Mercurial > repos > rmarenco > hubarchivecreator
view util/index/TrixIndex.py @ 30:e7c4be523cb7 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 2f1b3cc8c9cb463e460f7f79efe99ed472700ecf
author | yating-l |
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date | Tue, 19 Jun 2018 13:02:32 -0400 |
parents | 7e8a8b732db3 |
children |
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#!/usr/bin/python import os import collections import shutil import logging from ExternIndex import ExternIndex class TrixIndex(ExternIndex): def __init__(self, indexIx, indexIxx, trackName, mySpecieFolderPath, trixId, **args): self.logger = logging.getLogger(__name__) self.indexIx = indexIx self.indexIxx = indexIxx self.trackName = trackName self.mySpecieFolderPath = mySpecieFolderPath self.index_settings = collections.OrderedDict() self.trixId = trixId.rstrip() def setExtLink(self): self.setSearchIndex() self.moveIndexFile() self.index_settings["searchTrix"] = "trix/%s" % self.indexIxName return self.index_settings def moveIndexFile(self): indexFolder = os.path.join(self.mySpecieFolderPath, 'trix') self.indexIxName = "".join( ( self.trackName, ".ix") ) self.indexIxxName = "".join( ( self.trackName, ".ixx") ) if not os.path.exists(indexFolder): os.makedirs(indexFolder) # Move index files to the index folder self.indexIxPath = os.path.join(indexFolder, self.indexIxName) shutil.copyfile(self.indexIx, self.indexIxPath) self.indexIxxPath = os.path.join(indexFolder, self.indexIxxName) shutil.copyfile(self.indexIxx, self.indexIxxPath) def setSearchIndex(self): if not self.trixId: self.logger.error("Didn't specify Trix Id") self.logger.debug("trixId= %s, searchIndex= %s", self.trixId, self.trixId) self.index_settings["searchIndex"] = self.trixId