='bigGenePred', visibility='dense',
                          priority=self.priority,
                          track_file=myBigBedFilePath,
-                         track_color=self.track_color)
+                         track_color=self.track_color,
+                         group_name=self.group_name)
 
         print("- Gff3 %s created" % self.name_gff3)