Mercurial > repos > rnateam > blockclust_workflow
comparison blockclust_workflow_complete.ga @ 4:59e321cafca7 draft
Uploaded
| author | rnateam |
|---|---|
| date | Tue, 23 Sep 2014 08:33:55 -0400 |
| parents | 0c393c9d3756 |
| children | 47a0bcb1188d |
comparison
equal
deleted
inserted
replaced
| 3:a1c846233094 | 4:59e321cafca7 |
|---|---|
| 15 } | 15 } |
| 16 ], | 16 ], |
| 17 "name": "Input dataset", | 17 "name": "Input dataset", |
| 18 "outputs": [], | 18 "outputs": [], |
| 19 "position": { | 19 "position": { |
| 20 "left": 217, | 20 "left": 240, |
| 21 "top": 276.5 | 21 "top": 315.5 |
| 22 }, | 22 }, |
| 23 "tool_errors": null, | 23 "tool_errors": null, |
| 24 "tool_id": null, | 24 "tool_id": null, |
| 25 "tool_state": "{\"name\": \"Input BAM file\"}", | 25 "tool_state": "{\"name\": \"Input BAM file\"}", |
| 26 "tool_version": null, | 26 "tool_version": null, |
| 71 "name": "cluster_hclust", | 71 "name": "cluster_hclust", |
| 72 "type": "pdf" | 72 "type": "pdf" |
| 73 } | 73 } |
| 74 ], | 74 ], |
| 75 "position": { | 75 "position": { |
| 76 "left": 446.5, | 76 "left": 469.5, |
| 77 "top": 233.5 | 77 "top": 272.5 |
| 78 }, | 78 }, |
| 79 "post_job_actions": { | 79 "post_job_actions": { |
| 80 "HideDatasetActioncluster_dist": { | 80 "HideDatasetActioncluster_dist": { |
| 81 "action_arguments": {}, | 81 "action_arguments": {}, |
| 82 "action_type": "HideDatasetAction", | 82 "action_type": "HideDatasetAction", |
| 141 "name": "out_file1", | 141 "name": "out_file1", |
| 142 "type": "input" | 142 "type": "input" |
| 143 } | 143 } |
| 144 ], | 144 ], |
| 145 "position": { | 145 "position": { |
| 146 "left": 740, | 146 "left": 763, |
| 147 "top": 265 | 147 "top": 304 |
| 148 }, | 148 }, |
| 149 "post_job_actions": { | 149 "post_job_actions": { |
| 150 "HideDatasetActionout_file1": { | 150 "HideDatasetActionout_file1": { |
| 151 "action_arguments": {}, | 151 "action_arguments": {}, |
| 152 "action_type": "HideDatasetAction", | 152 "action_type": "HideDatasetAction", |
| 176 "name": "output", | 176 "name": "output", |
| 177 "type": "tabular" | 177 "type": "tabular" |
| 178 } | 178 } |
| 179 ], | 179 ], |
| 180 "position": { | 180 "position": { |
| 181 "left": 961.5, | 181 "left": 984.5, |
| 182 "top": 213.5 | 182 "top": 252.5 |
| 183 }, | 183 }, |
| 184 "post_job_actions": { | 184 "post_job_actions": { |
| 185 "HideDatasetActionoutput": { | 185 "HideDatasetActionoutput": { |
| 186 "action_arguments": {}, | 186 "action_arguments": {}, |
| 187 "action_type": "HideDatasetAction", | 187 "action_type": "HideDatasetAction", |
| 244 "name": "cluster_hclust", | 244 "name": "cluster_hclust", |
| 245 "type": "pdf" | 245 "type": "pdf" |
| 246 } | 246 } |
| 247 ], | 247 ], |
| 248 "position": { | 248 "position": { |
| 249 "left": 1220.5, | 249 "left": 1287.5, |
| 250 "top": 369.5 | 250 "top": 294.5 |
| 251 }, | 251 }, |
| 252 "post_job_actions": { | 252 "post_job_actions": { |
| 253 "HideDatasetActioncluster_dist": { | 253 "HideDatasetActioncluster_dist": { |
| 254 "action_arguments": {}, | 254 "action_arguments": {}, |
| 255 "action_type": "HideDatasetAction", | 255 "action_type": "HideDatasetAction", |
| 271 "output_name": "tags_bed" | 271 "output_name": "tags_bed" |
| 272 } | 272 } |
| 273 }, | 273 }, |
| 274 "tool_errors": null, | 274 "tool_errors": null, |
| 275 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", | 275 "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", |
| 276 "tool_state": "{\"tool_mode\": \"{\\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", | 276 "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", |
| 277 "tool_version": "1.0.0", | 277 "tool_version": "1.0.0", |
| 278 "type": "tool", | 278 "type": "tool", |
| 279 "user_outputs": [] | 279 "user_outputs": [] |
| 280 }, | 280 }, |
| 281 "5": { | 281 "5": { |
| 294 "name": "out_file1", | 294 "name": "out_file1", |
| 295 "type": "input" | 295 "type": "input" |
| 296 } | 296 } |
| 297 ], | 297 ], |
| 298 "position": { | 298 "position": { |
| 299 "left": 1562, | 299 "left": 1588, |
| 300 "top": 204 | 300 "top": 232 |
| 301 }, | 301 }, |
| 302 "post_job_actions": { | 302 "post_job_actions": { |
| 303 "HideDatasetActionout_file1": { | 303 "HideDatasetActionout_file1": { |
| 304 "action_arguments": {}, | 304 "action_arguments": {}, |
| 305 "action_type": "HideDatasetAction", | 305 "action_type": "HideDatasetAction", |
| 338 "name": "multiple_alignment_output", | 338 "name": "multiple_alignment_output", |
| 339 "type": "tabular" | 339 "type": "tabular" |
| 340 } | 340 } |
| 341 ], | 341 ], |
| 342 "position": { | 342 "position": { |
| 343 "left": 1857, | 343 "left": 1880, |
| 344 "top": 256.5 | 344 "top": 295.5 |
| 345 }, | 345 }, |
| 346 "post_job_actions": { | 346 "post_job_actions": { |
| 347 "HideDatasetActionmultiple_alignment_output": { | 347 "HideDatasetActionmultiple_alignment_output": { |
| 348 "action_arguments": {}, | 348 "action_arguments": {}, |
| 349 "action_type": "HideDatasetAction", | 349 "action_type": "HideDatasetAction", |
| 366 "annotation": "", | 366 "annotation": "", |
| 367 "id": 7, | 367 "id": 7, |
| 368 "input_connections": { | 368 "input_connections": { |
| 369 "tool_mode|clusters_bed": { | 369 "tool_mode|clusters_bed": { |
| 370 "id": 4, | 370 "id": 4, |
| 371 "output_name": "clusters" | 371 "output_name": "model_based_pred_bed" |
| 372 }, | 372 }, |
| 373 "tool_mode|cmsearch_out": { | 373 "tool_mode|cmsearch_out": { |
| 374 "id": 6, | 374 "id": 6, |
| 375 "output_name": "outfile" | 375 "output_name": "outfile" |
| 376 }, | 376 }, |
| 414 "name": "cluster_hclust", | 414 "name": "cluster_hclust", |
| 415 "type": "pdf" | 415 "type": "pdf" |
| 416 } | 416 } |
| 417 ], | 417 ], |
| 418 "position": { | 418 "position": { |
| 419 "left": 2165.5, | 419 "left": 2184.5, |
| 420 "top": 313.5 | 420 "top": 338.5 |
| 421 }, | 421 }, |
| 422 "post_job_actions": { | 422 "post_job_actions": { |
| 423 "HideDatasetActionclusters": { | 423 "HideDatasetActionclusters": { |
| 424 "action_arguments": {}, | 424 "action_arguments": {}, |
| 425 "action_type": "HideDatasetAction", | 425 "action_type": "HideDatasetAction", |