Mercurial > repos > rnateam > blockclust
comparison blockclust.xml @ 13:dbb6ee3179bc draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/blockclust commit 6957c96f98dea265503f4e126d4aaa6f8c2e1d2e
| author | bgruening |
|---|---|
| date | Sat, 04 Nov 2023 10:07:58 +0000 |
| parents | aab6cf87b40a |
| children |
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| 12:aab6cf87b40a | 13:dbb6ee3179bc |
|---|---|
| 1 <tool id="blockclust" name="BlockClust" version="1.1.0"> | 1 <tool id="blockclust" name="BlockClust" version="1.1.1"> |
| 2 <description>efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles</description> | 2 <description>efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1.0">blockclust</requirement> | 4 <requirement type="package" version="1.1.1">blockclust</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <version_command>blockclust.py -v</version_command> | 6 <version_command>blockclust.py -v</version_command> |
| 7 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
| 8 export BLOCKCLUST_DATA_PATH=\$(dirname \$(which blockclust.py))/../share/blockclust_data && | 8 export BLOCKCLUST_DATA_PATH=\$(dirname \$(which blockclust.py))/../share/blockclust_data && |
| 9 | 9 |
| 129 <test expect_num_outputs="1"> | 129 <test expect_num_outputs="1"> |
| 130 <param name="operation" value="pre"/> | 130 <param name="operation" value="pre"/> |
| 131 <param name="reads_bam" value="test.bam"/> | 131 <param name="reads_bam" value="test.bam"/> |
| 132 <output name="tags_bed"> | 132 <output name="tags_bed"> |
| 133 <assert_contents> | 133 <assert_contents> |
| 134 <has_text_matching expression="chr6\t26555497\t26555527\ttag_10|1|19\t0.052632\t+" /> | 134 <has_text_matching expression="chr6\t26555497\t26555527\ttag_10\|1\|19\t0.052632\t\+" /> |
| 135 <has_text_matching expression="chr11\t122017275\t122017297\ttag_30|1|3\t0.333333\t-" /> | 135 <has_text_matching expression="chr11\t122017275\t122017297\ttag_30\|1\|3\t0.333333\t-" /> |
| 136 </assert_contents> | 136 </assert_contents> |
| 137 </output> | 137 </output> |
| 138 </test> | 138 </test> |
| 139 | 139 |
| 140 <!-- Test: Clustering only --> | 140 <!-- Test: Clustering only --> |