# HG changeset patch
# User rmarenco
# Date 1471879433 14400
# Node ID e4bed427031f2a8ac7423ed5bd2f70d5fcd9b934
# Parent  30fd14cf565c853e84102b492548d1e287736faa
planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c

diff -r 30fd14cf565c -r e4bed427031f README.md
--- a/README.md	Thu Jul 14 18:03:58 2016 -0400
+++ b/README.md	Mon Aug 22 11:23:53 2016 -0400
@@ -2,5 +2,3 @@
 ---------------------------
 
 pslToBed: transform a psl format file to a bed format file.
-
-(Contains pslToBed binary for [linux.x86_64](http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/))
diff -r 30fd14cf565c -r e4bed427031f pslToBed.xml
--- a/pslToBed.xml	Thu Jul 14 18:03:58 2016 -0400
+++ b/pslToBed.xml	Mon Aug 22 11:23:53 2016 -0400
@@ -1,6 +1,7 @@
 <tool id="pslToBed" name="pslToBed" version="0.1.0">
     <requirements>
-        <requirement type="package" version="1.0">pslToBed</requirement>
+        <!-- Requires Conda -->
+        <requirement type="package" version="324">ucsc-psltobed</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
@@ -9,12 +10,17 @@
         pslToBed $input $output
     ]]></command>
     <inputs>
-        <param name="input" type="data" format="psl" />
+        <param name="input" label="Psl file" type="data" format="psl" />
     </inputs>
     <outputs>
         <data name="output" format="bed" />
     </outputs>
     <help><![CDATA[
-        pslToBed: transform a psl format file to a bed format file.
+        Transform a Psl format file to a Bed format file.
+
+
+        Input: Psl File
+
+        Ouput: Bed File
     ]]></help>
 </tool>
\ No newline at end of file
diff -r 30fd14cf565c -r e4bed427031f tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jul 14 18:03:58 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,21 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <!-- Package blastXmlToPsl -->
-    <package name="pslToBed" version="1.0">
-        <install version="1.0">
-            <actions>
-                <action type="download_binary" target_directory="bin">
-                    <url_template os="darwin">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/pslToBed</url_template>
-                    <url_template os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/pslToBed</url_template>
-                </action>
-                <action type="chmod">
-                    <file mode="750">$INSTALL_DIR/bin/pslToBed</file>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>The tools downloaded by this dependency definition are free for academic use.</readme>
-    </package>
-</tool_dependency>
\ No newline at end of file