diff test-data/SP1_r.fastq @ 0:9839a3fe72f7 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/blob/master/tools/trim_adapters commit 3d0b670cda6522e5c442b144785b2f9f517f103d
author rnateam
date Wed, 20 Jun 2018 15:48:09 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/SP1_r.fastq	Wed Jun 20 15:48:09 2018 -0400
@@ -0,0 +1,500 @@
+@cluster_8:UMI_CTTTGA
+TATCCTTGCAATACTCTCCGAACGGGAGAGC
++
+1/04.72,(003,-2-22+00-12./.-.4-
+@cluster_21:UMI_AGAACA
+GGCATTGCAAAATTTATTACACCCCCAGATC
++
+>=2.660/?:36AD;0<14703640334-//
+@cluster_34:UMI_AGCTCA
+TCTTGCAAAAACTCCTAGATCGGAAGAGCAC
++
+-/CA:+<599803./2065?6=<>90;?150
+@cluster_37:UMI_GAGGAG
+GTCTTTGTACAAAATTTTATTAAAGGTCTTT
++
+?B?DEC@A=?ADDAEEEC?EC@D6A@@>DE4
+@cluster_43:UMI_GGATTG
+GAGTTATAATCCAATCTTTATTTAAAAATCT
++
+>=AEC?C@;??0A>?0DEB9EEB@DDC1?=6
+@cluster_55:UMI_CTAATG
+AGACAAAAGGATTTATTTGGAAATTTCCAAA
++
+===>7DD?A>;EEC?EECB>?DAEEB?AAC3
+@cluster_62:UMI_CCTTGC
+GAGTTGCGACAATACTCTCCCCCGAGACCCA
++
+9/96C1954/12?=7=?5::94,40125442
+@cluster_66:UMI_TTGGGG
+CCAACTAACTTTTATTTTAAGTTCAGGGGGT
++
+<AA@?A@@?DEEC?EEEC@?AEBA?A===@9
+@cluster_71:UMI_CCAATA
+CAGCTTTGCAACCATACTCCCCCCGGAACCC
++
+<?B?DEB::9>@?@C=?:=<<<:===@?=83
+@cluster_83:UMI_CCAGTC
+CTCCCACAGTTCTGCGCCAGAGCGGAAGAGC
++
+=:?*>4>;>66;C:612661<2322141=:-
+@cluster_88:UMI_TGCCGA
+TCACTACCTCCCCGGGTCGGGAGTGGGGTAT
++
+/@=>@=@<D;;;<==@B9==>,75<:593=7
+@cluster_93:UMI_ATTGTA
+TCCTCACTATCTGATTCCTCCCCAGATCGGA
++
+;9=BA=?@<??CB;EB?=C?;8@:=:=88:7
+@cluster_98:UMI_CTTTGG
+AGTTCCCCCCCCTATATCGAAAAACACACCC
++
++670.98;.+460.1533=09;3481/14*3
+@cluster_105:UMI_TCGCGC
+GATTGAGACAGAGTCTGCTGTGTTGCCCCCC
++
+?<E=====>?==A@?C:?C@A=EC7>;;<<7
+@cluster_113:UMI_ACAATA
+GCTTCAGCTGCCCAGATCGGAAGAACACACG
++
+B?DBA?B?C:><A?=<?==>@?3@/><?=?5
+@cluster_117:UMI_TCAGTA
+GCACTACTATATTAGATTGTGTTATCCGTTA
++
+1)+-0.-0-4/82-+*45//.31--0/074.
+@cluster_126:UMI_CATGAA
+CCCCCCCAGATCGGAAAAGCACACGCCTGAA
++
+?.:8<;??=6?==>?:6><0;165B35;66:
+@cluster_131:UMI_AGTGTA
+GTGAGCACAGGGTACTTTATTGATGGTACAT
++
+;AB=B::>4:<@57=654187B;B:=4;9?9
+@cluster_137:UMI_ACGGAC
+GCAAATATAAACAGGTTTATCTATTCTGTCT
++
+9)75?C?:@6=36:6D<B78.0.5B1<=7.5
+@cluster_144:UMI_CAGGGC
+CCACCCCCCCCAAATCGGAAAAACACACCCC
++
+.A=@<<<<<;AACA=49>@DDD?53==@;85
+@cluster_149:UMI_CGGCGC
+GCCACTATATCTCAAGCATTAAAATACATGT
++
+3=7,.0>6287<2@47/4=5/;<62,38:18
+@cluster_153:UMI_TACAAA
+TTTTTTTTACACTTTATAACACACTTTTTAT
++
+EEEEEEE3995.6E848@?>=;=3:EEE3/9
+@cluster_162:UMI_AACGGG
+CCACAACATTCCATTTATACACAGAACTAAA
++
+>A=?A@?@EB?A@EEC?C=?=??=@@?A@D4
+@cluster_165:UMI_AGTCGC
+TTGGCTCTTTTTCGTTTATTGCATGCCCCCC
++
+CC:?<D;D?;<2-<@A<>B>2::B082,9*/
+@cluster_172:UMI_GTTTCC
+GGCTTTGCAACCATACTCCCCCCGGAACCCA
++
+=@?DEC::A@@A@C=?D?<<<<==>@@@<A=
+@cluster_181:UMI_CTTGCC
+TAAACAGAGTCTTACTCTATTGTCCAGGCTG
++
+/855.7768<0;5.084</9=191/.47/3.
+@cluster_186:UMI_GGGTAG
+CCTTTCCTTTCCCCCAGATCGGAAGAGCACA
++
+>>DEB?>DEB?8<<A?=<?==>@?:=B:===
+@cluster_190:UMI_GGCGGA
+CAAATCAATAGGTCTTTTATTGCATCATTTA
++
+?AA??AAAC=?@B?DEDB>EC::@?A@EEC=
+@cluster_207:UMI_TGAACA
+GTTTCCCCCCCCAAATCGGAAAAACACACCC
++
+;=B:9/193993=>?:88=694;555767+,
+@cluster_215:UMI_TCAAAC
+TCCCCCCCAAATCGGAAAAACACACCCCTAA
++
+3?<<<<<AADA?==>@DDD@?=?=@<<>A<=
+@cluster_217:UMI_CTCGGC
+CTAAACTTTTATTGAAAAAAAAACCGAGGAG
++
+>A@D@?DEEC?ECB@DDDDDDD?@=@=A>=B
+@cluster_219:UMI_ACGTGG
+TGTAATTAGTAGACATGGTCTTCTACCCATA
++
+A@C@AEC=AC===?@BB@B?DB?A=@<A@C=
+@cluster_223:UMI_ATTTCC
+CCTTCTGTTTCTTTTTCCCTTCTTTCCTTCC
++
+;>DB?C@EEB?DEEEB?<<DB?DEB?=D@=:
+@cluster_229:UMI_CAAGTA
+GAGGTTTGCAGCTATTTTATTTACAAGTATA
++
+==A@EEC::?B?A?EEEC?EEC=?A?AB?C=
+@cluster_238:UMI_AGGTTG
+GCTTCCTACTTTTCAGGTTTAAATTTATCTT
++
+@?DB?>@=?DEEB@?A@CEC@DAEEC???DB
+@cluster_248:UMI_TTTTTG
+TAGGAAAAAATGGTTTTGGACATGGGATGAA
++
+8=A>2DDDBABA@9@<BA.5>:BB=>7BA7;
+@cluster_253:UMI_GCGCTC
+TCGTCACTACCTCCCCGGGTCGGGAGTGGGG
++
+D=@BA=?A<@>D?<<===@B===>=?>B1:2
+@cluster_256:UMI_AGACAG
+CCGTGATCCTTTTTCAGTGCTTCTACAATGC
++
+>=@AB<??>DEEEBA?AA:?DB?A=?AAB:>
+@cluster_265:UMI_AATTTG
+TACCCCACCCAAATCGGAATAACACACCCAC
++
+@5?0<;7;845773245>:1<38,1-6*8,/
+@cluster_273:UMI_TCGAAA
+GGTTTTCCTTTTTATTTAATCAAAGACTGGT
++
+A@EEEB?>DEEEC?EEC@A?AAD?=+?CB@8
+@cluster_286:UMI_CGGTGC
+AACAATGATCAATTTTAAGAAATGGGTACAT
++
+A@>AABB<?A@AEEEB@9=@DABB=@C=>@/
+@cluster_289:UMI_CTTCTA
+CCCCCTCCCAAATCGGAAAAACACACCCCTA
++
+@<3<>:?:AAB@?==>@DDC??66:?8;>@2
+@cluster_293:UMI_CGCACC
+ATCACTTCTATCAAAGATTGCTCTATTATCT
++
+@?A=?DB?A??;AD?=<DA5?D?A?EA>9:D
+@cluster_296:UMI_TTTTTC
+GAGATTGAGCCTCGTTGACCAGGCTGGAGCA
++
+4==<>1=5B=<D9?DC66@?77@??=>37)2
+@cluster_299:UMI_ATCGCC
+GCCCCCCCCCAAATCGGAAAAACACACCCCC
++
+?>;;;;<;;?@AA>==>@CCC=;<>7;095+
+@cluster_302:UMI_TCGGCC
+TTGCTACTACCACCAAGATCCCCAGACCGGA
++
+?>3=5,-25<74766=,34<;:20,/254.2
+@cluster_309:UMI_TTTCAA
+ATAGTTTAATGTATTTTAATAGCAAACTTAC
++
+AC=ADEC@AB@C>EEEC@=C;B:@C9>DB=?
+@cluster_316:UMI_TGCTAC
+TTGAGGGATGGAAGAATATATAATCTATCAA
++
+CCB=8=><BB=4>31=A:C?C@A??@?>A>5
+@cluster_323:UMI_CAGAGC
+CCCTTTTTCCCCCAGATCGGAAAAACACACC
++
+<<8DEEEA?<<<6?=<?===@ACC9:<==>.
+@cluster_337:UMI_TTCCCG
+CCTTCCTATTTATTGCCCAGATCGGAAGAGC
++
+1986:</-4<4-522702:.22674743740
+@cluster_339:UMI_GCCCAC
+AATTTTGTAAAAAATGGTTTATCAATTCCAT
++
+AAEDEC@A@DDDD7BB@EE9??A<6E<?@@?
+@cluster_344:UMI_GAGGTG
+CTTTTCCTCCGCTGCCCAGATCGGAAGAGCA
++
+?DEEB?>D?=B?C:><A?=<?==>@?==B::
+@cluster_349:UMI_CTATGA
+CAGCTTTGCAACCATACTCCCCCCGGAACCC
++
+??B?DEC::A@@A@C=?D?<<<<==>@@@;0
+@cluster_357:UMI_CGCTCA
+GAGATTTTAATTAATTTTTATAAAATCTGAG
++
+===<EEEC@AEC@AEEEEC?C@DDA??CB=B
+@cluster_362:UMI_TTATAA
+CTTCTTTCCTGTTTTTTTTAAAATCCTTCTT
++
+?DB?DEB?>C@>BDD>CEC@DDA??>DB?=6
+@cluster_368:UMI_GGGCGA
+TAGGTTTTTCAGTGTATTGCTTTGAGGACCC
++
+;=A@CBEE@A?A@>@?E=9>6:B>661=@,1
+@cluster_375:UMI_ATCCGG
+CCCCCTCCCCAAATCGGAAAAACACACCCCT
++
+=;<;=D?;;:A?@<==>@C?C9>;?:@0862
+@cluster_381:UMI_GGAACA
+GAGACGGAGTCTCGCTCTGTTGCCCCCAGAT
++
+;===?=>=AB?D=B?B?>@DC:><<<A?=<8
+@cluster_387:UMI_TGTACG
+TGCCTTTTGAAACCAAATATTTAATATTTTC
++
+A:>>DEECB@D@@AADAC?EEC@AC?EEEB?
+@cluster_389:UMI_AATTCC
+TTGCAACCATACTCCCCCCGGAACCCCCCAG
++
+CC:7A?5=3B:?>?<<<;;0.0995;;;721
+@cluster_391:UMI_TCTATA
+GTTCATTTTGCCATGACTAAGCCACTATAAA
++
+AEBA@EEEC6>A@BB=?A@?B>A=?A?C@D?
+@cluster_400:UMI_TCCGTG
+GTGCGCAAAAGTTTTATTGTAAAAAAAGACC
++
+00).1(/9;//=D?40=424@DB83::7359
+@cluster_406:UMI_AACGGC
+AGATGGAGTCTCGCTCTGTCGCCCAGGCTGG
++
+?=<BB>=AB?D=B?D?C@B=B><A?A@4CB@
+@cluster_410:UMI_GTGTTA
+TGGTGTGTGGGATGGAGTCTTGCTCTGTTGC
++
+BB@A@A@AB=><BB>;AB?DC:?D?C@EC:>
+@cluster_434:UMI_CGTCAC
+GACAGTCTCACTTGGTCACCCCCCAGATCGG
++
+@=??AB?DA=?DCB@BA=@<<<<A>.47=</
+@cluster_438:UMI_CCGTAA
+AAAGTTCAGCTTTTTATTGAACATGTTATAA
++
+DD?AEBA?B?DEEEC?ECB@@?@B@EC?C@@
+@cluster_444:UMI_ATAGAA
+TGGTACCCCCCCAAATCGGAAAAACACACCC
++
+BB@?=@<<<<;AAAA?==>@DDD??=?=@<;
+@cluster_454:UMI_GAATGG
+ATTTCATAATTCTCCTTTATTAGGCACAGGT
++
+;EEBA>C6?E??D?>DEB:C<<A<:<>?A=1
+@cluster_456:UMI_ACTGTG
+GCTAGCTTTCTATTTGTAAACTTTGTGTCGG
++
+>?A=B?BEB?@?EEC@C@D@?DEC@A2A==@
+@cluster_464:UMI_CCCGTG
+CCCCCCCCCAAATCGGAAAAACACACCCCTA
++
+><;:<<<;AA>2>=71@DCA=7797@86;@6
+@cluster_470:UMI_GCTTTC
+CTGAGACGAAGTCTCACTCTGTCGCCCAGGC
++
+>CB===?@@?AB?DA=?D?C@B=B><A?A@4
+@cluster_475:UMI_TGTCGA
+GTACCCCCCCCAAATCGGAAAAACACACCCC
++
+1>:@<<<<<11AD?75=3@DDD?><<:@<64
+@cluster_485:UMI_CATTCC
+CAGCTTTGCAACCATACTCCCCCCCCAGATC
++
+A?B?DEC::A@@A@C=?D?<<<<<<A?=<??
+@cluster_490:UMI_TAGGCC
+AGAATCTTAAACTAAATCCTTTATTTCAAAA
++
+?=@A??DC@C??A@DA??2DEC?EEB9ADD=
+@cluster_492:UMI_TCGTAC
+CCCCCCCAGATCGGAAAAGCACACGTCTGAA
++
+<;;7<;@?=<?==>@D;?B:=?=?@2?CB@?
+@cluster_496:UMI_GTATCA
+ACGAATGAGGCAATTTATTAACCCAGCATGG
++
+@?@@ABB=A@:AAEEC?EC@@@<A?B:@BB@
+@cluster_510:UMI_TCGTGC
+GCAACACGTTTATTGAGAGGCAGTTGTGCTC
++
+=:A@?=?@ECC?ECB===:::>AEC@A:?D>
+@cluster_519:UMI_CTTAAA
+GGTTGAGCACAGGGTACTTTATTGATGGTAC
++
+A@ECB=B:=??A=@C=?DEC?ECB<BB@B=>
+@cluster_523:UMI_TGCCTG
+TTGCAGATTTCCTTCATCAAATTAAAACAGT
++
+4B::?=.DDB9<DBA@?A@DAEC@DD@>?A?
+@cluster_525:UMI_AGGGGC
+GTTCGTTCAAGTGCACTTTCCAGTACACTTA
++
+@EB=@EBAA?AA::=?DEB?A?AC=?=?DC<
+@cluster_533:UMI_GGGGTC
+GGTACCCCCCCCCAGATCGGAAAAACACACC
++
+:@C=@<<<<;;;A?:<>=<9;C@A?:=:=@1
+@cluster_536:UMI_GTTACA
+CCCCCCCCCACATCCGAAAACACACCCCCGC
++
+@<;;<<;3A=./46-77@A?/231517900-
+@cluster_542:UMI_CCGACA
+TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
++
+EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEB
+@cluster_559:UMI_TCAACG
+CCGGCACTAAGTCAAGTTCTTTACTTCCCCA
++
+>==@:=?A@?ABAA?AEB?DEC=?DB?<<A=
+@cluster_564:UMI_TTCGCA
+TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
++
+EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEB
+@cluster_569:UMI_GGCTCC
+GCAGAACACTTCTTTATTATAGCAACATATA
++
+B:?=@@?=?DB?DEC?EC?C=B:A@?@C?B=
+@cluster_578:UMI_GGGCTA
+GGTACAGACAGGATCTCACTATGTTGCCCAG
++
+A@C=??==??A><??DA=?A?B@EC:><A?B
+@cluster_587:UMI_TTCCGC
+CCCCCCCAGATCGGAAAAACACACGCCTGAA
++
+<<<<<<A>=<64=>/DCD2>=><?<<>@;@?
+@cluster_591:UMI_CAGGGC
+CCCGGTCTAATGTTGCTTTTATTATTTTGAA
++
+<<==@B?A@AB@EC:?DEEC?EC?EEECB@@
+@cluster_597:UMI_TTTTGG
+GCGTAGGGGTTTTAGGTAAATGTCCTTTGAA
++
+9?@C8A==@7AEC,:/C<DA=@B=>6EB1:>
+@cluster_604:UMI_TTAAGG
+GCTACTACCACCAAGATCTGCACCTGCGGCG
++
+;?@=?@=@A=:A<?=;??C99=>>C:>;@;8
+@cluster_613:UMI_CCCGTC
+TGTTATATTTCACATCATTTTTTCCAGACAT
++
+C3BC/C?EB22-<76><BDEE5B?A:4;:?4
+@cluster_619:UMI_TGTGAC
+CCAGATCGGAAGAGCACACGTCTGAACTCCA
++
+<A?=<?==>@?=<B:;:=?@B?CB@@?C?85
+@cluster_622:UMI_TGGCTG
+GAGACAGAGTATTGCTGTGTCGCCCCCCAGA
++
+====??==AC?EC:?=@A@B=B><<;<A?<:
+@cluster_632:UMI_TGGCAA
+GAGATGGAGTCCCCAGATCGGAAGAGCACAC
++
+===<BB>=AB?<<A?=<?==>@?9=B:=?=@
+@cluster_638:UMI_CCTTAG
+TACTTTAAAATGCTTTATTGGAATTATTTTG
++
+?=>DE>@DC5A:?DEC?E;B>@3EC>EEE:0
+@cluster_649:UMI_GACGGA
+TTTTTTTTTTTTTTTTTCACACCCCACACAG
++
+EEEEEEEEEEEEEEEB11,.,/<<6./-//3
+@cluster_664:UMI_CGCCGG
+TCCCCCCCCCAAATCGGAAAAACACACCCCC
++
+B?<<<<<<<=ADA?==>@DDD??=>=@:<5*
+@cluster_674:UMI_CGTTTC
+AGACAAGTTCTCGCTCTGTCACCCAGGCTGG
++
+?==?A?AEB?D=B?D?C@BA=@<A?A@?CB@
+@cluster_676:UMI_AGGTAG
+TGGCATTTTTAATTTAGGTTTGTTTTATTTA
++
+AB@:@EEEEC@AEEC=A@EEC@EEEC?EEC=
+@cluster_680:UMI_CCGCTA
+TCTGATCTGACATTATTTCTATATTTTTAGA
++
+??CB<??CB=?@EC?EEB?A?C?EEEEC===
+@cluster_682:UMI_GTGCAC
+GTTTTTTTTTTTTTTTTTACCCCCCCCACAC
++
+8EEEEEEEEEEEEEEEEB=@<<<<<;=4/40
+@cluster_687:UMI_ACGAAC
+GACACTACTCTCCCACATCGCGAGAGAGCAC
++
+67/-01:5<::?:@5120+6531.8--2-68
+@cluster_690:UMI_ATTTAG
+GTTTTTTTTTTTTTTTTTTTTTTTTTTTCTG
++
+1EEEEEEEEEEEEEEEEEEEEEEEEEEB?:)
+@cluster_693:UMI_CGGCCA
+CTTTTGAGGCTTTTTCGTTGCCAGCAAGGGC
++
+?DEECB=A@?DEEEB=@EC:>A?B:A?A=@<
+@cluster_700:UMI_ATCGAA
+GCAGTTTTTACATTTATTTAAACAGAAAACG
++
+B:?AEEEEC=>@EEB?EEC@4>>?=@DD??B
+@cluster_711:UMI_CTCCGA
+ATTAATGAAAACATTCTTGGCAAATGCTTTC
++
+=EC@ABB6DD@??=B?DCB@:@DAB5?<EB=
+@cluster_715:UMI_CTGTCG
+TTTTGGGGCCCCCCCCAGATCGGAAAAGCAC
++
+EEEA1<<@>;<<<<<A6=;=:67>C@=B869
+@cluster_717:UMI_CAGCCC
+TCAGCTTTGCAACCATACTCCCCCCGGAACC
++
+DA?B?DEC:8A?@A@C=?D?<<<<;=>@@@;
+@cluster_721:UMI_TTGTTC
+GAGACGGAGACTCACTCTGTCGCCCCCCAGA
++
+3===>:><=<8AA683<;5912.<<;;>3./
+@cluster_727:UMI_TTTACC
+TTCTGAGCCTAAATGCCCTCAAAGCCCGTCC
++
+DB?CB=B-=?@DA@7>;>B8AD8?>;7:<?*
+@cluster_731:UMI_GTCACA
+TTGCTTCACTGACTTAACTCAAATTTCTTAA
++
+EC:?DBA;?CB=?=B@@?DAADAEEB?AC@?
+@cluster_742:UMI_GAGACC
+TGAGTGGGAGTCTCGCTCTGTACCCCAGGTG
++
+21,005-;,252605262746,/2231;54/
+@cluster_757:UMI_TTGCAA
+TCTTTGCACACTTATATTTTTTTTTGTGTTT
++
+?4?<<6:+?:16@3707EEE<E;EC1303DB
+@cluster_766:UMI_TATTGG
+CTTCCCAGTAACTGAGAGAAAATTACCATTC
++
+?DB?<A?AC@@?CB====@DDAEC=@A@EB;
+@cluster_775:UMI_CCTGCA
+GTGCAAAAACTGAATGTAGTCAATGGTCTTT
++
+AA::ADDD?>CB>AB?C:ABAAABB@><@EA
+@cluster_780:UMI_GTTGCA
+GGAGTTCCTAACCCAACAGTAATATCATTAG
++
+7.-072.0/7//33377781/46-/1371-<
+@cluster_792:UMI_CGGCAC
+TGTCACCATCCTTCTTTTCTTCTTCCTCATC
++
+@6>6,430:45?=;CDD:7A:7DA<9<7:70
+@cluster_796:UMI_ATTTGA
+TAGTCAGCTATTTAATTAGGTTCTTAAGACA
++
+@=ABA?B?A?EEC@AEC=A@EB?DC@?==?8
+@cluster_805:UMI_CGTGGG
+GTACTGCTCAAGCGCTGTCTATATCTCTCTA
++
+04904,.12:08/2/>16/74@4213<8.0.
+@cluster_809:UMI_CTTTTA
+CACAAGGAATATCATTTTATTACTGTAATCA
++
+?=?A?A>@AC??A@EEEC?EC=?C@C@A?A=
+@cluster_814:UMI_GGGCTG
+TTCTAGGTCCAATGGTAGTTTTTATTCCCCA
++
+DB?A=A@B?AAABB@@=A>DDEC?EB?;;@;
+@cluster_819:UMI_AGTATA
+GCTGTAGGAACAGCAGTCTTGGTGGTTAGCA
++
+B?C@C=A>@?>?B:?AB?DCB@AB@EC=B,<
+@cluster_824:UMI_GAGTCC
+AGCTTTGCAACCATACTCCCCCCGGAACCCA
++
+?B?DEC::A@@A@C=?D?<<<<==>@@@<@=
+@cluster_834:UMI_TTAAGG
+AGGGTGGGGGATCACATTTATTGTATTGAGG
++
+=A=@AB===>4?A=??EEB?EB@C?ECB=A?