Mercurial > repos > rmarenco > regtools_junctions_extract

view tool_dependencies.xml @ 0:4c8a5b14a95f draft

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planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
author rmarenco
date Fri, 22 Jul 2016 17:14:38 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="regtools" version="0.3.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action>
                <action type="make_directory">build</action>
                <action type="change_directory">build</action>

                <action type="set_environment_for_install">
                    <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="cmake" version="3.2.3" />
                    </repository>
                </action>
                <action type="shell_command">cmake ..</action>

                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>regtools</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>