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view test-data/gtf_gff/__main__.log @ 29:7e8a8b732db3 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
author yating-l
date Wed, 16 May 2018 18:04:20 -0400
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DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####

DEBUG:root:Calling faToTwoBit:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling twoBitInfo:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling sort:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1184.dat
DEBUG:root:data_value: {u'order_index': u'10', u'name': u'Augustus_Gene_Predictions', u'track_color': u'#000000', u'group_name': u'Default group'}
DEBUG:root:Calling gff3ToGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling genePredToBigGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling sort:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmp7sqcWp.sorted.bigGenePred
DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpp6ZdZ_.chrom.sizes
DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/tracks/Augustus_Gene_Predictions.bb
DEBUG:root:typeOption: bed12+8
DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as
DEBUG:root:tab option: True
DEBUG:root:Calling bedToBigBed:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1197.dat
DEBUG:root:data_value: {u'order_index': u'11', u'name': u'StringTie_Assembled_Transcripts', u'track_color': u'#000000', u'group_name': u'Default group'}
DEBUG:root:Calling gtfToGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling genePredToBigGenePred:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:Calling sort:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmp66b4It.sortedBed.bigGenePred
DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpp6ZdZ_.chrom.sizes
DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb
DEBUG:root:typeOption: bed12+8
DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as
DEBUG:root:tab option: True
DEBUG:root:Calling bedToBigBed:
DEBUG:root:---------
DEBUG:root:	
DEBUG:root:----- End of all_datatype_dictionary processing -----
DEBUG:root:all_datatype_ordered_dictionary keys are: [<Gtf.Gtf object at 0x1ecae10>, <Gff3.Gff3 object at 0x1ecad10>]
DEBUG:root:----- Beginning of Track adding processing -----
DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/groups.txt the group Default group
DEBUG:root:We just added track StringTie_Assembled_Transcripts.bb (in group default_group)
DEBUG:root:We DON'T add in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/groups.txt the group Default group
DEBUG:root:We just added track Augustus_Gene_Predictions.bb (in group default_group)
DEBUG:root:----- End of Track adding processing -----
DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####